JMJD6 (jumonji domain containing 6, arginine demethylase and lysine hydroxylase)

symbol:
JMJD6
locus group:
protein-coding gene
location:
17q25.1
gene_family:
alias symbol:
PTDSR1|KIAA0585
alias name:
None
entrez id:
23210
ensembl gene id:
ENSG00000070495
ucsc gene id:
uc002jso.4
refseq accession:
NM_015167
hgnc_id:
HGNC:19355
approved reserved:
2002-10-09
17q25.1
基因染色体位置图

JMJD6(Jumonji Domain Containing 6)是一种含有Jumonji结构域的蛋白质,属于JMJD基因家族。JMJD家族成员通常具有组蛋白去甲基化酶或羟化酶活性,参与表观遗传调控。JMJD6是一种多功能酶,具有精氨酸去甲基化酶和赖氨酸羟化酶的双重功能,主要作用于组蛋白和非组蛋白底物。JMJD6在转录调控、RNA剪接和细胞分化等生物学过程中发挥重要作用。JMJD6的主要作用位点包括细胞核和细胞质,在核内参与染色质重塑和转录调控,在胞质中可能参与RNA代谢。JMJD6突变可能导致其酶活性丧失或改变,影响其正常功能,可能导致发育异常或疾病发生。JMJD6与多种疾病相关,包括癌症、心血管疾病和神经退行性疾病。在多种癌症中,JMJD6表达异常,可能通过调控关键癌基因或抑癌基因的表达促进肿瘤发生发展。JMJD6过表达可能导致细胞增殖加快、凋亡减少,促进肿瘤进展;而降低表达可能影响正常发育过程,导致胚胎发育缺陷。JMJD6还参与血管生成调控,其表达水平变化可能影响心血管系统功能。JMJD6通过调控RNA聚合酶II的活性影响转录延伸过程,并参与选择性剪接调控。JMJD6与BRD4等转录调控因子相互作用,共同调控基因表达。JMJD6基因属于JMJD家族,该家族成员均含有保守的Jumonji结构域,具有氧化酶活性,能够催化组蛋白或非组蛋白底物的修饰,在表观遗传调控中起重要作用。JMJD家族成员广泛参与发育、分化和疾病过程,是重要的表观遗传调控因子。

This gene encodes a nuclear protein with a JmjC domain. JmjC domain-containing proteins are predicted to function as protein hydroxylases or histone demethylases. This protein was first identified as a putative phosphatidylserine receptor involved in phagocytosis of apoptotic cells; however, subsequent studies have indicated that it does not directly function in the clearance of apoptotic cells, and questioned whether it is a true phosphatidylserine receptor. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

该基因编码一个域JmjC结构核蛋白质。 JmjC结构结构域的蛋白质被预测为充当蛋白羟化酶或组蛋白去甲基。该蛋白质最初被鉴定为参与凋亡细胞的吞噬作用的推定磷脂受体;然而,随后的研究表明,它不直接在凋亡细胞的清除作用,并询问它是否是一个真实的磷脂受体。已发现该基因编码不同亚型的多个抄本变形。 [由RefSeq的,2008年7月提供]

JMJD6基因的碱基序列:[NCBI]
Loading Gene Browser...
JMJD6基因的碱基突变:           仅显示部分snp
rs758536       rs1014390       rs2005827       rs2240769       rs2240770       rs2240771       rs2240772       rs2240773       rs2240774       rs2240775       rs2286584       rs2286585       rs2410999       rs3078396       rs3078398       rs3217059       rs7224064      

JMJD6基因在不同组织中的表达:    [UniProt]

基因在不同组织中的表达图
正向引物序列
正向Tm值
反向引物序列
反向Tm值
评分
GACCTTCAGGAGTCCACAG
59
CAGACTCGCACTCTGAGTC
60
CTACTATCGCCATCACCCA
59
TCCAGACTCGCACTATACC
58
ACTACTATCGCCATCACCC
59
GCTGTATCTGTTCTATACCATTTCC
60
TTGGAAGACTACAAGGTGC
57
CACAAACCACCTGTAAGGG
58
TTGGAAGACTACAAGGTGC
57
CACAAACCACCTGTAAGGG
58
GACCTTCAGGAGTCCACAG
59
CAGACTCGCACTCTGAGTC
60
CTACTATCGCCATCACCCA
59
CCCGTGCTGTATCTATACCA
59
CAGGAAGAAGAGGAGGACG
59
GTCCCTAATCCTGGAGGAG
58
ACTACTATCGCCATCACCC
59
GCTGTATCTGTTCTATACCATTTCC
60
CTACTATCGCCATCACCCA
59
GCTGTATCTGTTCTATACCATTTCC
60
      尚未收录相关数据

