Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	6	6	0	0	A|0.047;C|0.953	0	0	0	0	0
PER3	8863	ucsc.edu	37	1	7890055	7890055	+	Silent	SNP	T	T	A	rs11121034	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PER3-93	NM_016831	exon18	c.T3021A	p.A1007A	CAGCGCTCTGTCC	.	68	8	108	2	T|0.954;A|0.046	4	4	0	0	0
TMEM201	199953	hgsc.bcm.edu	37	1	9667767	9667767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TMEM201-68	NM_001130924	exon7	c.G1313T	p.R438L	CTCCTCGACGGAC	.	50	3	57	0	.	1	1	0	0	0
AKR7A3	22977	bcgsc.ca	37	1	19611227	19611227	+	Silent	SNP	G	G	A	rs1065658	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	AKR7A3-90	NM_012067	exon5	c.C657T	p.P219P	GCCCACGGGCTGT	.	106	6	124	1	G|0.842;A|0.158	5	5	0	0	0
EPHA8	2046	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22903176	22903176	+	Missense_Mutation	SNP	G	G	C	rs62642541	byfrequency;alternate_allele	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	EPHA8-1380	NM_020526	exon3	c.G626C	p.R209P	TGGTGCGCAATCT	.	117	29	146	0	G|0.999;A|0.001	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	18	18	0	0	G|0.061;T|0.939	0	0	0	0	0
EPHA10	284656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38192880	38192880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	EPHA10-1246	NM_001099439	exon8	c.G1666A	p.A556T	CTGAGGCAGCTGG	.	107	30	148	0	.	0	0	0	0	0
BMP8A	353500	hgsc.bcm.edu	37	1	39957913	39957913	+	Missense_Mutation	SNP	A	A	G	rs4660269	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	BMP8A-90	NM_181809	exon1	c.A250G	p.M84V	CACGCCATGGCTG	.	6	6	0	0	A|0.302;G|0.698	0	0	0	0	0
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150902468	150902468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	SETDB1-228	NM_012432	exon3	c.G286C	p.V96L	TCTTTGGTGAAGG	.	96	19	92	0	.	2	2	0	0	0
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153911506	153911506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	DENND4B-69	NM_014856	exon13	c.G1835A	p.R612Q	CGTTCCCGGGATT	.	106	17	110	0	.	1	1	0	0	0
METTL18	92342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	169762072	169762072	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	METTL18-90	NM_033418	exon2	c.A765G	p.P255P	TACTTTTGGTTTC	.	121	14	88	0	.	32	22	8	2	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	4	4	0	0	T|0.229;C|0.771	1	0	1	0	0
TMEM63A	9725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226050027	226050027	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TMEM63A-91	NM_014698	exon13	c.C976G	p.R326G	TCATCCGTGTGTA	.	142	24	175	0	.	9	7	2	0	0
ZBTB18	10472	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	244217637	244217637	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_205768	exon2	c.C561T	p.A187A	GGCGGCCGAGCCT	.	206	52	158	1	.	0	0	0	0	0
OR6F1	343169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247875887	247875887	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	OR6F1-68	NM_001005286	exon1	c.C171A	p.T57T	CATGGGGGTATGC	.	94	9	80	0	.	0	0	0	0	0
OR14I1	401994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248845366	248845366	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	OR14I1-46	NM_001004734	exon1	c.C240T	p.I80I	GTTACGGATGGAT	.	521	94	431	0	.	0	0	0	0	0
FRMD4A	55691	broad.mit.edu	37	10	13699134	13699142	+	In_Frame_Del	DEL	CGCCCCCCG	CGCCCCCCG	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FRMD4A-229	NM_018027	exon22	c.2447_2455del	p.816_819del	ACACACCGCCCCC	.	16	6	9	0	.	0	0	0	0	0
RBP3	5949	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	48382020	48382020	+	Missense_Mutation	SNP	C	C	T	rs140740560		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RBP3-153	NM_002900	exon4	c.G3629A	p.G1210E	GTCACCCCCACCC	.	88	21	106	1	C|1.000;T|0.000	0	0	0	0	0
VSTM4	196740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50311823	50311823	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	VSTM4-154	NM_144984	exon3	c.A540T	p.A180A	TAAGTCTGCGGTG	.	143	32	153	0	.	0	0	0	0	0
CRTAC1	55118	bcgsc.ca	37	10	99696003	99696003	+	Silent	SNP	G	G	A	rs35027739	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CRTAC1-95	NM_001206528	exon3	c.C345T	p.I115I	GACCCCGATGGCG	.	153	5	135	0	G|0.861;A|0.139	0	0	0	0	0
