Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
GABRD	2563	bcgsc.ca	37	1	1957037	1957037	+	Silent	SNP	T	T	C	rs2229110	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	GABRD-92	NM_000815	exon4	c.T330C	p.G110G	CCTGGGTCTGGAC	.	420	9	270	0	T|0.334;C|0.666	0	0	0	0	0
PEX10	5192	bcgsc.ca	37	1	2338015	2338015	+	Missense_Mutation	SNP	T	T	C	rs34154371	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PEX10-90	NM_153818	exon5	c.A880G	p.T294A	ACAGGGTGCACAG	.	42	34	12	0	T|0.984;C|0.016	18	2	16	0	0
SPRR3	6707	bcgsc.ca	37	1	152975763	152975763	+	Silent	SNP	C	C	A	rs1977734	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SPRR3-45	NM_001097589	exon2	c.C267A	p.G89G	GCCAGGCTGTACC	.	132	6	131	2	T|0.136;G|0.132;C|0.344;A|0.387	29	20	0	0	9
CHIT1	1118	bcgsc.ca	37	1	203186950	203186950	+	Nonsense_Mutation	SNP	C	C	T	rs201320385	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CHIT1-90	NM_003465	exon10	c.G1073A	p.W358X	AGTGCCCAGACCA	.	57	6	52	0	C|0.989;T|0.011	2	2	0	0	0
IKBKE	9641	bcgsc.ca	37	1	206650065	206650065	+	Silent	SNP	A	A	G	rs41296034	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	IKBKE-1061	NM_001193322	exon7	c.A585G	p.Q195Q	CCAGCAAAAAGCG	.	177	7	158	0	A|0.947;G|0.053	0	0	0	0	0
OR2T11	127077	ucsc.edu;bcgsc.ca	37	1	248789753	248789753	+	Missense_Mutation	SNP	G	G	C	rs28555577	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR2T11-69	NM_001001964	exon1	c.C677G	p.P226R	GCAGAGGGCATGC	.	24	4	80	0	G|0.888;C|0.112	0	0	0	0	0
OR2T27	403239	bcgsc.ca	37	1	248813280	248813280	+	Silent	SNP	C	C	T	rs116125618	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR2T27-47	NM_001001824	exon1	c.G906A	p.Q302Q	AACCTTCTGTAGG	.	69	5	158	0	C|0.922;T|0.078	0	0	0	0	0
TUBB8	347688	broad.mit.edu	37	10	95170	95170	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TUBB8-69	NM_177987	exon1	c.G9A	p.E3E	CACGATCTCCCTC	.	176	11	62	0	.	0	0	0	0	0
MYO3A	53904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26357698	26357698	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MYO3A-1007	NM_017433	exon12	c.A1055G	p.N352S	TGCAGAATACAGT	.	30	9	24	0	.	0	0	0	0	0
AGAP11	119385	bcgsc.ca	37	10	88768253	88768253	+	Missense_Mutation	SNP	A	A	G	rs2641563	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_133447	exon12	c.A244G	p.I82V	ACGCCCATTTGCA	.	215	10	170	0	A|0.215;G|0.785	1	1	0	0	0
LGI1	9211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95537350	95537350	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	LGI1-517	NM_005097	exon4	c.G407T	p.R136L	CTTTCCGGGGACT	.	96	32	65	0	.	0	0	0	0	0
CTBP2	1488	ucsc.edu	37	10	126715075	126715075	+	Silent	SNP	T	T	C	rs3781413	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CTBP2-90	NM_022802	exon1	c.A1254G	p.A418A	GGTGGCTGCCGTC	.	43	23	12	2	T|0.892;C|0.108	0	0	0	0	0
MUC6	4588	bcgsc.ca	37	11	1017710	1017710	+	Missense_Mutation	SNP	G	G	T	rs113964902		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MUC6-23	NM_005961	exon31	c.C5091A	p.H1697Q	GGAAGTGTGTGAA	.	739	28	652	14	G|0.500;T|0.500	0	0	0	0	0
OR52E6	390078	broad.mit.edu	37	11	5862278	5862278	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR52E6-68	NM_001005167	exon1	c.G850T	p.V284F	GAGGAACAACCAC	.	127	5	114	0	.	0	0	0	0	0
DNHD1	144132	broad.mit.edu	37	11	6569896	6569896	+	Missense_Mutation	SNP	G	G	A	rs11606889	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DNHD1-24	NM_144666	exon24	c.G7120A	p.V2374M	TATGTGGTGGACC	.	47	3	60	1	G|0.887;A|0.113	0	0	0	0	0
SAA2-SAA4	100528017	broad.mit.edu	37	11	18257405	18257405	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_001199744	exon4	c.G303T	p.S101S	GAAAAACGAACGC	.	120	5	137	0	.	2	2	0	0	0
