Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305303	6305303	+	Silent	SNP	C	C	A	rs61760837		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	HES3-514	NM_001024598	exon4	c.C297A	p.A99A	GAGCGCCGCCGGC	.	4	4	0	0	C|0.438;A|0.562	0	0	0	0	0
KIF1B	23095	broad.mit.edu	37	1	10351187	10351187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KIF1B-93	NM_183416	exon14	c.G1344T	p.K448N	AGAGAAGCTTCGT	.	54	4	41	0	.	0	0	0	0	0
TMCO4	255104	bcgsc.ca	37	1	20009737	20009737	+	Silent	SNP	G	G	A	rs10917514	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TMCO4-68	NM_181719	exon16	c.C1701T	p.S567S	GTCTCCGGATATG	.	289	15	313	4	G|0.888;A|0.112	0	0	0	0	0
KCNQ4	9132	bcgsc.ca	37	1	41296828	41296828	+	Missense_Mutation	SNP	T	T	G	rs34287852	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KCNQ4-90	NM_004700	exon10	c.T1365G	p.H455Q	GCAGCATCTGGCA	.	312	10	334	5	T|0.858;G|0.142	0	0	0	0	0
C1orf173	127254	bcgsc.ca	37	1	75037845	75037845	+	Silent	SNP	A	A	G	rs12723334	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	C1orf173-94	NM_001002912	exon14	c.T3549C	p.S1183S	GGCTTCACTCAGT	.	78	4	93	0	A|0.649;G|0.351	0	0	0	0	0
OVGP1	5016	bcgsc.ca	37	1	111957533	111957533	+	Silent	SNP	C	C	T	rs112145355		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	OVGP1-135	NM_002557	exon11	c.G1590A	p.Q530Q	CACAGACTGATGA	.	75	24	74	0	C|0.500;T|0.500	0	0	0	0	0
CHRNB2	1141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154542804	154542804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CHRNB2-90	NM_000748	exon4	c.C326A	p.S109Y	TCCCTTCCAAACA	.	114	12	120	0	.	0	0	0	0	0
KCNN3	3782	broad.mit.edu;bcgsc.ca	37	1	154842331	154842333	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KCNN3-91	NM_001204087	exon1	c.108_110del	p.36_37del	TGCTGTTGCTGCT	.	100	12	78	0	.	0	0	0	0	0
OR6K3	391114	bcgsc.ca	37	1	158687896	158687896	+	Missense_Mutation	SNP	C	C	T	rs857705	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	OR6K3-70	NM_001005327	exon1	c.G10A	p.G4R	GGTTTCCGCTCTC	.	56	5	50	0	C|0.776;T|0.224	0	0	0	0	0
SORBS1	10580	ucsc.edu;bcgsc.ca	37	10	97096405	97096405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SORBS1-155	NM_001034954	exon28	c.C3512A	p.T1171N	TCAGGGGTGTTGA	.	44	5	47	1	.	0	0	0	0	0
CNNM1	26507	bcgsc.ca	37	10	101147692	101147692	+	Missense_Mutation	SNP	G	G	A	rs2298316	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CNNM1-68	NM_020348	exon8	c.G2456A	p.R819Q	CAACCCGGGGCAC	.	247	8	247	1	G|0.935;A|0.065	0	0	0	0	0
IGSF22	283284	broad.mit.edu;bcgsc.ca	37	11	18736089	18736089	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	IGSF22-140	NM_173588	exon12	c.T1614C	p.N538N	CTCGTCATTCAGC	.	169	11	156	1	.	0	0	0	0	0
OR5D13	390142	broad.mit.edu	37	11	55541042	55541042	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	OR5D13-71	NM_001001967	exon1	c.G129A	p.G43G	AGTGGGGAACTTG	.	105	4	145	0	.	0	0	0	0	0
RAB3IL1	5866	broad.mit.edu	37	11	61672084	61672084	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	RAB3IL1-228	NM_013401	exon7	c.T833C	p.I278T	GGCTCAATGGTGA	.	208	6	202	0	.	0	0	0	0	0
GPR137	56834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64054094	64054094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GPR137-68	NM_001170726	exon3	c.T272A	p.L91Q	CCACCCTGTATGC	.	108	38	127	0	.	0	0	0	0	0
EFEMP2	30008	broad.mit.edu;bcgsc.ca	37	11	65638718	65638718	+	Missense_Mutation	SNP	C	C	T	rs2234462	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	EFEMP2-91	NM_016938	exon4	c.G277A	p.G93S	CCTCGCCGTGTAG	.	176	8	221	2	C|0.998;T|0.002	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	10	4	0	0	C|0.921;T|0.079	0	0	0	0	0
SPTBN2	6712	broad.mit.edu	37	11	66472762	66472762	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SPTBN2-155	NM_006946	exon14	c.A1985C	p.H662P	AGGAGGTGCTGCT	.	71	15	31	4	.	0	0	0	0	0
UNC93B1	81622	broad.mit.edu	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	.	.	.	.	CAGGGCACTGCCC	.	109	4	89	1	.	0	0	0	0	0