FAM178A	55719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102684506	102684506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_001136123	exon5	c.C1748T	p.S583L	AGAGTTCAGGAAA	.	74	20	73	0	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	10	10	0	0	A|0.009;G|0.991	1	0	1	0	0
C10orf137	26098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	127422004	127422004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	C10orf137-590	NM_001202438	exon10	c.C1160T	p.P387L	AAATTCCCAATTT	.	66	13	48	0	.	0	0	0	0	0
MGMT	4255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	131565182	131565182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MGMT-1108	NM_002412	exon5	c.G638T	p.G213V	GCTTGGGAGGGAG	.	87	24	123	0	.	60	50	10	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	15	8	1	0	C|0.860;T|0.140	36	15	21	0	0
EPS8L2	64787	hgsc.bcm.edu	37	11	725736	725736	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	EPS8L2-91	NM_022772	exon17	c.G1569A	p.E523E	GCTGGAGGACGGC	.	19	9	0	0	.	0	0	0	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651229	1651229	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	KRTAP5-5-23	NM_001001480	exon1	c.G159A	p.A53A	CTGTGCGGGCTGT	.	69	14	41	0	.	0	0	0	0	0
SAA2	6289	bcgsc.ca	37	11	18266989	18266989	+	Missense_Mutation	SNP	T	T	C	rs202101890	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	SAA2-514	NM_030754	exon4	c.A304G	p.K102E	CCCATTTATTGGC	.	202	9	217	5	T|0.997;C|0.003	2	0	2	0	0
CELF1	10658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47505954	47505954	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CELF1-92	NM_001172639	exon7	c.T510A	p.D170E	CAGGCCATCAGGT	.	145	36	126	0	.	1	1	0	0	0
OR5D18	219438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55587904	55587904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	OR5D18-71	NM_001001952	exon1	c.A799C	p.N267H	TCCAAAAACTCCA	.	112	30	97	0	.	0	0	0	0	0
YPEL4	219539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57414559	57414559	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	YPEL4-90	NM_145008	exon2	c.C22A	p.P8T	GGCCCGGACCGGG	.	132	36	126	0	.	1	0	1	0	0
TMEM132A	54972	hgsc.bcm.edu	37	11	60701987	60701987	+	Silent	SNP	G	G	A	rs7715	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TMEM132A-227	NM_017870	exon9	c.G1590A	p.S530S	GGCGTCGGATGAG	.	5	5	0	0	G|0.581;A|0.419	107	0	107	0	0
C11orf95	65998	hgsc.bcm.edu	37	11	63531175	63531175	+	Silent	SNP	C	C	G	rs2959886	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_001144936	exon5	c.G1752C	p.R584R	CCGCCACCGCGGC	.	28	14	4	0	C|0.216;G|0.784	0	0	0	0	0
FRMD8	83786	ucsc.edu;bcgsc.ca	37	11	65161744	65161744	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FRMD8-227	NM_031904	exon6	c.G429C	p.E143D	CGAGGAGGTCCTG	.	184	37	157	3	.	6	6	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	6	6	0	0	C|0.233;T|0.767	0	0	0	0	0
FCHSD2	9873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72578934	72578934	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FCHSD2-228	NM_014824	exon13	c.G1284A	p.V428V	ACTGGTCACTGCA	.	70	14	77	0	.	0	0	0	0	0
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92624213	92624213	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FAT3-73	NM_001008781	exon25	c.G13608A	p.V4536V	GAGCGTGGGAGAG	.	69	18	79	0	.	0	0	0	0	0
MTNR1B	4544	hgsc.bcm.edu	37	11	92702962	92702962	+	Missense_Mutation	SNP	G	G	A	rs8192552	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MTNR1B-522	NM_005959	exon1	c.G71A	p.G24E	GGTCGGGGGCTGG	.	26	17	2	0	G|0.942;A|0.058	0	0	0	0	0
MMP12	4321	broad.mit.edu	37	11	102737064	102737064	+	RNA	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MMP12-226	.	.	.	.	AAACTTGATTTCT	.	77	4	89	0	.	0	0	0	0	0
CYP27B1	1594	broad.mit.edu	37	12	58158993	58158993	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CYP27B1-514	NM_000785	exon4	c.C591A	p.G197G	GGCGATGCCTTGT	.	122	6	31	0	.	4	4	0	0	0
ANO4	121601	bcgsc.ca	37	12	101437361	101437361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ANO4-96	NM_178826	exon12	c.G1094A	p.C365Y	CTGTGTGTGATAA	.	117	5	106	0	.	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	16	14	4	2	.	0	0	0	0	0
