CLEC4M (C-type lectin domain family 4 member M)

symbol:
CLEC4M
locus group:
protein-coding gene
location:
19p13.2
gene_family:
CD molecules|C-type lectin domain family
alias symbol:
HP10347|DC-SIGNR|LSIGN|DCSIGNR|DC-SIGN2
alias name:
None
entrez id:
10332
ensembl gene id:
ENSG00000104938
ucsc gene id:
uc010dvt.3
refseq accession:
NM_014257
hgnc_id:
HGNC:13523
approved reserved:
2000-09-19
19p13.2
基因染色体位置图

CLEC4M(C-type lectin domain family 4 member M)是一种属于C型凝集素(C-type lectin)基因家族的基因,其编码的蛋白质是一种糖结合蛋白,能够识别并结合特定的糖类结构。C型凝集素家族成员通常参与免疫调节、病原体识别和细胞间相互作用。CLEC4M主要在肝脏、淋巴结和内皮细胞中表达,其蛋白产物通过与病毒或细菌表面的糖类结构结合,帮助机体识别并清除病原体,从而在先天免疫中发挥重要作用。CLEC4M也被称为L-SIGN(Liver/lymph node-specific ICAM-3 grabbing non-integrin),它能够结合ICAM-3(细胞间黏附分子-3),参与免疫细胞的迁移和激活。该基因的突变可能影响其与病原体或宿主分子的结合能力,导致免疫防御功能下降,增加感染风险。例如,某些CLEC4M的遗传变异与HIV、乙肝病毒(HBV)和丙肝病毒(HCV)感染的易感性相关。此外,CLEC4M在肿瘤微环境中可能通过调节免疫细胞功能影响肿瘤进展。如果CLEC4M过表达,可能会增强病原体清除能力,但也可能过度激活免疫反应,导致炎症性疾病;而降低表达则可能削弱免疫防御,增加感染风险。C型凝集素家族的共性包括依赖钙离子(Ca²⁺)的糖类结合能力,以及参与免疫识别、炎症反应和细胞信号传导。该家族成员通常具有保守的碳水化合物识别结构域(CRD, carbohydrate recognition domain),能够识别病原体或异常细胞的糖链结构,从而触发免疫应答。CLEC4M及其家族成员在感染、自身免疫疾病和癌症中具有潜在的治疗靶点价值。

This gene encodes a transmembrane receptor and is often referred to as L-SIGN because of its expression in the endothelial cells of the lymph nodes and liver. The encoded protein is involved in the innate immune system and recognizes numerous evolutionarily divergent pathogens ranging from parasites to viruses, with a large impact on public health. The protein is organized into three distinct domains: an N-terminal transmembrane domain, a tandem-repeat neck domain and C-type lectin carbohydrate recognition domain. The extracellular region consisting of the C-type lectin and neck domains has a dual function as a pathogen recognition receptor and a cell adhesion receptor by binding carbohydrate ligands on the surface of microbes and endogenous cells. The neck region is important for homo-oligomerization which allows the receptor to bind multivalent ligands with high avidity. Variations in the number of 23 amino acid repeats in the neck domain of this protein are common and have a significant impact on ligand binding ability. This gene is closely related in terms of both sequence and function to a neighboring gene (GeneID 30835; often referred to as DC-SIGN or CD209). DC-SIGN and L-SIGN differ in their ligand-binding properties and distribution. Alternative splicing results in multiple variants.[provided by RefSeq, Feb 2009]

这个基因编码的跨膜受体,并且通常被称为L-SIGN,因为其在淋巴结和肝的血管内皮细胞中的表达。所编码的蛋白质是参与先天免疫系统,并认识许多进化分歧病原体从寄生虫病毒,对公众健康有很大的影响。该蛋白质被分为三个不同的结构域:N-末端跨膜结构域,串联重复颈域和C型凝集素的碳水化合物识别结构域。由C型凝集素和颈结构域的胞外区具有双重功能作为病原体识别受体和由微生物和内源性细胞的表面上的结合糖的配体的细胞粘附受体。颈部区域为同型寡聚允许受体结合的多价配体以高亲合力重要。在此蛋白质的颈部域23氨基酸重复数变化是常见的,并且对配体结合的能力的显著影响。该基因是在这两个序列和功能到相邻基因方面密切相关(GeneID 30835;通常被称为DC-SIGN或CD209)。 DC-SIGN和L-SIGN在其配体结合特性和分布不同。选择性剪接产生多个变种。[由RefSeq的,2009年2月提供]

