Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RERE	473	hgsc.bcm.edu	37	1	8421186	8421186	+	Missense_Mutation	SNP	G	G	A	rs201922249		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	RERE-515	NM_012102	exon19	c.C2381T	p.P794L	GGAACAGGCGCTG	.	6	5	0	0	G|0.994;A|0.006	2	0	2	0	0
UBR4	23352	bcgsc.ca	37	1	19413261	19413261	+	Missense_Mutation	SNP	T	T	A	rs12584	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	UBR4-612	NM_020765	exon100	c.A14599T	p.M4867L	TCTCCATCTCCTC	.	239	7	306	1	T|0.490;A|0.510	30	30	0	0	0
TIE1	7075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	43775126	43775126	+	Missense_Mutation	SNP	C	C	T	rs140823224	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TIE1-1404	NM_005424	exon9	c.C1256T	p.A419V	TTCTTGCGGACAG	.	217	11	262	0	C|1.000;T|0.000	9	9	0	0	0
MAGI3	260425	bcgsc.ca	37	1	114196495	114196495	+	Silent	SNP	A	A	G	rs2359173	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	MAGI3-524	NM_152900	exon15	c.A2484G	p.T828T	TTCAACACAGAAT	.	94	5	88	0	A|0.803;G|0.197	3	3	0	0	0
ATP1A1OS	84852	broad.mit.edu	37	1	116948712	116948712	+	RNA	SNP	G	G	A	rs850610	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	.	.	.	.	ACTTTCGGCATCC	.	78	4	87	1	A|0.382;C|0.006;G|0.610;T|0.002	7	7	0	0	0
FLG	2312	bcgsc.ca	37	1	152281690	152281690	+	Missense_Mutation	SNP	C	C	T	rs12407748	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FLG-106	NM_002016	exon3	c.G5672A	p.R1891Q	TCGGCCCGAGAGG	.	218	6	263	2	C|0.851;T|0.149	0	0	0	0	0
GBAP1	2630	bcgsc.ca	37	1	155186742	155186742	+	RNA	SNP	G	G	A	rs1057941	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	.	.	.	.	TGAGCCGAGTGGG	.	115	8	185	3	G|0.551;A|0.449	1	1	0	0	0
CCDC19	25790	bcgsc.ca	37	1	159854251	159854251	+	Missense_Mutation	SNP	T	T	C	rs16842789	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CCDC19-91	NM_012337	exon7	c.A872G	p.E291G	AGCTGTTCCATAT	.	52	4	84	0	T|0.884;C|0.116	0	0	0	0	0
TMCO1	54499	broad.mit.edu	37	1	165712446	165712446	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TMCO1-68	NM_019026	exon6	c.579delC	p.S193fs	AATGAAGGAACAG	.	343	13	356	0	.	0	0	0	0	0
CAPN9	10753	bcgsc.ca	37	1	230923313	230923313	+	Missense_Mutation	SNP	C	C	T	rs12731961	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CAPN9-91	NM_006615	exon13	c.C1564T	p.R522W	GAGCAGCGGTTTC	.	76	5	88	1	C|0.793;T|0.207	0	0	0	0	0
TTC13	79573	bcgsc.ca	37	1	231042732	231042732	+	Silent	SNP	T	T	A	rs3811502	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TTC13-92	NM_024525	exon23	c.A2502T	p.V834V	TTCTGATACTGAT	.	185	10	236	0	T|0.505;A|0.495	6	6	0	0	0
LGALS8	3964	bcgsc.ca	37	1	236702374	236702374	+	Silent	SNP	G	G	A	rs2472126	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	LGALS8-91	NM_006499	exon5	c.G330A	p.L110L	GGTGCTGAAGGAC	.	193	8	252	3	A|0.527;C|0.006;G|0.466	11	11	0	0	0
DLG5	9231	bcgsc.ca	37	10	79566632	79566632	+	Silent	SNP	G	G	A	rs1058198	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	DLG5-98	NM_004747	exon26	c.C4851T	p.D1617D	GATGTCGTCCTTC	.	130	8	191	1	G|0.688;A|0.312	20	20	0	0	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	C10orf95-91	NM_024886	exon2	c.G253T	p.A85S	CGGAAGCTGTGGG	.	7	6	0	0	C|0.759;A|0.241	0	0	0	0	0