RB1	5925	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	48953769	48953769	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RB1-3784	NM_000321	exon14	c.G1372T	p.E458X	GTAATGGAATCCA	.	43	25	121	1	.	2	2	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	37	3	35	0	.	3	3	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZNF219-90	NM_001102454	exon3	c.698_703del	p.233_235del	GGGGTGGAGGCTG	.	35	12	1	0	.	0	0	0	0	0
C14orf93	60686	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23456607	23456607	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	C14orf93-91	NM_021944	exon7	c.C1434T	p.D478D	CAGTCTGTCTGAG	.	213	45	223	2	.	20	17	3	0	0
PRKD1	5587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	30066912	30066912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PRKD1-1534	NM_002742	exon16	c.G2219A	p.R740Q	GACCTCCGGAAAG	.	58	19	47	0	.	6	4	2	0	0
RALGAPA1	253959	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	36155747	36155747	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RALGAPA1-138	NM_194301	exon19	c.2559+1G>-	.	AACTTACCGAGGC	.	129	23	96	0	.	0	0	0	0	0
SFTA3	253970	broad.mit.edu	37	14	36946275	36946275	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_001101341	exon3	c.C162A	p.P54P	ACAGGTGGGTATC	.	240	6	256	0	.	0	0	0	0	0
PYGL	5836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	51383442	51383442	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PYGL-91	NM_002863	exon9	c.A1010G	p.Q337R	TTCAGCTGGATGG	.	258	49	232	0	.	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	7	6	0	0	T|0.603;C|0.397	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	24921531	24921531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_018958	exon1	c.G517A	p.D173N	GGGGAGGATGACG	.	71	11	58	0	.	0	0	0	0	0
TRPM1	4308	bcgsc.ca	37	15	31295151	31295151	+	Missense_Mutation	SNP	T	T	G	rs17227996	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TRPM1-94	NM_001252020	exon27	c.A3803C	p.N1268T	AGAGCATTCACCA	.	89	4	79	0	T|0.968;G|0.032	0	0	0	0	0
MEX3B	84206	hgsc.bcm.edu	37	15	82335880	82335880	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MEX3B-226	NM_032246	exon2	c.C1331G	p.P444R	TGCAAGGGTGGAG	.	71	10	3	0	.	0	0	0	0	0
PKD1	5310	broad.mit.edu	37	16	2154573	2154573	+	Missense_Mutation	SNP	A	A	C	rs201238819		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PKD1-91	NM_000296	exon22	c.T8087G	p.L2696R	AGGATGAGCATCA	.	99	5	88	1	.	5	0	5	0	0
ECI1	1632	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2293441	2293441	+	Splice_Site	SNP	C	C	T	rs141975235		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ECI1-90	NM_001178029	exon6	c.442-1G>A	.	GGCTCCCTGCAGG	.	45	11	66	0	C|1.000;T|0.000	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3293492	3293492	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MEFV-228	NM_000243	exon10	c.G1995C	p.W665C	CAGGATCCATGCT	.	59	13	76	0	.	0	0	0	0	0
TFAP4	7023	broad.mit.edu	37	16	4310202	4310202	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TFAP4-91	NM_003223	exon6	c.G711T	p.V237V	TGCTGGCACGATC	.	12	4	19	0	.	3	3	0	0	0
COQ7	10229	hgsc.bcm.edu	37	16	19079037	19079037	+	Silent	SNP	G	G	A	rs17357834	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	COQ7-91	NM_016138	exon1	c.G51A	p.P17P	GCGCCCGGGGGCC	.	17	13	3	0	G|0.827;A|0.173	9	1	8	0	0
SH2B1	25970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28878100	28878100	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	SH2B1-92	NM_001145796	exon2	c.G685C	p.E229Q	CGTTTTGAGAGGC	.	58	10	116	0	.	12	10	2	0	0
GFOD2	81577	broad.mit.edu;bcgsc.ca	37	16	67709785	67709785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GFOD2-93	NM_030819	exon3	c.C431A	p.A144E	ATCACCGCTCCCA	.	170	6	161	0	.	10	10	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	22	0	1	0	.	0	0	0	0	0
TRPV3	162514	broad.mit.edu	37	17	3432169	3432169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TRPV3-94	NM_001258205	exon10	c.C1363A	p.L455M	GGGTCAGGGTGAT	.	61	3	111	1	.	0	0	0	0	0