TENM4	26011	bcgsc.ca	37	11	78372536	78372536	+	Silent	SNP	G	G	A	rs2277277	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_001098816	exon33	c.C7509T	p.L2503L	GTGGATGAGCTCG	.	194	8	195	2	G|0.593;A|0.407	1	1	0	0	0
MTMR2	8898	hgsc.bcm.edu	37	11	95595266	95595434	+	Frame_Shift_Del	DEL	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	CCTAAAGAAGGAAAGAAAAAATAATTAAAACTGAGCAATTAATACTGTCCAATTATAGAGCTGATCAAAATCTTAATCAGAAATGCTTTAATTAGAAATGATCAGAAATGAACAAAACTAGCTACAAACAACACACTCATGTACATACAAAAATCTAATCTGACTCTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MTMR2-91	NM_016156	exon5	c.358_358del	p.120_120del	GGGGATCCTAAAG	.	31	0	48	0	.	0	0	0	0	0
ZC3H12C	85463	bcgsc.ca	37	11	110035301	110035301	+	Silent	SNP	A	A	G	rs1026607	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ZC3H12C-68	NM_033390	exon6	c.A1491G	p.T497T	AAGGACACAAGTC	.	94	5	95	0	A|0.729;G|0.271	1	1	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	348	15	272	18	G|0.998;A|0.002	806	506	299	0	1
PA2G4	5036	broad.mit.edu;bcgsc.ca	37	12	56504205	56504205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PA2G4-68	NM_006191	exon8	c.T652A	p.F218I	GCTGAATTTGAGG	.	251	11	153	0	.	178	175	3	0	0
CCDC62	84660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123273380	123273380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CCDC62-157	NM_201435	exon5	c.C574T	p.R192C	GCCCTACGTGATG	.	176	46	131	0	.	0	0	0	0	0
NCOR2	9612	ucsc.edu	37	12	124856618	124856618	+	Silent	SNP	A	A	G	rs7961196	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NCOR2-229	NM_006312	exon22	c.T2757C	p.A919A	GCAGGTAGCACTG	.	58	28	15	0	A|0.698;G|0.302	3	1	2	0	0
PABPC3	5042	bcgsc.ca	37	13	25671122	25671122	+	Silent	SNP	C	C	T	rs79072440	bycluster;byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PABPC3-72	NM_030979	exon1	c.C786T	p.Y262Y	AATTTACGTTGGT	.	125	7	127	1	C|0.999;T|0.001	265	0	265	0	0
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295677	20295677	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C70G	p.Q24E	GATATTCAGCTCC	.	356	37	239	0	.	0	0	0	0	0
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295722	20295722	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C115G	p.L39V	ATCATCCTCCCTG	.	260	30	210	0	.	0	0	0	0	0
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20295790	20295790	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C183G	p.F61L	CTATTTCTTTCTG	.	213	30	191	0	.	0	0	0	0	0
OR4N2	390429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20295819	20295819	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C212G	p.A71G	TGGATGCATCCTA	.	240	26	183	0	.	0	0	0	0	0
OR4N2	390429	hgsc.bcm.edu;bcgsc.ca	37	14	20295862	20295862	+	Silent	SNP	C	C	T	rs139052676	byfrequency;alternate_allele	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR4N2-71	NM_001004723	exon1	c.C255T	p.F85F	GGACTTCCTCTCT	.	232	15	192	0	C|1.000;G|0.000	0	0	0	0	0
C14orf93	60686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23456429	23456429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C14orf93-91	NM_021944	exon7	c.G1612A	p.E538K	TTTATTCATCCTT	.	111	14	83	0	.	2	2	0	0	0
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24799400	24799400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ADCY4-93	NM_001198592	exon8	c.G1032T	p.M344I	CAGGCCCATGCGC	.	127	22	113	0	.	2	2	0	0	0
INSM2	84684	broad.mit.edu	37	14	36004658	36004658	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	INSM2-226	NM_032594	exon1	c.C1200A	p.G400G	TCAGGGCCCCTAC	.	76	7	16	0	.	0	0	0	0	0