NRAP	4892	bcgsc.ca	37	10	115375528	115375528	+	Silent	SNP	C	C	A	rs11196397	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NRAP-522	NM_001261463	exon27	c.G3021T	p.P1007P	AGCAGTCGGTGTG	.	115	5	161	0	C|0.772;A|0.228	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	81	5	25	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	77	4	22	0	.	0	0	0	0	0
PTPRJ	5795	bcgsc.ca	37	11	48152214	48152214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PTPRJ-541	NM_001098503	exon8	c.C1561T	p.P521S	ATAGTTCCAAAAG	.	128	5	172	0	.	2	2	0	0	0
C11orf95	65998	hgsc.bcm.edu	37	11	63531175	63531175	+	Silent	SNP	C	C	G	rs2959886	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_001144936	exon5	c.G1752C	p.R584R	CCGCCACCGCGGC	.	21	16	0	0	C|0.216;G|0.784	5	0	5	0	0
CAPN1	823	bcgsc.ca	37	11	64950970	64950970	+	Silent	SNP	C	C	T	rs17583	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CAPN1-91	NM_001198869	exon4	c.C363T	p.I121I	GGCCATCGCCTCC	.	116	5	191	0	C|0.734;T|0.266	42	42	0	0	0
NPAS4	266743	bcgsc.ca	37	11	66189980	66189980	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NPAS4-90	NM_178864	exon3	c.T386A	p.L129H	ACCACCTCACTGT	.	163	6	181	1	.	0	0	0	0	0
NUMA1	4926	broad.mit.edu	37	11	71715139	71715139	+	Missense_Mutation	SNP	G	G	A	rs199699067		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NUMA1-633	NM_006185	exon26	c.C6130T	p.R2044W	GGCGCCGGTCAGC	.	59	3	42	0	.	0	0	0	0	0
PHOX2A	401	hgsc.bcm.edu	37	11	71954893	71954893	+	Silent	SNP	G	G	A	rs182932220		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PHOX2A-90	NM_005169	exon1	c.C156T	p.L52L	GGAGCCGAGCGCG	.	9	8	0	0	G|0.980;A|0.020	0	0	0	0	0
TMPO	7112	bcgsc.ca	37	12	98927830	98927830	+	Missense_Mutation	SNP	C	C	G	rs17459334	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TMPO-93	NM_003276	exon4	c.C1795G	p.Q599E	ATTAGTCAAGCTG	.	128	5	55	0	C|0.934;G|0.066	25	25	0	0	0
GOLGA3	2802	bcgsc.ca	37	12	133372758	133372758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GOLGA3-95	NM_001172557	exon11	c.C2149A	p.Q717K	GCTCCTGCTGCAA	.	57	5	59	0	.	16	16	0	0	0
NYNRIN	57523	bcgsc.ca	37	14	24878485	24878485	+	Silent	SNP	G	G	A	rs12897153	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NYNRIN-3	NM_025081	exon4	c.G1485A	p.P495P	TGAGCCGGGGGAT	.	49	4	73	0	G|0.896;A|0.104	1	1	0	0	0
NIN	51199	broad.mit.edu	37	14	51223460	51223460	+	Missense_Mutation	SNP	T	T	A	rs41299193	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	NIN-229	NM_020921	exon18	c.A4288T	p.I1430L	CCAGTATAACTTG	.	44	3	75	0	T|0.997;A|0.003	1	1	0	0	0
THBS1	7057	bcgsc.ca	37	15	39882178	39882178	+	Missense_Mutation	SNP	A	A	G	rs2228262	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	THBS1-653	NM_003246	exon13	c.A2099G	p.N700S	GGCCCAATGAGAA	.	145	6	218	0	A|0.930;G|0.070	8	8	0	0	0
SPINT1	6692	bcgsc.ca	37	15	41148199	41148199	+	Silent	SNP	C	C	T	rs659232	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SPINT1-91	NM_181642	exon9	c.C1275T	p.Y425Y	TTGTTACGGCAAC	.	130	5	172	1	C|0.173;T|0.827	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	8	8	0	0	A|0.226;C|0.774	3	0	3	0	0