NLGN2	57555	bcgsc.ca	37	17	7318935	7318935	+	Silent	SNP	C	C	T	rs12947017	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	NLGN2-90	NM_020795	exon6	c.C1143T	p.G381G	CATCGGCGTCAAC	.	149	8	301	2	C|0.720;T|0.280	0	0	0	0	0
CHD3	1107	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7794051	7794051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CHD3-228	NM_001005271	exon3	c.G553A	p.G185R	GATGGGGGGCAAA	.	36	17	56	1	.	0	0	0	0	0
KIAA0100	9703	bcgsc.ca	37	17	26955337	26955337	+	Missense_Mutation	SNP	G	G	A	rs61743603	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	KIAA0100-93	NM_014680	exon24	c.C4540T	p.P1514S	CACGAGGTGGGGC	.	119	5	231	0	G|0.995;A|0.005	5	5	0	0	0
TOP2A	7153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38555090	38555090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TOP2A-655	NM_001067	exon26	c.G3388C	p.D1130H	GCATATCAAGAAG	.	104	26	123	0	.	6	1	5	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40651060	40651060	+	Missense_Mutation	SNP	T	T	C	rs149805487	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ATP6V0A1-91	NM_001130020	exon15	c.T1700C	p.I567T	ACCATATGTGAGT	.	180	6	184	0	T|0.998;C|0.002	0	0	0	0	0
COL1A1	1277	broad.mit.edu;bcgsc.ca	37	17	48277173	48277173	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	COL1A1-986	NM_000088	exon2	c.A239G	p.N80S	GGGCAGTTCTTGG	.	65	12	90	1	.	4	4	0	0	0
MED13	9969	broad.mit.edu	37	17	60107244	60107244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MED13-136	NM_005121	exon7	c.G1140T	p.W380C	TTCTTGCCAAACT	.	109	4	87	0	.	0	0	0	0	0
FTSJ3	117246	bcgsc.ca	37	17	61901197	61901197	+	Missense_Mutation	SNP	T	T	A	rs2727288	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FTSJ3-91	NM_017647	exon13	c.A1270T	p.S424C	TGGTGCTCAAGGA	.	78	4	106	0	T|0.406;A|0.594	22	22	0	0	0
TEX2	55852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	62254810	62254810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TEX2-91	NM_018469	exon6	c.G2467C	p.E823Q	CCTCCTCAGAGGG	.	50	12	42	0	.	12	9	3	0	0
RECQL5	9400	broad.mit.edu	37	17	73627242	73627242	+	Missense_Mutation	SNP	C	C	T	rs201834853		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RECQL5-538	NM_004259	exon10	c.G1536A	p.M512I	CAGCTGCATCTGC	.	70	3	123	0	C|0.999;T|0.001	0	0	0	0	0
CBX8	57332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	77769859	77769861	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	GAG	GAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CBX8-226	NM_020649	exon4	c.241_243del	p.81_81del	TACTTTGAGGAGG	.	118	21	175	0	.	0	0	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	18	9	0	0	C|0.850;T|0.150	1	0	1	0	0
FASN	2194	hgsc.bcm.edu	37	17	80043739	80043739	+	Silent	SNP	A	A	G	rs2229422	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FASN-90	NM_004104	exon23	c.T3741C	p.A1247A	GTGGCCAGCCAGC	.	6	5	2	0	T|0.697;G|0.014;C|0.242;A|0.047	0	0	0	0	0
CABLES1	91768	hgsc.bcm.edu	37	18	20716258	20716258	+	Missense_Mutation	SNP	G	G	A	rs200098768		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CABLES1-522	NM_001100619	exon1	c.G532A	p.E178K	TCGGGGGAGCAGT	.	6	5	0	0	.	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CBLN2-90	NM_182511	exon3	c.G75T	p.P25P	GCCGCCCGGCTCG	.	11	11	0	0	C|0.390;A|0.610	0	0	0	0	0
CACTIN	58509	hgsc.bcm.edu	37	19	3613346	3613346	+	Missense_Mutation	SNP	G	G	A	rs2074789	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_021231	exon9	c.C1496T	p.A499V	GGCGCCGCGTCCT	.	5	5	0	0	G|0.535;A|0.465	0	0	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	20	9	0	0	C|0.752;G|0.248	4	2	2	0	0
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8130961	8130961	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FBN3-100	NM_032447	exon63	c.G8272A	p.V2758I	AGCTGACGCCACG	.	122	21	62	0	.	0	0	0	0	0
CD320	51293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8370031	8370031	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CD320-90	NM_016579	exon2	c.C152G	p.S51X	GAGCCTGAGCTGG	.	51	15	59	0	.	9	7	2	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8400651	8400651	+	Silent	SNP	C	C	G	rs11669559	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	KANK3-90	NM_198471	exon3	c.G60C	p.P20P	GGGGACCGGGCAC	.	13	13	0	0	C|0.880;G|0.120	1	0	1	0	0