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45564512	45564512	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRPF39-70	NM_017922	exon2	c.G70C	p.V24L	GAGGTAGTGGTAG	.	239	50	226	0	.	0	0	0	0	0
PRKCH	5583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	61917623	61917623	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRKCH-1063	NM_006255	exon6	c.C766G	p.P256A	AAAGTGCCAACAT	.	150	24	139	1	.	0	0	0	0	0
WDR25	79446	bcgsc.ca	37	14	100996312	100996312	+	Silent	SNP	T	T	C	rs13065	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	WDR25-90	NM_001161476	exon7	c.T1569C	p.Y523Y	CACCTATCACCCC	.	200	7	89	1	T|0.409;C|0.591	23	23	0	0	0
SPTBN5	51332	broad.mit.edu	37	15	42167249	42167249	+	Silent	SNP	T	T	C	rs62002142		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SPTBN5-91	NM_016642	exon23	c.A4188G	p.A1396A	CTCCTTTGCATCC	.	80	4	50	0	T|0.995;C|0.005	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	5	5	0	0	A|0.226;C|0.774	0	0	0	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100871168	100871168	+	Missense_Mutation	SNP	C	C	T	rs143689354	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ADAMTS17-228	NM_139057	exon3	c.G542A	p.R181K	TTGCGCCTGATCA	.	189	5	98	0	C|0.999;T|0.001	2	2	0	0	0
MLST8	64223	ucsc.edu	37	16	2256104	2256104	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MLST8-392	NM_001199174	exon2	c.C18A	p.G6G	CCCAGGCACGGTG	.	260	4	115	2	.	15	10	5	0	0
NLRC5	84166	broad.mit.edu;bcgsc.ca	37	16	57101716	57101716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NLRC5-159	NM_032206	exon35	c.C4475A	p.S1492Y	TGCTGTCCCTCTC	.	198	7	127	0	.	14	13	1	0	0
SPG7	6687	hgsc.bcm.edu	37	16	89574945	89574945	+	Silent	SNP	G	G	A	rs187330648	by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SPG7-226	NM_199367	exon1	c.G120A	p.G40G	GAGGGGGCGGCCG	.	6	6	0	0	G|0.979;A|0.021	2	1	1	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	6	5	0	0	T|0.657;C|0.343	1	0	1	0	0
WDR16	146845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9501596	9501596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	WDR16-71	NM_145054	exon5	c.C582G	p.I194M	AAAAATCTGGCCA	.	39	16	41	0	.	0	0	0	0	0
MYOCD	93649	hgsc.bcm.edu;bcgsc.ca	37	17	12626174	12626174	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	MYOCD-93	NM_001146312	exon5	c.A264G	p.A88A	CACTGCAGAGAGG	.	61	12	98	0	.	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	6	6	0	0	G|0.001;C|0.999	0	0	0	0	0
CIDEA	1149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	12274230	12274230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CIDEA-91	NM_001279	exon4	c.G469A	p.V157M	TACTCCGTGTCCT	.	83	12	114	0	.	0	0	0	0	0
DCC	1630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	50976874	50976874	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DCC-225	NM_005215	exon23	c.G3234A	p.P1078P	AGAGCCGCCAATT	.	65	39	78	0	.	0	0	0	0	0
TMEM259	91304	hgsc.bcm.edu	37	19	1010396	1010396	+	Missense_Mutation	SNP	G	G	C	rs77868901		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_001033026	exon11	c.C1816G	p.P606A	AGGCCGGGCTAGG	.	25	7	0	0	G|0.970;C|0.030	139	0	139	0	0
TJP3	27134	hgsc.bcm.edu	37	19	3739077	3739077	+	Missense_Mutation	SNP	C	C	T	rs138219655		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TJP3-92	NM_001267561	exon13	c.C1603T	p.R535C	GCGGTGCGCATGG	.	20	14	2	0	C|1.000;T|0.000	0	0	0	0	0
