Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SPRR2F	6705	broad.mit.edu	37	1	153085135	153085135	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SPRR2F-68	NM_001014450	exon2	c.G75A	p.E25E	ACATGGCTCTGGG	.	71	11	49	1	.	0	0	0	0	0
C1orf105	92346	bcgsc.ca	37	1	172431333	172431333	+	Missense_Mutation	SNP	A	A	G	rs16844498	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C1orf105-69	NM_139240	exon5	c.A289G	p.M97V	AGAACAATGAAAA	.	189	7	298	0	A|0.949;G|0.051	1	1	0	0	0
PLEKHA6	22874	bcgsc.ca	37	1	204242838	204242838	+	Silent	SNP	A	A	C	rs33911350	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PLEKHA6-654	NM_014935	exon3	c.T18G	p.G6G	TTTCCCACCTGTT	.	124	8	123	4	A|0.831;C|0.169	0	0	0	0	0
PTPLA	9200	hgsc.bcm.edu	37	10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	rs7895850	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PTPLA-226	NM_014241	exon1	c.G190C	p.E64Q	TCCGCTCGCCGGG	.	26	15	2	0	C|0.007;G|0.002;T|0.991	4	0	1	0	3
ALOX5	240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45938628	45938628	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ALOX5-228	NM_000698	exon10	c.G1415T	p.R472L	TCTACCGGGACGA	.	299	126	140	0	.	3	3	0	0	0
GPRIN2	9721	ucsc.edu	37	10	46999601	46999601	+	Missense_Mutation	SNP	G	G	A	rs9422022	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GPRIN2-90	NM_014696	exon3	c.G721A	p.V241M	AGGGAGGTGAGGG	.	209	29	104	0	G|0.639;A|0.361	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	37	8	0	0	G|0.901;A|0.099	0	0	0	0	0
PANK1	53354	hgsc.bcm.edu	37	10	91404832	91404832	+	Silent	SNP	T	T	C	rs12769113	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PANK1-90	NM_148977	exon1	c.A228G	p.A76A	CTCCTCTGCGCCC	.	6	6	0	0	T|0.708;C|0.292	0	0	0	0	0
PCGF5	84333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	93024204	93024204	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCGF5-226	NM_001256549	exon8	c.A590G	p.N197S	TGTGCAATGGTGA	.	99	40	60	0	.	45	25	20	0	0
MUC2	4583	bcgsc.ca	37	11	1093311	1093311	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MUC2-90	NM_002457	exon30	c.C5130A	p.T1710T	CCCAACCCCAACA	.	73	16	85	8	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093375	1093375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MUC2-90	NM_002457	exon30	c.C5194T	p.P1732S	GTGACCCCAACCC	.	110	11	101	3	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_002458	exon17	c.A2041G	p.S681G	CAGCTCAGCGACT	.	126	12	26	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	121	8	23	0	.	0	0	0	0	0
KRTAP5-5	439915	bcgsc.ca	37	11	1651646	1651646	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KRTAP5-5-23	NM_001001480	exon1	c.C576T	p.Y192Y	GCCCTACTGCTGC	.	138	13	124	0	.	0	0	0	0	0
OR51T1	401665	broad.mit.edu	37	11	4903672	4903672	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR51T1-115	NM_001004759	exon1	c.C624A	p.C208X	ATTTTGCTACCAC	.	141	7	169	0	.	0	0	0	0	0
OR51G2	81282	bcgsc.ca	37	11	4936721	4936721	+	Missense_Mutation	SNP	C	C	T	rs60718970	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR51G2-70	NM_001005238	exon1	c.G173A	p.R58H	AGTGAGCGCTCTG	.	124	6	149	0	C|0.986;T|0.014	0	0	0	0	0
TPCN2	219931	bcgsc.ca	37	11	68855363	68855363	+	Missense_Mutation	SNP	G	G	A	rs3829241	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TPCN2-90	NM_139075	exon25	c.G2201A	p.G734E	AGCCCGGGGAGGA	.	61	5	94	0	G|0.756;A|0.244	4	4	0	0	0