CDC37	11140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10506791	10506791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CDC37-522	NM_007065	exon2	c.G191T	p.C64F	CTCTGGCACTCGG	.	237	42	169	0	.	216	187	29	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	23	11	0	0	C|0.617;T|0.383	12	5	7	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	6	6	0	0	T|0.072;C|0.928	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	6	6	0	0	A|0.065;C|0.935	0	0	0	0	0
LRP3	4037	broad.mit.edu	37	19	33697148	33697148	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	LRP3-92	NM_002333	exon5	c.C1472A	p.A491D	GCCTGGCCGCCGT	.	121	5	34	1	.	29	25	3	0	1
LRP3	4037	hgsc.bcm.edu	37	19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	rs11539586		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	LRP3-92	NM_002333	exon7	c.C1850T	p.A617V	CGCGGGCGCCCCG	.	20	16	0	0	T|0.000;G|0.967	11	5	6	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36212357	36212357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MLL4-697	NM_014727	exon3	c.G2108C	p.S703T	ACCTCAGCCTGCC	.	125	18	129	0	.	0	0	0	0	0
PRODH2	58510	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36303397	36303397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PRODH2-92	NM_021232	exon3	c.C464T	p.S155F	TAGACGGATGCTC	.	215	32	190	2	.	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	15	10	0	0	G|0.349;A|0.651	0	0	0	0	0
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44419275	44419275	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZNF45-91	NM_003425	exon10	c.T313G	p.S105A	TCTGGGAGCAGAA	.	36	8	40	0	.	4	2	2	0	0
TPRX1	284355	ucsc.edu	37	19	48305650	48305650	+	Silent	SNP	C	C	T	rs112397458	bycluster;byfrequency;by1000genomes	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TPRX1-90	NM_198479	exon2	c.G618A	p.P206P	TGGGATCGGGCCT	.	31	10	34	0	C|0.912;T|0.088	0	0	0	0	0
ZNF701	55762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53085521	53085521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZNF701-90	NM_001172655	exon5	c.A407T	p.H136L	TGGTCCACACAGG	.	253	47	246	0	.	1	1	0	0	0
LILRA4	23547	ucsc.edu	37	19	54848121	54848121	+	Missense_Mutation	SNP	C	C	T	rs141881690	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	LILRA4-91	NM_012276	exon6	c.G1246A	p.V416M	AGACCACGAGCTC	.	127	14	110	3	C|0.984;T|0.016	0	0	0	0	0
GP6	51206	hgsc.bcm.edu	37	19	55525497	55525497	+	Missense_Mutation	SNP	A	A	G	rs1671150	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GP6-92	NM_001083899	exon8	c.T1816C	p.F606L	AGACAAAGTCAGG	.	4	4	0	0	A|0.233;G|0.767	0	0	0	0	0
FAM110C	642273	hgsc.bcm.edu	37	2	45895	45895	+	Missense_Mutation	SNP	A	A	G	rs4241318		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FAM110C-68	NM_001077710	exon1	c.T491C	p.I164T	TCGGGGATTGCGG	.	6	6	0	0	A|0.011;G|0.989	0	0	0	0	0
PXDN	7837	hgsc.bcm.edu	37	2	1748117	1748117	+	Silent	SNP	C	C	G	rs140134102	by1000genomes	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PXDN-166	NM_012293	exon1	c.G111C	p.P37P	GCGGCTCGGACAC	.	9	5	0	0	C|0.967;G|0.033	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_016030	exon2	c.C432T	p.A144A	CGAAGCCGCGCGC	.	7	5	0	0	C|0.719;T|0.281	0	0	0	0	0
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39187519	39187519	+	Silent	SNP	A	A	G	rs958412		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ARHGEF33-46	NM_001145451	exon14	c.A2073G	p.K691K	CTACAAACTGGAG	.	7	7	0	0	A|0.086;G|0.914	0	0	0	0	0
PSD4	23550	hgsc.bcm.edu	37	2	113950832	113950871	+	Frame_Shift_Del	DEL	CAGGAGCTTCCTCCAGGCCTTGGTGCTCAGTGGGGAGACT	CAGGAGCTTCCTCCAGGCCTTGGTGCTCAGTGGGGAGACT	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	CAGGAGCTTCCTCCAGGCCTTGGTGCTCAGTGGGGAGACT	CAGGAGCTTCCTCCAGGCCTTGGTGCTCAGTGGGGAGACT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PSD4-229	NM_012455	exon8	c.1920_1956del	p.640_652del	CCTTTGCAGGAGC	.	69	0	77	0	.	0	0	0	0	0