TJP3	27134	hgsc.bcm.edu	37	19	3739107	3739107	+	Missense_Mutation	SNP	C	C	T	rs35628485	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TJP3-92	NM_001267561	exon13	c.C1633T	p.R545W	CAAGAGCGGGGCA	.	9	7	2	0	C|0.996;T|0.004	0	0	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13319693	13319693	+	Silent	SNP	A	A	G	rs16051	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CACNA1A-67	NM_001127221	exon46	c.T6660C	p.H2220H	CGGGGGATGGTGG	.	21	7	0	0	A|0.360;G|0.640	0	0	0	0	0
DYRK1B	9149	broad.mit.edu	37	19	40316857	40316857	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DYRK1B-337	NM_004714	exon10	c.G1481T	p.G494V	GGGGGCCCAGGGC	.	79	4	50	0	.	54	54	0	0	0
NR1H2	7376	hgsc.bcm.edu	37	19	50881825	50881825	+	Silent	SNP	G	G	A	rs55817866	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NR1H2-186	NM_007121	exon6	c.G519A	p.Q173Q	GAAACAGCAGCAG	.	135	7	47	0	G|0.903;A|0.097	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	5	4	0	0	T|0.228;C|0.772	1	1	0	0	0
GPR32	2854	bcgsc.ca	37	19	51274851	51274851	+	Missense_Mutation	SNP	A	A	C	rs78840344		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	GPR32-91	NM_001506	exon1	c.A994C	p.T332P	TCTTTGACTTCTG	.	106	9	72	2	.	4	4	0	0	0
MIR520C	574476	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54210730	54210730	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	.	.	.	.	CTAGAGGGAAGCA	.	203	26	119	0	.	0	0	0	0	0
PRKD3	23683	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	37543587	37543587	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRKD3-543	NM_005813	exon1	c.T81A	p.S27S	ACACGGAGAAGCA	.	124	10	126	0	.	0	0	0	0	0
SIX3	6496	hgsc.bcm.edu	37	2	45171842	45171842	+	Silent	SNP	A	A	G	rs62840660	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	4	4	0	0	A|0.059;G|0.941	0	0	0	0	0
PRR21	643905	bcgsc.ca	37	2	240982103	240982103	+	Silent	SNP	A	A	G	rs74344384	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PRR21-70	NM_001080835	exon1	c.T297C	p.H99H	AGAGGCATGGACG	.	84	30	123	9	A|0.951;G|0.049	0	0	0	0	0
SNPH	9751	hgsc.bcm.edu	37	20	1286662	1286662	+	Silent	SNP	G	G	A	rs62187495	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SNPH-92	NM_014723	exon6	c.G1449A	p.P483P	CCAGCCGAGTCCC	.	8	5	1	0	G|0.987;A|0.013	1	1	0	0	0
PLCB4	5332	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9353694	9353694	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PLCB4-274	NM_182797	exon10	c.C687T	p.I229I	TTTCAGCAATGGA	.	98	13	79	1	.	0	0	0	0	0
KIF3B	9371	bcgsc.ca	37	20	30915461	30915461	+	Silent	SNP	T	T	C	rs1129012	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	KIF3B-517	NM_004798	exon7	c.T1965C	p.Y655Y	CCGATATAGGGTG	.	109	5	80	0	A|0.000;C|0.216;G|0.000;T|0.784	0	0	0	0	0
COL20A1	57642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61957493	61957493	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	COL20A1-90	NM_020882	exon30	c.G3448A	p.G1150S	CCCCCTGGCCCCA	.	116	27	74	1	.	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46929331	46929331	+	Missense_Mutation	SNP	C	C	G	rs187670025		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	COL18A1-90	NM_030582	exon39	c.C3842G	p.P1281R	CCTACCCGCGGCG	.	10	4	0	0	C|0.994;G|0.006	22	14	8	0	0
NEFH	4744	bcgsc.ca	37	22	29885861	29885861	+	Silent	SNP	T	T	C	rs165923	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NEFH-90	NM_021076	exon4	c.T2232C	p.A744A	AGAAGCTAAGTCC	.	210	8	418	2	T|0.192;C|0.808	11	11	0	0	0
FBXO7	25793	bcgsc.ca	37	22	32875190	32875190	+	Missense_Mutation	SNP	G	G	A	rs11107	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FBXO7-228	NM_012179	exon2	c.G345A	p.M115I	TAGCATGCAGGAT	.	80	5	110	0	G|0.577;N|0.000	3	3	0	0	0