TRIM49	57093	bcgsc.ca	37	11	89531764	89531764	+	Missense_Mutation	SNP	T	T	C	rs672762	bycluster;bysubmitter	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TRIM49-84	NM_020358	exon8	c.A893G	p.N298S	ATATCATTGTTGG	.	21	9	59	3	T|0.500;C|0.500	0	0	0	0	0
MMP8	4317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102595542	102595542	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MMP8-229	NM_002424	exon1	c.G45T	p.V15V	AATCTGCACATGG	.	99	16	166	0	.	0	0	0	0	0
NXPE4	54827	ucsc.edu;bcgsc.ca	37	11	114442103	114442103	+	Missense_Mutation	SNP	A	A	G	rs550897	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001077639	exon6	c.T1192C	p.Y398H	AACAATATTTTTG	.	58	6	87	0	T|0.145;G|0.383	0	0	0	0	0
PCSK7	9159	ucsc.edu;bcgsc.ca	37	11	117077034	117077034	+	Silent	SNP	A	A	G	rs28590104	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCSK7-658	NM_004716	exon17	c.T2037C	p.T679T	GTAAACAGTCCAG	.	50	7	63	2	A|0.563;G|0.437	12	12	0	0	0
CEP164	22897	bcgsc.ca	37	11	117266312	117266312	+	Missense_Mutation	SNP	C	C	G	rs2305830	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CEP164-69	NM_001271933	exon23	c.C2972G	p.T991S	AGCACACCCACCT	.	116	8	115	1	C|0.710;G|0.290	6	6	0	0	0
GRIN2B	2904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13716624	13716624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GRIN2B-231	NM_000834	exon13	c.C3548T	p.T1183M	TCGCCCGTCCCGT	.	107	47	76	0	.	0	0	0	0	0
DDX11	1663	ucsc.edu	37	12	31244689	31244689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DDX11-229	NM_030653	exon10	c.G1126A	p.A376T	CATGCGGCCACTC	.	947	134	272	67	.	6	3	3	0	0
KRT83	3889	broad.mit.edu	37	12	52709845	52709845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KRT83-91	NM_002282	exon7	c.C1094A	p.A365D	CTGAGGGCCGCCT	.	130	13	51	3	.	0	0	0	0	0
OR6C2	341416	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55846284	55846284	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR6C2-70	NM_054105	exon1	c.C287G	p.A96G	CTTGTGCCAGTCA	.	78	27	66	1	.	0	0	0	0	0
EEA1	8411	broad.mit.edu;bcgsc.ca	37	12	93226501	93226501	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	EEA1-229	NM_003566	exon11	c.A1041G	p.Q347Q	AAGCTGTTGACAA	.	75	6	86	0	.	13	13	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	7	5	0	0	A|0.273;G|0.727	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	16	11	0	0	C|0.752;T|0.248	0	0	0	0	0
VSIG10	54621	bcgsc.ca	37	12	118506186	118506186	+	Silent	SNP	A	A	T	rs67405503	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_019086	exon8	c.T1563A	p.L521L	ACCTTGAAGATCC	.	263	10	168	0	A|0.602;T|0.398	0	0	0	0	0
TAOK3	51347	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118619354	118619354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TAOK3-933	NM_016281	exon15	c.G1388A	p.G463D	TTATAACCTGACA	.	237	42	106	1	.	49	42	7	0	0
LRRC43	254050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	122684857	122684857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LRRC43-135	NM_001098519	exon8	c.G1471A	p.V491M	ACCACCGTGACCA	.	193	62	86	0	.	0	0	0	0	0
SACS	26278	bcgsc.ca	37	13	23912220	23912220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SACS-298	NM_014363	exon10	c.C5795A	p.A1932D	CTAGTGGCCAGGT	.	60	4	87	0	.	0	0	0	0	0