LMAN1L	79748	bcgsc.ca	37	15	75113023	75113023	+	Silent	SNP	G	G	A	rs145422132	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	LMAN1L-90	NM_021819	exon8	c.G822A	p.R274R	GGCGAGGCAGCTG	.	53	4	54	0	G|0.980;A|0.020	0	0	0	0	0
ADAMTS7	11173	ucsc.edu	37	15	79067063	79067063	+	Silent	SNP	A	A	G	rs117662146	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ADAMTS7-226	NM_014272	exon12	c.T1779C	p.P593P	GCCAGCAGGGCAG	.	52	7	59	2	A|0.996;G|0.004	0	0	0	0	0
POLG	5428	broad.mit.edu	37	15	89876828	89876830	+	In_Frame_Del	DEL	TGC	TGC	-	rs41550117	bycluster;alternate_allele	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	POLG-228	NM_002693	exon2	c.156_158del	p.52_53del	TGCTGTTGCTGCT	.	14	8	6	0	.	0	0	0	0	0
PDIA2	64714	bcgsc.ca	37	16	336396	336396	+	Missense_Mutation	SNP	G	G	A	rs400037	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PDIA2-91	NM_006849	exon8	c.G1163A	p.R388Q	ATCAGCGGCCAGT	.	239	7	208	1	G|0.810;A|0.190	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	12	5	0	0	G|0.570;T|0.430	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	2	0	2	0	0
GPR97	222487	bcgsc.ca	37	16	57722328	57722328	+	Silent	SNP	C	C	T	rs12444859	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GPR97-91	NM_170776	exon12	c.C1605T	p.S535S	CTCCTCCTCTACT	.	205	7	199	0	C|0.646;T|0.354	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	5	5	0	0	G|0.292;A|0.708	0	0	0	0	0
KIAA1609	57707	bcgsc.ca	37	16	84516309	84516309	+	Silent	SNP	G	G	A	rs433293	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	KIAA1609-92	NM_020947	exon6	c.C966T	p.N322N	GCATCTGTTGTCC	.	367	12	317	4	G|0.625;A|0.375	0	0	0	0	0
ZNF469	84627	broad.mit.edu;bcgsc.ca	37	16	88502208	88502208	+	Missense_Mutation	SNP	A	A	T	rs3812954		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_001127464	exon2	c.A8246T	p.D2749V	CGGAGGACAGCAG	.	65	4	50	0	A|0.058;T|0.942	3	3	0	0	0
ANKRD11	29123	hgsc.bcm.edu	37	16	89346883	89346883	+	Missense_Mutation	SNP	C	C	G	rs60520302	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ANKRD11-139	NM_001256183	exon9	c.G6067C	p.A2023P	ACGGGGCAGGAGA	.	9	6	0	0	C|0.952;G|0.048	12	6	6	0	0
GAS8	2622	bcgsc.ca	37	16	90102835	90102835	+	Silent	SNP	A	A	G	rs868045	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GAS8-227	NM_001481	exon6	c.A597G	p.E199E	GGACGAACTCGAC	.	356	9	332	0	A|0.644;G|0.356	34	34	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274415	39274415	+	Silent	SNP	C	C	T	rs425487		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_033059	exon1	c.G153A	p.R51R	CTGGGGCCTGCAG	.	167	7	49	1	.	2	0	2	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254236	42254236	+	Missense_Mutation	SNP	G	G	A	rs74491716	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ASB16-227	NM_080863	exon3	c.G700A	p.A234T	CATGGCGCCGACG	.	33	20	2	0	G|0.984;A|0.016	5	5	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	rs7212573	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ASB16-227	NM_080863	exon3	c.A745G	p.T249A	CTGAACACGGCGT	.	8	6	0	0	A|0.476;G|0.524	0	0	0	0	0