BUD13	84811	bcgsc.ca	37	11	116633825	116633825	+	Silent	SNP	C	C	T	rs918144	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	BUD13-154	NM_001159736	exon4	c.G480A	p.P160P	AGGATCCGGGGTG	.	119	5	96	0	C|0.470;T|0.530	0	0	0	0	0
ATN1	1822	ucsc.edu	37	12	7045912	7045912	+	Silent	SNP	G	G	A	rs144280633	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ATN1-139	NM_001007026	exon5	c.G1482A	p.Q494Q	GCAGCAGCAGCAG	.	157	24	156	2	G|0.972;A|0.028	0	0	0	0	0
KRT81	3887	broad.mit.edu	37	12	52680108	52680108	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KRT81-90	NM_002281	exon9	c.C1449A	p.C483X	CACGCCGCAGGAA	.	247	6	176	0	.	0	0	0	0	0
C14orf39	317761	ucsc.edu	37	14	60932752	60932752	+	Missense_Mutation	SNP	G	G	A	rs12586711	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	C14orf39-94	NM_174978	exon11	c.C917T	p.A306V	TGCTTCGCAGAAC	.	12	7	11	0	G|0.800;A|0.200	0	0	0	0	0
SPTB	6710	bcgsc.ca	37	14	65242044	65242044	+	Silent	SNP	C	C	T	rs184528	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SPTB-100	NM_000347	exon22	c.G4641A	p.A1547A	CTCCGCCGCCTCC	.	121	6	128	1	C|0.642;T|0.358	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	8	8	0	0	G|0.327;T|0.673	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	12	10	4	0	T|0.603;C|0.397	0	0	0	0	0
TYRO3	7301	bcgsc.ca	37	15	41862356	41862356	+	Splice_Site	SNP	T	T	C	rs149022093	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TYRO3-1388	NM_006293	exon10	c.1382+2T>C	.	TTTGGGTAAGGGG	.	106	8	151	2	T|0.999;C|0.001	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	10	6	1	0	G|0.570;T|0.430	0	0	0	0	0
NAGPA	51172	broad.mit.edu	37	16	5083340	5083340	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	NAGPA-90	NM_016256	exon2	c.T476G	p.V159G	CTGCTCACCCGCC	.	37	11	30	6	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	21	0	2	0	.	0	0	0	0	0
TBC1D29	26083	bcgsc.ca	37	17	28887667	28887667	+	Silent	SNP	T	T	C	rs78888987	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TBC1D29-22	NM_015594	exon3	c.T111C	p.D37D	GTGGGATATGTAT	.	171	17	108	2	T|0.934;C|0.066	0	0	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001130677	exon1	c.C187G	p.L63V	CCGCCAGCTCCCC	.	9	5	0	0	G|0.824;C|0.176	0	0	0	0	0
KRTAP4-11	653240	bcgsc.ca	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_033059	exon1	c.C481G	p.L161V	GACGCAGGCAGCA	.	198	28	144	4	G|0.500;C|0.500	0	0	0	0	0
BPTF	2186	bcgsc.ca	37	17	65955758	65955758	+	Silent	SNP	T	T	C	rs202116659		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	BPTF-94	NM_182641	exon24	c.T8028C	p.A2676A	ACCAGCTCCTCCA	.	86	9	84	1	.	0	0	0	0	0
SEPT9	10801	broad.mit.edu	37	17	75483522	75483522	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SEPT9-659	NM_001113491	exon5	c.T930G	p.G310G	CTTGGGTAAATCC	.	216	26	184	10	.	0	0	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	9	7	0	0	C|0.850;T|0.150	0	0	0	0	0
PTPN2	5771	broad.mit.edu	37	18	12794285	12794285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	PTPN2-652	NM_002828	exon9	c.G1240T	p.A414S	ATAGGGCATTTTG	.	83	8	69	1	.	0	0	0	0	0
DOT1L	84444	hgsc.bcm.edu	37	19	2226847	2226847	+	Missense_Mutation	SNP	G	G	T	rs113842228	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	DOT1L-132	NM_032482	exon27	c.G4327T	p.G1443C	GGCCCCGGCCTGG	.	7	5	1	0	G|0.970;T|0.030	0	0	0	0	0
OR10H5	284433	bcgsc.ca	37	19	15905661	15905661	+	Missense_Mutation	SNP	C	C	A	rs67455341	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	OR10H5-69	NM_001004466	exon1	c.C803A	p.S268Y	CCCAGTCTCCGGA	.	350	12	280	1	C|0.733;A|0.267	0	0	0	0	0
ZNF626	199777	hgsc.bcm.edu;bcgsc.ca	37	19	20807300	20807300	+	Silent	SNP	A	A	G	rs4808252		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZNF626-515	NM_001076675	exon4	c.T1383C	p.A461A	CTTAAAAGCTTTG	.	29	4	34	0	A|0.500;G|0.500	0	0	0	0	0