JMJD6基因(以及对应的蛋白质)的细胞分布位置:

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • 质膜
  • 细胞质
  • 细胞外
  • 高尔基体
  • 囊泡
  • 细胞骨架
  • 内质网
  • 细胞核
  • 内体
  • 溶酶体
  • 线粒体

JMJD6基因的本体(GO)信息:

GO库代码
对应的蛋白质
来源代码
GO:0001822
Q6NYC1 (UniProtKB)
IEA
GO:0002040
Q6NYC1 (UniProtKB)
ISS
GO:0003723
Q6NYC1 (UniProtKB)
TAS
GO:0003727
Q6NYC1 (UniProtKB)
IDA
GO:0004872
Q6NYC1 (UniProtKB)
IEA
GO:0005506
Q6NYC1 (UniProtKB)
IDA
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005515
Q6NYC1 (UniProtKB)
IPI
GO:0005634
Q6NYC1 (UniProtKB)
IDA
GO:0005634
Q6NYC1 (UniProtKB)
IDA
GO:0005654
Q6NYC1 (UniProtKB)
IDA
GO:0005654
Q6NYC1 (UniProtKB)
TAS
GO:0005654
Q6NYC1 (UniProtKB)
TAS
GO:0005654
Q6NYC1 (UniProtKB)
TAS
GO:0005654
Q6NYC1 (UniProtKB)
TAS
GO:0005730
Q6NYC1 (UniProtKB)
IDA
GO:0005829
Q6NYC1 (UniProtKB)
IEA
GO:0005886
Q6NYC1 (UniProtKB)
IEA
GO:0006351
Q6NYC1 (UniProtKB)
IEA
GO:0006355
Q6NYC1 (UniProtKB)
IEA
GO:0006397
Q6NYC1 (UniProtKB)
IEA
GO:0007166
Q6NYC1 (UniProtKB)
IEA
GO:0007507
Q6NYC1 (UniProtKB)
IEA
GO:0008380
Q6NYC1 (UniProtKB)
IEA
GO:0018395
Q6NYC1 (UniProtKB)
IDA
GO:0030324
Q6NYC1 (UniProtKB)
IEA
GO:0030529
Q6NYC1 (UniProtKB)
IEA
GO:0032452
Q6NYC1 (UniProtKB)
TAS
GO:0032452
Q6NYC1 (UniProtKB)
TAS
GO:0032452
Q6NYC1 (UniProtKB)
TAS
GO:0032452
Q6NYC1 (UniProtKB)
TAS
GO:0033077
Q6NYC1 (UniProtKB)
IEA
GO:0033746
Q6NYC1 (UniProtKB)
IDA
GO:0033749
Q6NYC1 (UniProtKB)
IDA
GO:0042116
Q6NYC1 (UniProtKB)
IEA
GO:0042802
Q6NYC1 (UniProtKB)
IDA
GO:0042802
Q6NYC1 (UniProtKB)
IPI
GO:0042803
Q6NYC1 (UniProtKB)
IEA
GO:0043654
Q6NYC1 (UniProtKB)
IEA
GO:0048024
Q6NYC1 (UniProtKB)
IMP
GO:0048821
Q6NYC1 (UniProtKB)
IEA
GO:0055114
Q6NYC1 (UniProtKB)
IEA
GO:0060041
Q6NYC1 (UniProtKB)
IEA
GO:0070078
Q6NYC1 (UniProtKB)
IDA
GO:0070079
Q6NYC1 (UniProtKB)
IDA
GO:0070815
Q6NYC1 (UniProtKB)
IDA

可能调控 JMJD6基因的相关microRNA:     

MINT

BioGrid

IntAct

mentha

String

基因与其他基因之间的相互作用关系图
序号 作用方式 资源库来源/分值 基因名称 基因名称
疾病名称 关系值 NofPmids NofSnps 来源
疾病名称 关系值 NofPmids NofSnps 来源
Cystic Fibrosis 0.00272435 1 0 LHGDN
Bronchiectasis 0.00272435 1 0 LHGDN
Choriocarcinoma 0.000271442 1 0 BeFree
Hepatitis B 0.000271442 1 0 BeFree
Malignant tumor of colon 0.000271442 1 0 BeFree
Von Hippel-Lindau Syndrome 0.000271442 1 0 BeFree
Breast Carcinoma 0.000271442 1 0 BeFree
Periodontitis 0.000271442 1 0 BeFree
Brain Neoplasms 0.000271442 1 0 BeFree
Gingivitis 0.000271442 1 0 BeFree

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