COG1	9382	hgsc.bcm.edu	37	17	71189428	71189428	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	COG1-91	NM_018714	exon1	c.G220C	p.V74L	TGCGCCGTGGGGC	.	117	37	3	0	.	7	5	2	0	0
SLC9A3R1	9368	hgsc.bcm.edu	37	17	72745313	72745313	+	Missense_Mutation	SNP	C	C	G	rs35910969	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SLC9A3R1-90	NM_004252	exon1	c.C328G	p.L110V	GAGGAGCTGCTGC	.	9	5	0	0	C|0.988;G|0.012	23	10	13	0	0
TNRC6C	57690	hgsc.bcm.edu	37	17	76100842	76100842	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TNRC6C-24	NM_001142640	exon22	c.C5097T	p.S1699S	GCCCAGCGCCGAC	.	23	9	0	0	.	3	3	0	0	0
FSCN2	25794	hgsc.bcm.edu	37	17	79504073	79504073	+	Silent	SNP	C	C	T	rs143561119	by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_001077182	exon5	c.C1518T	p.D506D	TGCCGACGCCCCG	.	8	7	0	0	C|0.964;T|0.036	0	0	0	0	0
UTS2R	2837	hgsc.bcm.edu	37	17	80332223	80332223	+	Missense_Mutation	SNP	C	C	G	rs41344948	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	UTS2R-153	NM_018949	exon1	c.C23G	p.P8R	AGTCCCCGAGCAG	.	17	10	0	0	C|0.990;G|0.010	0	0	0	0	0
POLRMT	5442	hgsc.bcm.edu	37	19	622326	622326	+	Silent	SNP	C	C	G	rs61746452	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	POLRMT-92	NM_005035	exon9	c.G1674C	p.A558A	CTCGGGCGCCCCC	.	42	12	0	0	C|0.027;G|0.973	12	12	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	4	4	0	0	A|0.114;G|0.886	2	0	2	0	0
FBN3	84467	bcgsc.ca	37	19	8176919	8176919	+	Silent	SNP	C	C	T	rs4804264	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FBN3-100	NM_032447	exon30	c.G3903A	p.P1301P	ACTCCCCGGGATG	.	278	9	265	3	C|0.388;N|0.000	0	0	0	0	0
OR1I1	126370	bcgsc.ca	37	19	15198851	15198851	+	Silent	SNP	A	A	T	rs16980313	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OR1I1-71	NM_001004713	exon1	c.A975T	p.P325P	TGTTCCAGGATCA	.	276	8	268	2	A|0.868;T|0.132	0	0	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337557	17337557	+	Missense_Mutation	SNP	G	G	T	rs10425488	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OCEL1-68	NM_024578	exon2	c.G125T	p.R42L	GGACCCGCCCATC	.	11	5	0	0	G|0.934;T|0.066	20	12	8	0	0
PGLS	25796	hgsc.bcm.edu	37	19	17622614	17622614	+	Silent	SNP	C	C	T	rs11086075	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PGLS-90	NM_012088	exon1	c.C133T	p.L45L	CTCGGCCTGTCGG	.	4	4	0	0	C|0.617;T|0.383	11	5	6	0	0
CCDC124	115098	bcgsc.ca	37	19	18047283	18047283	+	Silent	SNP	T	T	G	rs4808722	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CCDC124-68	NM_138442	exon2	c.T54G	p.R18R	GGCACGTAGGGCA	.	306	11	166	2	T|0.594;G|0.406	139	138	0	0	1
FAM187B	148109	bcgsc.ca	37	19	35719257	35719257	+	Silent	SNP	G	G	A	rs11673347	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FAM187B-92	NM_152481	exon1	c.C327T	p.D109D	CTGAAAGTCAATT	.	172	6	147	0	G|0.613;A|0.386	0	0	0	0	0
SPTBN4	57731	hgsc.bcm.edu	37	19	41073913	41073913	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SPTBN4-94	NM_020971	exon31	c.G6681C	p.V2227V	GCAGGTGCGGCCA	.	12	6	1	0	.	0	0	0	0	0
ZNF227	7770	bcgsc.ca	37	19	44739303	44739303	+	Silent	SNP	T	T	C	rs2279073	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZNF227-91	NM_182490	exon6	c.T720C	p.N240N	CTCCAATCAGAAA	.	51	4	35	0	T|0.587;C|0.413	15	15	0	0	0