ZNF568	374900	broad.mit.edu	37	19	37441073	37441073	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZNF568-136	NM_198539	exon7	c.G1018T	p.G340W	GAATGTGGGAAAT	.	96	4	47	0	.	0	0	0	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001145402	exon9	c.A2337C	p.P779P	GCCCCATGGCTGC	.	78	9	73	0	.	0	0	0	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869902	55869902	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001145402	exon9	c.G2334A	p.Q778Q	CCATGGCTGCTCC	.	71	11	70	0	.	0	0	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	176	64	110	1	.	0	0	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	151	41	103	1	.	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	9	8	0	0	G|0.301;C|0.699	0	0	0	0	0
USP34	9736	broad.mit.edu	37	2	61417514	61417514	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	USP34-579	NM_014709	exon78	c.C9765A	p.A3255A	CAAATTGGCACAG	.	68	3	56	0	.	0	0	0	0	0
SESTD1	91404	bcgsc.ca	37	2	179986553	179986553	+	Silent	SNP	T	T	C	rs56336305	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SESTD1-228	NM_178123	exon13	c.A1386G	p.K462K	ATTTTCTTTATTT	.	52	4	78	0	T|0.982;C|0.018	0	0	0	0	0
ISX	91464	broad.mit.edu;bcgsc.ca	37	22	35480438	35480438	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ISX-95	NM_001008494	exon3	c.T444G	p.A148A	GGGGGCTCCACAG	.	107	8	78	1	.	0	0	0	0	0
MIRLET7BHG	400931	broad.mit.edu	37	22	46501355	46501355	+	RNA	SNP	G	G	T	rs8139990	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	.	.	.	.	GTGTTCGCCACGT	.	131	6	150	0	G|0.630;T|0.370	0	0	0	0	0
SMARCC1	6599	bcgsc.ca	37	3	47712202	47712202	+	Silent	SNP	T	T	C	rs1141601	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SMARCC1-228	NM_003074	exon19	c.A1845G	p.K615K	AGCACCTTTACTC	.	248	7	244	0	T|0.472;G|0.091	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	8	8	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	12	12	0	0	G|0.252;C|0.748	0	0	0	0	0
ZPLD1	131368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	102171984	102171984	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZPLD1-72	NM_175056	exon3	c.375+1G>T	.	CTGGTGGTAAGAT	.	76	8	72	0	.	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959626	183959626	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_138345	exon19	c.G3529T	p.E1177X	TGGCTGGAGCACC	.	73	4	36	0	.	0	0	0	0	0
DOK7	285489	broad.mit.edu	37	4	3494664	3494664	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	DOK7-91	NM_173660	exon7	c.A951C	p.P317P	AAGGCCACCCCCC	.	113	31	20	2	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	rs74929644		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZAR1-90	NM_175619	exon1	c.A461T	p.Q154L	CCCAGCAGCCATC	.	8	8	0	0	A|0.552;T|0.448	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	4	4	0	0	G|0.585;C|0.415	0	0	0	0	0
MUC21	394263	bcgsc.ca	37	6	30954484	30954484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	MUC21-92	NM_001010909	exon2	c.A532G	p.S178G	GGGGCCAGCACAG	.	240	15	286	4	.	0	0	0	0	0
HLA-C	3107	bcgsc.ca	37	6	31239407	31239407	+	Missense_Mutation	SNP	G	G	T	rs17408553	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	HLA-C-90	NM_002117	exon2	c.C312A	p.N104K	GCGCAGGTTCCGC	.	202	7	201	1	G|0.602;T|0.398	0	0	0	0	0
GPANK1	7918	bcgsc.ca	37	6	31630241	31630241	+	Silent	SNP	C	C	T	rs7992	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GPANK1-91	NM_001199238	exon4	c.G873A	p.R291R	CTGGTCCCTCTTG	.	134	7	175	1	C|0.620;T|0.380	0	0	0	0	0
CUL9	23113	broad.mit.edu	37	6	43188511	43188511	+	Silent	SNP	T	T	C	rs41274934	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	CUL9-529	NM_015089	exon33	c.T6450C	p.Y2150Y	TGGCTATGTGGAG	.	92	3	98	0	T|0.999;C|0.001	0	0	0	0	0
HSP90AB1	3326	ucsc.edu	37	6	44221293	44221293	+	Silent	SNP	C	C	T	rs147025760	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	HSP90AB1-658	NM_007355	exon12	c.C2133T	p.L711L	CCCTCTCGAGGGC	.	152	24	146	8	C|0.960;T|0.040	0	0	0	0	0