GRM7	2917	bcgsc.ca	37	3	7620789	7620789	+	Silent	SNP	T	T	C	rs1485175	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	GRM7-526	NM_000844	exon8	c.T2196C	p.Y732Y	AGACTATGATGAA	.	237	8	172	1	T|0.451;C|0.549	0	0	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395586	49395586	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	GPX1-68	.	.	.	.	ATTCTCGATAAGT	.	181	9	45	0	.	110	109	1	0	0
DPPA2	151871	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	109027035	109027035	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	DPPA2-93	NM_138815	exon6	c.A502T	p.R168X	CTGCTCTCTCATT	.	151	37	117	1	.	0	0	0	0	0
ADPRH	141	broad.mit.edu	37	3	119306669	119306669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ADPRH-91	NM_001125	exon5	c.A1018G	p.T340A	GAAGAGACAGCTA	.	58	4	50	0	.	0	0	0	0	0
MAATS1	89876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119462961	119462961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_033364	exon14	c.G1820A	p.R607Q	GCCAGCGGCGGGT	.	134	23	114	0	.	3	3	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	7	4	0	0	C|0.900;T|0.100	0	0	0	0	0
COL6A6	131873	bcgsc.ca	37	3	130361856	130361856	+	Missense_Mutation	SNP	G	G	A	rs16830494	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	COL6A6-76	NM_001102608	exon30	c.G5216A	p.R1739Q	ATGTGCGAGACCG	.	86	6	83	1	G|0.887;A|0.113	0	0	0	0	0
MUC20	200958	bcgsc.ca	37	3	195453257	195453257	+	Missense_Mutation	SNP	G	G	A	rs3828406	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_152673	exon3	c.G1270A	p.A424T	GACATCGCAACCA	.	226	9	212	1	G|0.643;A|0.357	3	3	0	0	0
PAK2	5062	bcgsc.ca	37	3	196509544	196509544	+	Silent	SNP	T	T	C	rs79361419	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PAK2-957	NM_002577	exon2	c.T27C	p.D9D	GGAAGATAAGCCT	.	160	18	149	3	T|0.994;C|0.006	0	0	0	0	0
PAK2	5062	bcgsc.ca	37	3	196509577	196509577	+	Missense_Mutation	SNP	C	C	G	rs76714248	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PAK2-957	NM_002577	exon2	c.C60G	p.S20R	GAGCAGCACCATC	.	177	20	154	4	C|0.982;G|0.018	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	15	6	0	0	C|0.960;G|0.040	11	7	4	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389130	1389130	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CRIPAK-90	NM_175918	exon1	c.G831A	p.G277G	ATGTGGGGTGCCC	.	99	7	0	0	.	9	6	3	0	0
ANKRD17	26057	ucsc.edu;bcgsc.ca	37	4	73956553	73956553	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ANKRD17-234	NM_032217	exon29	c.T6792C	p.S2264S	ATGAGCAGAAGTA	.	224	64	152	2	.	17	14	3	0	0
SDAD1	55153	bcgsc.ca	37	4	76878716	76878716	+	Missense_Mutation	SNP	G	G	C	rs2242471	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SDAD1-91	NM_018115	exon19	c.C1724G	p.S575C	TTCTGGGATTTCC	.	56	4	31	0	G|0.688;C|0.312	21	21	0	0	0
PDLIM4	8572	hgsc.bcm.edu	37	5	131607588	131607588	+	Missense_Mutation	SNP	G	G	T	rs4877	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PDLIM4-91	NM_003687	exon6	c.G775T	p.G259C	CGCTGCGGCCACG	.	31	17	1	0	G|0.858;T|0.142	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	5	5	0	0	G|0.980;C|0.020	0	0	0	0	0
PCDHA8	56140	broad.mit.edu;bcgsc.ca	37	5	140221312	140221312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PCDHA8-92	NM_031856	exon1	c.A406G	p.K136E	CGGGTAAAAGACC	.	278	8	147	0	.	0	0	0	0	0
PCDHB8	56128	hgsc.bcm.edu	37	5	140559342	140559342	+	Missense_Mutation	SNP	T	T	C	rs138970173	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PCDHB8-131	NM_019120	exon1	c.T1727C	p.L576P	CCGAGCTGGTGCC	.	106	9	3	0	T|1.000;C|0.000	29	28	1	0	0