SIX5	147912	hgsc.bcm.edu	37	19	46269148	46269148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SIX5-91	NM_175875	exon3	c.G1831A	p.A611T	CGTGAGCCTCTGG	.	24	16	1	0	.	50	30	20	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PTGIR-522	NM_000960	exon2	c.G159C	p.V53V	TCCGGTCACCAGC	.	8	7	0	0	C|0.254;G|0.746	1	0	1	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	11	10	0	0	.	0	0	0	0	0
ZNF814	730051	broad.mit.edu;bcgsc.ca	37	19	58385954	58385954	+	Silent	SNP	T	T	C	rs10412929	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_001144989	exon3	c.A804G	p.K268K	TTCATGTTTTTTT	.	155	7	99	1	T|0.664;C|0.336	1	1	0	0	0
FAM179A	165186	bcgsc.ca	37	2	29256374	29256374	+	Missense_Mutation	SNP	C	C	T	rs60403047	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FAM179A-26	NM_199280	exon16	c.C2170T	p.R724C	AAAGGCCGCAAGG	.	78	5	117	0	C|0.923;T|0.077	1	1	0	0	0
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	71650459	71650459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZNF638-94	NM_014497	exon22	c.C3815G	p.S1272W	CTGTTTCGGAAAT	.	159	8	172	0	.	18	18	0	0	0
DYSF	8291	bcgsc.ca	37	2	71740958	71740958	+	Silent	SNP	T	T	C	rs35392229	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	DYSF-158	NM_001130982	exon7	c.T666C	p.P222P	ACTACCTTCACGT	.	125	7	167	3	T|0.971;C|0.029	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	72	33	34	6	.	1	1	0	0	0
RGPD4	285190	broad.mit.edu	37	2	108496435	108496435	+	Missense_Mutation	SNP	T	T	A	rs832352	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	RGPD4-2	NM_182588	exon21	c.T4936A	p.W1646R	CCATTATGGCATG	.	208	5	242	0	T|0.295;A|0.705	2	2	0	0	0
ESPNL	339768	hgsc.bcm.edu	37	2	239009336	239009336	+	Silent	SNP	G	G	A	rs61744770	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ESPNL-69	NM_194312	exon1	c.G276A	p.E92E	CCGCGAGGGGGGC	.	7	7	0	0	G|0.739;A|0.261	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	7	7	0	0	T|0.454;C|0.546	1	0	1	0	0
COX4I2	84701	bcgsc.ca	37	20	30232673	30232673	+	Missense_Mutation	SNP	G	G	A	rs11907253	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	COX4I2-227	NM_032609	exon5	c.G482A	p.R161H	CCTCCCGCTGGGA	.	176	8	171	3	G|0.919;A|0.081	7	7	0	0	0
DIDO1	11083	hgsc.bcm.edu	37	20	61510599	61510599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	DIDO1-96	NM_001193369	exon16	c.G6709A	p.A2237T	GCGAGGCGGTGCC	.	33	14	3	0	.	2	1	1	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780296	20780296	+	Missense_Mutation	SNP	G	G	A	rs9680797	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SCARF2-341	NM_153334	exon11	c.C1982T	p.P661L	TCAGGTGGCGGCG	.	20	19	0	0	G|0.977;A|0.023	0	0	0	0	0
FANCD2	2177	ucsc.edu	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FANCD2-229	NM_001018115	exon26	c.A2391G	p.V797V	GATTGTAAATGCC	.	83	8	75	2	A|0.909;G|0.091	0	0	0	0	0
VILL	50853	bcgsc.ca	37	3	38038982	38038982	+	Silent	SNP	T	T	C	rs6809649	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	VILL-90	NM_015873	exon6	c.T570C	p.A190A	GCTGGCTTTGACC	.	119	5	113	0	T|0.768;C|0.232	0	0	0	0	0