TBX18	9096	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	85446964	85446964	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	TBX18-73	NM_001080508	exon8	c.C1263A	p.A421A	TGAGCGGGCACAG	.	260	14	220	0	.	0	0	0	0	0
SOGA3	387104	broad.mit.edu	37	6	127837119	127837119	+	Missense_Mutation	SNP	G	G	C	rs200377274		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001012279	exon2	c.C641G	p.A214G	GGGGAGGCCCCCT	.	33	9	17	3	.	0	0	0	0	0
LOC389458	0	bcgsc.ca	37	7	5112554	5112554	+	RNA	SNP	A	A	C	rs1130329	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	.	.	.	.	CCCAGGAGTCGGG	.	94	6	77	0	A|0.647;C|0.353	0	0	0	0	0
EIF2AK1	27102	broad.mit.edu	37	7	6078221	6078221	+	Missense_Mutation	SNP	G	G	A	rs142287286		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	EIF2AK1-408	NM_014413	exon10	c.C1201T	p.R401W	GGCCCCGCTTGTT	.	93	4	64	2	G|1.000;A|0.000	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	24	11	3	0	G|0.456;C|0.544	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	14	7	2	0	G|0.889;C|0.111	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	11	10	0	0	C|0.329;G|0.671	0	0	0	0	0
PDE1C	5137	broad.mit.edu	37	7	31867930	31867930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	PDE1C-94	NM_001191058	exon13	c.A1441C	p.T481P	CCATAGTGGACTT	.	85	4	73	0	.	0	0	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	RAMP3-90	NM_005856	exon1	c.G6A	p.E2E	CATGGAGACTGGA	.	10	8	2	0	G|0.760;A|0.240	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	8	8	0	0	T|0.010;C|0.990	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	PLEC-141	NM_201380	exon27	c.T3961C	p.L1321L	CAAGCAACTGGGC	.	25	25	1	0	G|0.246;A|0.754	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	9	9	0	0	G|0.992;C|0.006	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832719	5832719	+	Missense_Mutation	SNP	G	G	C	rs13302671	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	ERMP1-69	NM_024896	exon1	c.C309G	p.H103Q	CCCGCGGTGTCCA	.	15	6	6	0	G|0.981;C|0.019	0	0	0	0	0
SPTAN1	6709	broad.mit.edu	37	9	131371246	131371246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SPTAN1-158	NM_003127	exon35	c.G4585T	p.V1529F	AATGAGGTCTTGG	.	187	6	175	0	.	0	0	0	0	0
SNAPC4	6621	bcgsc.ca	37	9	139273288	139273288	+	Silent	SNP	C	C	T	rs3829112	byfrequency	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	SNAPC4-90	NM_003086	exon21	c.G2991A	p.E997E	TGTGCCCTCGGCC	.	250	8	200	3	C|0.845;T|0.155	0	0	0	0	0
AR	367	hgsc.bcm.edu	37	X	66765159	66765182	+	In_Frame_Del	DEL	GCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCA	-	rs72181988	alternate_allele	TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	GCAGCAGCAGCAGCAGCAGCAGCA	GCAGCAGCAGCAGCAGCAGCAGCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	AR-661	NM_000044	exon1	c.171_194del	p.57_65del	GCTGCTGCAGCAG	.	118	24	60	0	.	0	0	0	0	0
GPRASP2	114928	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	101971094	101971094	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	GPRASP2-131	NM_138437	exon4	c.G1297T	p.A433S	TTGGGGGCTGTGG	.	204	12	132	0	.	0	0	0	0	0
PLXNB3	5365	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153032639	153032639	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	PLXNB3-130	NM_001163257	exon4	c.G426A	p.L142L	CCAGCTGCTGCTG	.	151	38	72	1	.	0	0	0	0	0
AVL9	23080	broad.mit.edu	37	7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	AVL9-90	NM_015060	exon1	c.21_22insG	p.G7fs	GAGAGGCGGGGAT	.	208	9	64	0	.	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	AGCGTCATCTTGT	.	463	0	360	0	.	0	0	0	0	0
POTEE	445582	ucsc.edu	37	2	131976171	131976172	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-OR-A5JH-01A-11D-A30A-10	TCGA-OR-A5JH-10A-01D-A30A-10	CA	CA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	4eaa9703-dace-478d-b1ea-7c326ad34362	da172edc-7af4-48d6-bbab-2cf091662641	.	.	NM_001083538	exon1	c.A197G	p.H66C	GGTGCCACCACTG	.	173	0	211	0	A|0.500;G|0.500	0	0	0	0	0