PCDHB12	56124	hgsc.bcm.edu	37	5	140590139	140590139	+	Missense_Mutation	SNP	G	G	A	rs61741192	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PCDHB12-93	NM_018932	exon1	c.G1660A	p.A554T	CTGGACGCCAACG	.	267	161	5	0	G|0.875;A|0.125	61	60	1	0	0
C6orf136	221545	hgsc.bcm.edu	37	6	30615260	30615260	+	Silent	SNP	C	C	T	rs3132594	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C6orf136-90	NM_001161376	exon1	c.C252T	p.R84R	GAGGCGCTGCCGG	.	10	7	0	0	C|0.944;T|0.056	3	1	2	0	0
C6orf15	29113	bcgsc.ca	37	6	31079994	31079994	+	Missense_Mutation	SNP	C	C	T	rs2233976	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	C6orf15-90	NM_014070	exon2	c.G142A	p.G48R	GTTGTCCGAGCTG	.	187	6	135	0	C|0.919;T|0.081	0	0	0	0	0
HLA-B	3106	bcgsc.ca;mdanderson.org	37	6	31324100	31324100	+	Missense_Mutation	SNP	G	G	T	rs1050654	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	HLA-B-90	NM_005514	exon3	c.C463A	p.R155S	AGGAGCGCAGGTC	.	262	56	31	0	T|0.427;G|0.573	384	384	0	0	0
HLA-B	3106	broad.mit.edu	37	6	31324604	31324604	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	HLA-B-90	NM_005514	exon2	c.204delA	p.R68fs	CTCCTCTCTCGGA	.	174	11	47	0	.	0	0	0	0	0
PBX2	5089	hgsc.bcm.edu	37	6	32157639	32157639	+	Silent	SNP	C	C	T	rs169503	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PBX2-91	NM_002586	exon1	c.G54A	p.L18L	CAATCCCAGGCCC	.	11	6	0	0	C|0.874;T|0.126	1	0	1	0	0
CNPY3	10695	hgsc.bcm.edu;broad.mit.edu	37	6	42897358	42897363	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	TGCTGC	TGCTGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CNPY3-69	NM_006586	exon1	c.50_55del	p.17_19del	TTCCCTTGCTGCT	.	43	0	5	0	.	0	0	0	0	0
HTR1B	3351	bcgsc.ca	37	6	78172260	78172260	+	Silent	SNP	C	C	G	rs6296	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	HTR1B-90	NM_000863	exon1	c.G861C	p.V287V	TTGGTTCACATAC	.	63	4	34	0	C|0.650;G|0.350	2	2	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	5	5	0	0	T|0.089;G|0.911	0	0	0	0	0
UTRN	7402	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	144878365	144878365	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	UTRN-95	NM_007124	exon49	c.G7207C	p.E2403Q	CTCCTGGAGGAAT	.	153	11	120	0	.	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772190	149772190	+	Missense_Mutation	SNP	G	G	A	rs112722576		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_207360	exon6	c.C1213T	p.P405S	GCGGAGGCGGGAG	.	5	5	0	0	G|0.668;A|0.332	0	0	0	0	0
SYNE1	23345	bcgsc.ca	37	6	152576080	152576080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SYNE1-607	NM_182961	exon104	c.G19405T	p.D6469Y	CTGAGTCTAGCAA	.	122	6	96	0	.	0	0	0	0	0
FBXO5	26271	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	153296478	153296481	+	Frame_Shift_Del	DEL	TAAG	TAAG	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	TAAG	TAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FBXO5-658	NM_012177	exon2	c.379_382del	p.127_128del	TACTATTAAGTGT	.	133	18	114	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	6	6	0	0	C|0.329;G|0.671	4	0	4	0	0
OR2AE1	81392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99473846	99473846	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	OR2AE1-90	NM_001005276	exon1	c.A811G	p.K271E	CAACTTTGTTCTG	.	69	8	93	0	.	0	0	0	0	0
ZC3HC1	51530	ucsc.edu;bcgsc.ca	37	7	129664312	129664312	+	Missense_Mutation	SNP	T	T	C	rs1464890	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ZC3HC1-90	NM_016478	exon7	c.A811G	p.T271A	AACATGTTATCAG	.	54	5	55	0	A|0.003;C|0.460	20	20	0	0	0