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130361853	130361853	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	COL6A6-76	NM_001102608	exon30	c.T5213A	p.V1738E	AGTATGTGCGAGA	.	111	39	106	0	.	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	17	9	0	0	G|0.797;A|0.203	1	1	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	35	8	1	0	.	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	10	10	1	0	G|0.025;C|0.975	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536520	88536520	+	Silent	SNP	T	T	C	rs115476207	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	DSPP-90	NM_014208	exon5	c.T2706C	p.D902D	CAGTGATAGTGAC	.	928	24	873	15	T|0.673;C|0.327	0	0	0	0	0
FRG1	2483	bcgsc.ca	37	4	190878626	190878626	+	Missense_Mutation	SNP	G	G	A	rs71229055		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	FRG1-90	NM_004477	exon6	c.G506A	p.S169N	CAAAAAGTAAAAC	.	537	18	582	11	G|0.500;A|0.500	150	150	0	0	0
SREK1IP1	285672	ucsc.edu	37	5	64023981	64023981	+	Silent	SNP	C	C	T	rs275819	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SREK1IP1-23	NM_173829	exon4	c.G231A	p.K77K	TTCTTTCTTCTTT	.	24	6	15	0	T|0.623;C|0.377	16	8	8	0	0
ABLIM3	22885	broad.mit.edu	37	5	148637920	148637920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ABLIM3-93	NM_014945	exon24	c.G2005T	p.A669S	CGGCTGGCCCTCT	.	52	4	51	1	.	3	3	0	0	0
CDHR2	54825	bcgsc.ca	37	5	176011889	176011889	+	Silent	SNP	G	G	A	rs4868660	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CDHR2-70	NM_017675	exon19	c.G2607A	p.A869A	AGTGGCGGCCAAC	.	229	11	187	2	G|0.726;A|0.274	2	2	0	0	0
HUS1B	135458	hgsc.bcm.edu	37	6	656555	656555	+	Missense_Mutation	SNP	G	G	T	rs1766848	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	HUS1B-227	NM_148959	exon1	c.C390A	p.H130Q	CAGATCGTGCACC	.	10	6	0	0	G|0.938;T|0.062	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	4	4	0	0	G|0.000;C|1.000	5	0	5	0	0
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29079940	29079940	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	OR2J3-90	NM_001005216	exon1	c.G273A	p.P91P	GGGCCCGGAAAAG	.	130	12	175	0	.	0	0	0	0	0
TMEM30A	55754	bcgsc.ca	37	6	75994151	75994151	+	Silent	SNP	A	A	G	rs240374	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	TMEM30A-90	NM_001143958	exon1	c.T204C	p.I68I	GACAAAAATGCCA	.	92	5	145	0	A|0.828;G|0.172	30	30	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193464	6193464	+	Missense_Mutation	SNP	T	T	G	rs61732616	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	USP42-659	NM_032172	exon15	c.T2279G	p.L760R	AATCCCTGGAGGA	.	26	9	2	0	T|0.731;G|0.269	4	2	2	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	14	14	0	0	C|0.329;G|0.671	12	0	12	0	0
NPSR1-AS1	404744	bcgsc.ca;mdanderson.org	37	7	34819182	34819182	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	.	.	.	.	CATATTCAGAAAA	.	152	38	120	0	.	0	0	0	0	0
MYO1G	64005	bcgsc.ca	37	7	45004063	45004063	+	Missense_Mutation	SNP	T	T	C	rs7792760	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	MYO1G-137	NM_033054	exon19	c.A2582G	p.Q861R	TTGTCCTGAAGTG	.	116	5	118	1	C|0.890;N|0.000	5	5	0	0	0