ZRANB3	84083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	135988259	135988259	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZRANB3-658	NM_032143	exon13	c.C1778G	p.T593R	GATGGTGTCTCTT	.	287	55	232	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179446654	179446654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TTN-636	NM_001267550	exon315	c.G66442T	p.A22148S	CATAAGCGGCCTT	.	93	27	83	0	.	0	0	0	0	0
ANKAR	150709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190595328	190595328	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ANKAR-72	NM_144708	exon16	c.3300+1G>T	.	ATTAAGGTATAAA	.	69	13	49	0	.	0	0	0	0	0
ABCA12	26154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	215847044	215847044	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ABCA12-99	NM_173076	exon30	c.C4446A	p.G1482G	CTTCATGCCTCCT	.	141	21	133	0	.	0	0	0	0	0
XKR7	343702	broad.mit.edu	37	20	30556350	30556350	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	XKR7-137	NM_001011718	exon1	c.A372C	p.G124G	CCCGGGACCCGCC	.	69	7	48	10	.	0	0	0	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	18	8	3	0	C|0.615;A|0.385	0	0	0	0	0
SEMG1	6406	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	43836470	43836470	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	SEMG1-92	NM_003007	exon2	c.G532A	p.V178I	ACTTCCGTCTCTG	.	269	91	228	1	.	0	0	0	0	0
TMEM189	387521	hgsc.bcm.edu	37	20	48770159	48770159	+	Missense_Mutation	SNP	T	T	C	rs232733		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TMEM189-22	NM_199129	exon1	c.A16G	p.N6D	GCCAGTTCTCGGC	.	4	4	0	0	C|0.999;T|0.001	1	0	1	0	0
COL18A1	80781	broad.mit.edu	37	21	46911183	46911183	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	COL18A1-90	NM_030582	exon21	c.2652delC	p.G884fs	CCCTGGCCCCCCC	.	297	7	178	0	.	0	0	0	0	0
LZTR1	8216	broad.mit.edu	37	22	21350330	21350330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	LZTR1-280	NM_006767	exon18	c.C2148A	p.S716R	GCCCAGCAGGCAG	.	53	4	83	2	.	0	0	0	0	0
TPST2	8459	broad.mit.edu	37	22	26937357	26937357	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TPST2-90	NM_001008566	exon3	c.C240A	p.G80G	CGTGGTGCCACTG	.	95	8	49	2	.	9	8	1	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	17	6	1	0	A|0.354;G|0.646	0	0	0	0	0
RRP7A	27341	bcgsc.ca	37	22	42912106	42912106	+	Missense_Mutation	SNP	C	C	T	rs1812240	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RRP7A-91	NM_015703	exon3	c.G253A	p.V85I	ACTGGACGAGGCC	.	63	4	146	0	C|0.860;N|0.001	57	57	0	0	0
ARSA	410	bcgsc.ca	37	22	51064039	51064039	+	Missense_Mutation	SNP	G	G	C	rs743616	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ARSA-92	NM_001085426	exon8	c.C1178G	p.T393S	TTTCCAGTCCGCA	.	66	5	134	0	G|0.545;C|0.455	36	36	0	0	0
GOLGA4	2803	bcgsc.ca	37	3	37368758	37368758	+	Missense_Mutation	SNP	T	T	C	rs78214260	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GOLGA4-93	NM_001172713	exon15	c.T5447C	p.I1816T	GTATGATAGGTCA	.	115	5	97	0	T|0.962;C|0.038	0	0	0	0	0
ZNF589	51385	bcgsc.ca	37	3	48309828	48309828	+	Missense_Mutation	SNP	C	C	G	rs11718329	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZNF589-91	NM_016089	exon4	c.C647G	p.T216R	CAGTCACGTTTGG	.	98	5	132	0	C|0.735;G|0.265	1	1	0	0	0
RBM15B	29890	hgsc.bcm.edu	37	3	51429553	51429553	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RBM15B-90	NM_013286	exon1	c.A723G	p.P241P	TCCCCCAGGGCCG	.	12	5	0	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	7	7	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	8	8	0	0	G|0.252;C|0.748	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	11	11	0	0	T|0.412;A|0.588	0	0	0	0	0
GP9	2815	broad.mit.edu	37	3	128780901	128780901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GP9-90	NM_000174	exon3	c.G319T	p.A107S	CCCGAGGCCCTGC	.	107	10	35	1	.	0	0	0	0	0
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134967302	134967302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	EPHB1-1492	NM_004441	exon14	c.A2641G	p.M881V	GATAAGATGATCC	.	208	48	238	0	.	0	0	0	0	0
GMPS	8833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	155611467	155611467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GMPS-229	NM_003875	exon2	c.C188T	p.A63V	CATTTGCTATAAA	.	79	24	85	0	.	3	1	2	0	0