TAS2R38	5726	bcgsc.ca	37	7	141672705	141672705	+	Missense_Mutation	SNP	G	G	A	rs1726866	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	TAS2R38-92	NM_176817	exon1	c.C785T	p.A262V	AAGGCAGCACAGG	.	207	6	170	0	G|0.560;A|0.440	0	0	0	0	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216707	3216707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	CSMD1-86	NM_033225	exon21	c.C3271T	p.R1091C	ACACACGGCGGCC	.	134	23	68	0	.	0	0	0	0	0
EGR3	1960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22548147	22548147	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	EGR3-90	NM_004430	exon2	c.T1003A	p.C335S	ACTCGCAGGCAAA	.	313	123	90	0	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998514	144998514	+	Silent	SNP	C	C	T	rs75586449	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PLEC-141	NM_201380	exon31	c.G5994A	p.A1998A	GTTCTCCGCCTCC	.	5	5	0	0	C|0.961;T|0.039	7	1	6	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998793	144998793	+	Silent	SNP	C	C	T	rs186670912	by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PLEC-141	NM_201380	exon31	c.G5715A	p.L1905L	GCTGGCCAGCAGC	.	10	6	2	0	C|0.997;T|0.003	9	3	6	0	0
KIAA1045	23349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34976195	34976195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	KIAA1045-69	NM_015297	exon4	c.C611T	p.T204M	GCCTCACGGAGAC	.	79	22	71	0	.	0	0	0	0	0
FRMPD1	22844	ucsc.edu;bcgsc.ca	37	9	37745413	37745413	+	Silent	SNP	G	G	A	rs3747541	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FRMPD1-159	NM_014907	exon16	c.G3384A	p.E1128E	GGAGGAGTCTAGG	.	65	6	73	0	G|0.618;A|0.382	0	0	0	0	0
SLC34A3	142680	hgsc.bcm.edu	37	9	140130532	140130532	+	Silent	SNP	T	T	C	rs144666114	byfrequency	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	SLC34A3-90	NM_001177317	exon13	c.T1464C	p.A488A	GGTGGCTGGGGTC	.	72	4	5	0	T|1.000;C|0.000	0	0	0	0	0
ASMTL	8623	broad.mit.edu;bcgsc.ca	37	X	1538001	1538001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	ASMTL-62	NM_004192	exon10	c.T1252C	p.Y418H	GGTAGTACGCATC	.	207	10	75	0	.	1	1	0	0	0
PDK3	5165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24517001	24517001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PDK3-377	NM_005391	exon3	c.C304T	p.P102S	GAGGATCCACAGG	.	133	46	100	0	.	0	0	0	0	0
PCSK1N	27344	hgsc.bcm.edu	37	X	48690749	48690749	+	Silent	SNP	C	C	T	rs11538178		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	PCSK1N-130	NM_013271	exon2	c.G117A	p.E39E	GCGGGGCTCCTGC	.	11	11	0	0	C|0.762;T|0.238	0	0	0	0	0
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	NUDT11-130	NM_018159	wholegene			ACTTCATCCTCGA	.	149	49	16	0	.	0	0	0	0	0
KIAA1210	57481	broad.mit.edu	37	X	118219366	118219366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	KIAA1210-67	NM_020721	exon12	c.A4828G	p.T1610A	CCTTAGTCTCAGC	.	97	4	60	0	.	0	0	0	0	0
HLA-B	3106	broad.mit.edu	37	6	31324601	31324602	+	Frame_Shift_Ins	INS	-	-	G	rs9281379	bycluster	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	HLA-B-90	NM_005514	exon2	c.207_208insC	p.E69fs	CGGCTCCTCTCTC	.	177	9	48	0	.	0	0	0	0	0
LURAP1L	286343	broad.mit.edu	37	9	12775861	12775862	+	In_Frame_Ins	INS	-	-	GGCGGCGGC	rs139315731	bycluster;by1000genomes	TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	.	NM_203403	exon1	c.147_148insGGCGGCGGC	p.G49delinsGGGG	TGGTGGTGGCGGC	.	16	9	6	0	.	0	0	0	0	0
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150884636	150884637	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5JC-01A-11D-A29I-10	TCGA-OR-A5JC-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4d71931f-ab18-41cb-89e6-1924e9c5df4d	bfb53fdb-f499-4cae-9016-3fcdcc401716	.	FATE1-131	NM_033085	exon1	c.C46A	p.L16M	ATGTCCCTGGCAG	.	286	30	160	0	.	0	0	0	0	0