CLEC4M基因的碱基序列:[NCBI]
Loading Gene Browser...
CLEC4M基因的碱基突变:           仅显示部分snp
rs15282       rs475896       rs479448       rs488449       rs538442       rs557094       rs558705       rs560634       rs562607       rs571497       rs582173       rs592102       rs594793       rs655569       rs657855       rs684388       rs687960      

CLEC4M基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
AGGAGCAGAACTTCCTACAG
59
GCCTTCCTGATTTAGGTCTG
58
GATCTACCAGGAGCTGACC
59
CTCCTGGTAGATCTCCTGC
59
GCCTCCTGGAAGAAGATCC
60
CTTGTGGCCATGTATCTGC
59
CCTCCTGGAAGAAGATCCA
58
ATGAAGGAGAGGAGTTGCA
58
TGTCCAAGTGTCCAAGGTC
60
TAAGCTGGGTCAGGTTCTG
59
CACAAGAGCTCTACAGTTCCT
60
CTTGCTCGGATTGTTCCTG
59
CACAAGAGCTCTACAGTTCCT
60
CTTGCTCGGATTGTTCCTG
59
TGAGTGACTCCAAGGAACC
59
ATCTGCTGGAATTGAAAGTTGG
60
CAACAACCAGTGGCATCAG
60
CCAAGACACCCTGTAGAGC
60
CAACAACCAGTGGCATCAG
60
CCAAGACACCCTGTAGAGC
60
      尚未收录相关数据

CLEC4M基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

CLEC4M基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0016021
H7BXU4 (UniProtKB)
IEA
GO:0001618
Q9H2X3 (UniProtKB)
IDA
GO:0001618
Q9H2X3 (UniProtKB)
IMP
GO:0002250
Q9H2X3 (UniProtKB)
IEA
GO:0004872
Q9H2X3 (UniProtKB)
NAS
GO:0005537
Q9H2X3 (UniProtKB)
IEA
GO:0005576
Q9H2X3 (UniProtKB)
IEA
GO:0005737
Q9H2X3 (UniProtKB)
NAS
GO:0005887
Q9H2X3 (UniProtKB)
TAS
GO:0006897
Q9H2X3 (UniProtKB)
IEA
GO:0007159
Q9H2X3 (UniProtKB)
NAS
GO:0009988
Q9H2X3 (UniProtKB)
TAS
GO:0010468
Q9H2X3 (UniProtKB)
IMP
GO:0016020
Q9H2X3 (UniProtKB)
TAS
GO:0019048
Q9H2X3 (UniProtKB)
TAS
GO:0019062
Q9H2X3 (UniProtKB)
TAS
GO:0019079
Q9H2X3 (UniProtKB)
NAS
GO:0019882
Q9H2X3 (UniProtKB)
NAS
GO:0030193
Q9H2X3 (UniProtKB)
IMP
GO:0030246
Q9H2X3 (UniProtKB)
NAS
GO:0030369
Q9H2X3 (UniProtKB)
NAS
GO:0035556
Q9H2X3 (UniProtKB)
NAS
GO:0042605
Q9H2X3 (UniProtKB)
NAS
GO:0045087
Q9H2X3 (UniProtKB)
IEA
GO:0046718
Q9H2X3 (UniProtKB)
IEA
GO:0046790
Q9H2X3 (UniProtKB)
TAS
GO:0046872
Q9H2X3 (UniProtKB)
IEA
GO:0046968
Q9H2X3 (UniProtKB)
NAS
GO:0048306
Q9H2X3 (UniProtKB)
IPI
GO:0075733
Q9H2X3 (UniProtKB)
TAS

可能调控 CLEC4M基因的相关microRNA:     

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
HIV Infections 0.025103474 19 0 BeFree_GAD
Infection 0.013621751 5 0 LHGDN
Hepatitis C 0.01036833 5 0 BeFree_GAD_LHGDN
Severe Acute Respiratory Syndrome 0.007729856 3 0 BeFree_GAD_LHGDN
Sexually Transmitted Diseases 0.002367032 1 0 GAD
von Willebrand Disease, Type 1 0.000271442 1 0 BeFree
Drug usage 0.000271442 1 0 BeFree
Tuberculosis 0.000271442 1 0 BeFree
pathologic fistula 0.000271442 1 0 BeFree

联系方式

山东省济南市章丘区文博路2号 齐鲁师范学院 genelibs生信实验室

山东省济南市高新区舜华路750号大学科技园北区F座4单元2楼

电话: 0531-88819269

E-mail: product@genelibs.com

微信公众号

关注微信订阅号,实时查看信息,关注医学生物学动态。