CFTR	1080	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	117242878	117242878	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CFTR-518	NM_000492	exon16	c.2620-2A>T	.	CATTCCAGGTGGC	.	213	13	176	0	.	0	0	0	0	0
EPHA1	2041	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143098587	143098587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	EPHA1-1436	NM_005232	exon3	c.C262A	p.R88S	CCCCGCGGTAGAT	.	169	21	149	1	.	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	21	10	0	0	G|0.907;A|0.093	5	0	5	0	0
ADAMDEC1	27299	bcgsc.ca	37	8	24261526	24261526	+	Missense_Mutation	SNP	A	A	G	rs3765124	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ADAMDEC1-228	NM_014479	exon13	c.A1331G	p.N444S	GTACCAATCTCTG	.	222	6	156	0	A|0.687;G|0.313	0	0	0	0	0
CSMD3	114788	bcgsc.ca	37	8	113418839	113418839	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	CSMD3-1132	NM_198123	exon35	c.A5723G	p.Y1908C	AGAATATATCCTG	.	80	4	74	0	.	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144892937	144892937	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SCRIB-228	NM_015356	exon12	c.G1323T	p.P441P	GCTCGGCGGGGCA	.	50	19	24	0	.	9	3	6	0	0
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107568702	107568702	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	ABCA1-1016	NM_005502	exon31	c.C4284G	p.P1428P	CTGGCAGGGCGTG	.	113	37	120	0	.	0	0	0	0	0
MVB12B	89853	bcgsc.ca	37	9	129102840	129102840	+	Silent	SNP	G	G	A	rs1888156	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	NM_001011703	exon2	c.G135A	p.T45T	AGAAACGTCAATG	.	291	7	284	0	G|0.676;A|0.324	1	1	0	0	0
GLE1	2733	hgsc.bcm.edu	37	9	131303399	131303399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	GLE1-22	NM_001003722	exon16	c.G2047T	p.D683Y	CACAAGGACATTC	.	80	5	82	0	.	28	28	0	0	0
VAV2	7410	bcgsc.ca	37	9	136650966	136650966	+	Silent	SNP	C	C	T	rs142033790	byfrequency	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	VAV2-1273	NM_001134398	exon17	c.G1464A	p.Q488Q	GAAGCCCTGCTTT	.	97	5	107	1	C|0.995;T|0.005	6	6	0	0	0
SLC34A3	142680	hgsc.bcm.edu	37	9	140128914	140128914	+	Silent	SNP	C	C	T	rs113568956		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	SLC34A3-90	NM_001177317	exon11	c.C1140T	p.L380L	CGTCCTCGCGGGC	.	17	8	0	0	C|0.995;T|0.005	0	0	0	0	0
MIR663B	100313824	bcgsc.ca	37	2	133014651	133014652	+	RNA	INS	-	-	C	novel		TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	.	.	.	.	.	CTCGGCACCACCG	.	81	30	33	0	.	0	0	0	0	0
C21orf58	54058	broad.mit.edu	37	21	47721985	47721986	+	In_Frame_Ins	INS	-	-	TGG	rs71318063	bycluster;by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	C21orf58-91	NM_058180	exon8	c.897_898insCCA	p.H299delinsHH	CACAGCATGGTGG	.	71	10	5	0	-|0.500;TGG|0.500	0	0	0	0	0
KIAA1211	57482	hgsc.bcm.edu	37	4	57180576	57180577	+	In_Frame_Ins	INS	-	-	GGAGCGGAG	rs138358443	by1000genomes	TCGA-OR-A5JQ-01A-11D-A29I-10	TCGA-OR-A5JQ-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	e3b59a5b-bc3e-46eb-b2b9-44a50b5f4564	9b271d36-bb48-4d62-86ed-1660f35ce5c0	.	KIAA1211-70	NM_020722	exon8	c.908_909insGGAGCGGAG	p.A303delinsAERR	AGGACGCGGAGCG	.	31	20	2	0	.	0	0	0	0	0