TNIK	23043	bcgsc.ca	37	3	170811726	170811726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TNIK-550	NM_015028	exon23	c.T2623C	p.Y875H	CATTGTACTGCTC	.	93	4	128	0	.	0	0	0	0	0
MUC20	200958	bcgsc.ca	37	3	195452805	195452805	+	Missense_Mutation	SNP	T	T	C	rs138659995	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_152673	exon3	c.T818C	p.L273P	CAGATCTCATCCC	.	465	14	556	5	T|0.856;C|0.144	1	1	0	0	0
DOK7	285489	hgsc.bcm.edu	37	4	3495095	3495095	+	Missense_Mutation	SNP	G	G	A	rs9684786	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	DOK7-91	NM_173660	exon7	c.G1382A	p.G461D	CCCAGGGCAGCGA	.	41	30	2	0	G|0.834;A|0.166	0	0	0	0	0
ADRA2C	152	broad.mit.edu	37	4	3769013	3769013	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ADRA2C-522	NM_000683	exon1	c.G680T	p.G227V	TCATGGGCCTGGT	.	99	6	62	1	.	28	27	0	0	1
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	FAM184B-23	NM_015688	exon13	c.C2350T	p.R784W	CGCCCCGCTCCTG	.	9	9	0	0	G|0.440;A|0.560	0	0	0	0	0
DTHD1	401124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36296567	36296567	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	DTHD1-46	NM_001170700	exon4	c.C1174G	p.P392A	TGTTCTCCATACC	.	125	36	117	0	.	0	0	0	0	0
BANK1	55024	broad.mit.edu	37	4	102751014	102751014	+	Missense_Mutation	SNP	G	G	C	rs35978636	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	BANK1-93	NM_017935	exon2	c.G120C	p.W40C	GGAATGGGCTCTG	.	65	5	73	2	G|0.989;C|0.011	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	NSUN2-91	NM_017755	exon1	c.G51A	p.E17E	CGCGTCCTCCGGC	.	8	8	0	0	C|0.687;T|0.313	1	0	1	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	4	4	0	0	C|0.454;G|0.546	0	0	0	0	0
CTNND2	1501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	10992734	10992734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CTNND2-293	NM_001332	exon19	c.G3140A	p.R1047Q	CTTTGCCGGTCCC	.	92	21	85	1	.	0	0	0	0	0
IPO11	51194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	61779887	61779887	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	IPO11-227	NM_001134779	exon11	c.A1192C	p.T398P	TTCTTCACATATC	.	266	60	224	0	.	0	0	0	0	0
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215891	140215891	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PCDHA7-94	NM_031852	exon1	c.C1923T	p.D641D	GACGGACGCACCG	.	224	46	186	0	.	9	5	4	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PCDHB7-95	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG	.	290	15	143	0	.	14	11	3	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	19	19	0	0	A|0.006;G|0.994	12	0	12	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	19	11	2	0	G|0.546;T|0.454	0	0	0	0	0
DAXX	1616	hgsc.bcm.edu;bcgsc.ca	37	6	33288834	33288835	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	DAXX-731	NM_001141970	exon3	c.753_754del	p.251_252del	GCTCACATAGTCG	.	82	24	91	1	.	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	14	14	0	0	T|0.441;C|0.559	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	18	8	0	0	C|0.673;A|0.327	4	1	3	0	0
PAQR8	85315	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	52268605	52268605	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PAQR8-68	NM_133367	exon2	c.A594C	p.K198N	TGCCAAATATCGT	.	170	37	161	1	.	0	0	0	0	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	66053948	66053948	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	EYS-660	NM_001142801	exon10	c.C1582T	p.H528Y	CTTCATGTGGGAA	.	119	25	95	0	.	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	POU3F2-90	NM_005604	exon1	c.T627G	p.G209G	GGCCGGTCTGCAC	.	13	12	0	0	T|0.089;G|0.911	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871038	170871040	+	In_Frame_Del	DEL	CAA	CAA	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	TBP-91	NM_003194	exon3	c.214_216del	p.72_72del	CAGCAGCAACAGC	.	73	9	64	0	.	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	16	11	0	0	G|0.456;C|0.544	1	0	1	0	0
JAZF1	221895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27880467	27880467	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	JAZF1-808	NM_175061	exon4	c.G405A	p.E135E	CACCTCCTCCTCG	.	110	24	111	0	.	15	13	2	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	12	7	0	0	C|0.329;G|0.671	4	3	1	0	0
NPTX2	4885	broad.mit.edu;bcgsc.ca	37	7	98254231	98254249	+	Frame_Shift_Del	DEL	CAGGCAATAGCGCCTTTAA	CAGGCAATAGCGCCTTTAA	-	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	NPTX2-515	NM_002523	exon3	c.644_659del	p.215_220del	AACCCCCAGGCAA	.	37	7	100	0	.	0	0	0	0	0
UFSP1	402682	bcgsc.ca	37	7	100486576	100486576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	UFSP1-22	NM_001015072	exon1	c.C317A	p.A106D	CCAGCAGCCTGTA	.	53	10	126	3	.	6	6	0	0	0
VIPR2	7434	bcgsc.ca	37	7	158827326	158827326	+	Silent	SNP	G	G	A	rs2071624	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	VIPR2-91	NM_003382	exon9	c.C825T	p.N275N	GTGGTCGTTTGTA	.	146	7	211	0	G|0.742;N|0.000	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	16	4	1	0	A|0.118;G|0.882	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	12	12	0	0	C|0.740;T|0.260	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	21	21	0	0	A|0.738;G|0.262	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	8	8	0	0	G|0.992;C|0.006	1	0	1	0	0
JAK2	3717	bcgsc.ca	37	9	5081780	5081780	+	Silent	SNP	G	G	A	rs2230724	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	JAK2-75307	NM_004972	exon19	c.G2490A	p.L830L	TGCCCTGGGGTTT	.	98	6	85	0	G|0.386;A|0.614	1	1	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832719	5832719	+	Missense_Mutation	SNP	G	G	C	rs13302671	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	ERMP1-69	NM_024896	exon1	c.C309G	p.H103Q	CCCGCGGTGTCCA	.	26	6	0	0	G|0.981;C|0.019	0	0	0	0	0
CER1	9350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	14720202	14720202	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CER1-226	NM_005454	exon2	c.C690A	p.I230I	CACCTTGATCACG	.	152	34	185	1	.	0	0	0	0	0
MAN1B1	11253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	139990835	139990835	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	MAN1B1-91	NM_016219	exon4	c.A612G	p.T204T	GAGGACAGTCATC	.	123	31	93	0	.	0	0	0	0	0
BEND2	139105	ucsc.edu;bcgsc.ca	37	X	18230715	18230715	+	Missense_Mutation	SNP	A	A	C	rs17274127	byfrequency	TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	BEND2-133	NM_001184767	exon4	c.T462G	p.F154L	TTTTGGAAAATCC	.	37	4	38	0	A|0.766;0|0.015	0	0	0	0	0
IL1RAPL2	26280	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	104440271	104440271	+	Missense_Mutation	SNP	C	C	T	rs146735893		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	IL1RAPL2-194	NM_017416	exon3	c.C197T	p.T66M	ATAGCACGGCCCA	.	118	49	173	0	C|1.000;T|0.000	0	0	0	0	0
GPR50	9248	broad.mit.edu	37	X	150348927	150348927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GPR50-176	NM_004224	exon2	c.C872G	p.A291G	TCAACGCTGTGAT	.	51	3	70	0	.	0	0	0	0	0
CCDC19	25790	hgsc.bcm.edu	37	1	159858283	159858284	+	Frame_Shift_Ins	INS	-	-	ACACTGACACAAGAATAAACAGAGTTAGGGAGGGGAGAGGGAAAGCTCTCAGCACC	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	CCDC19-91	NM_012337	exon4	c.276_277insGGTGCTGAGAGCTTTCCCTCTCCCCTCCCTAACTCTGTTTATTCTTGTGTCAGTGT	p.V92fs	TGTGGGAACACTG	.	82	0	69	0	.	0	0	0	0	0
PPHLN1	51535	hgsc.bcm.edu	37	12	42839868	42839869	+	In_Frame_Ins	INS	-	-	CCCCGCAGC	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	PPHLN1-154	NM_016488	exon12	c.1126_1127insCCCCGCAGC	p.A376delinsAPQP	CTGCAGGCCCCGC	.	54	10	32	0	.	0	0	0	0	0
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	104147000	104147001	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	STAB2-104	NM_017564	exon61	c.6583_6584insC	p.T2195fs	CCAGATACCACTG	.	113	18	111	0	.	0	0	0	0	0
AVL9	23080	broad.mit.edu	37	7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	AVL9-90	NM_015060	exon1	c.21_22insG	p.G7fs	GAGAGGCGGGGAT	.	125	2	66	0	.	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	AGCGTCATCTTGT	.	293	0	323	0	.	0	0	0	0	0
GNAS	2778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57485075	57485076	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-OR-A5JE-01A-11D-A29I-10	TCGA-OR-A5JE-10A-01D-A29L-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	47acecb9-da85-4bde-8564-77cb7023e9db	37df5530-439e-480c-ae45-fdb5ec948e68	.	GNAS-4767	NM_080425	exon11	c.G2839T	p.G947W	CTTGCTGGGAAAT	.	132	0	97	0	.	0	0	0	0	0