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	42761266	42761289	+	Frame_Shift_Del	DEL	TGATGCCGTGGCCAGTAAAGTAAG	TGATGCCGTGGCCAGTAAAGTAAG	-	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	TGATGCCGTGGCCAGTAAAGTAAG	TGATGCCGTGGCCAGTAAAGTAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DGKH-652	NM_001204504	exon15	c.1620_1638del	p.540_546del	TGTAGCTGATGCC	.	35	5	142	0	.	0	0	0	0	0
COG3	83548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	46050394	46050394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	COG3-154	NM_031431	exon2	c.C233T	p.S78L	TGACTTCAGTAGT	.	43	28	77	0	.	8	0	8	0	0
CCDC168	643677	broad.mit.edu;bcgsc.ca	37	13	103387768	103387768	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001146197	exon4	c.C15279T	p.N5093N	TATCACGTTCTCC	.	250	10	260	0	.	0	0	0	0	0
FBXO33	254170	hgsc.bcm.edu	37	14	39901157	39901157	+	Silent	SNP	C	C	A	rs61999077	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	FBXO33-658	NM_203301	exon1	c.G210T	p.S70S	GGGCAGCGACGCA	.	4	4	0	0	C|0.935;A|0.065	1	0	1	0	0
DDHD1	80821	hgsc.bcm.edu	37	14	53619681	53619681	+	Missense_Mutation	SNP	C	C	T	rs61985140		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DDHD1-92	NM_001160147	exon1	c.G136A	p.G46S	CCCCGCCGGGCAG	.	23	22	0	0	C|0.993;T|0.007	1	0	1	0	0
IRF2BPL	64207	broad.mit.edu	37	14	77493762	77493767	+	In_Frame_Del	DEL	TGCTGC	TGCTGC	-	rs71125518	alternate_allele	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	IRF2BPL-90	NM_024496	exon1	c.369_374del	p.123_125del	TGTTGTTGCTGCT	.	28	9	10	0	CTG|1.000;|0.000	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	4	4	0	0	G|0.327;T|0.673	7	0	7	0	0
C15orf55	256646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34648579	34648579	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C15orf55-206	NM_175741	exon7	c.G2286T	p.L762L	GGGACTGGGCTCC	.	151	65	104	0	.	0	0	0	0	0
CASC5	57082	bcgsc.ca	37	15	40915045	40915045	+	Silent	SNP	T	T	G	rs8041534	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CASC5-660	NM_170589	exon11	c.T2661G	p.T887T	TAAGACTATTGTA	.	171	7	173	1	T|0.633;G|0.367	0	0	0	0	0
RAD51	5888	broad.mit.edu	37	15	41020953	41020953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	RAD51-563	NM_133487	exon7	c.C578A	p.A193D	CATATGCTCGAGC	.	88	5	50	0	.	3	3	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	11	11	0	0	A|0.226;C|0.774	1	0	1	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	8	7	0	0	G|0.479;T|0.521	0	0	0	0	0
CHRNA3	1136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	78894294	78894294	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CHRNA3-515	NM_000743	exon5	c.C690A	p.D230E	TGTGATGTCGGGG	.	267	93	194	0	.	3	3	0	0	0
NARFL	64428	hgsc.bcm.edu	37	16	790926	790926	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NARFL-90	NM_022493	exon1	c.G60A	p.P20P	CTGAGACGGCCCG	.	38	23	0	0	.	0	0	0	0	0
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5115841	5115841	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C16orf89-92	NM_001098514	exon1	c.G69A	p.L23L	CCCAGGCAGTGAG	.	250	100	135	0	.	0	0	0	0	0
ABCC6	368	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	16256886	16256886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ABCC6-93	NM_001171	exon24	c.G3470T	p.S1157I	CTCTGGCTTTCAT	.	177	76	105	1	.	1	1	0	0	0
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21061229	21061229	+	Splice_Site	SNP	A	A	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DNAH3-167	NM_017539	exon31	c.4347+2T>A	.	TTGCTTACCTGCT	.	95	39	36	0	.	0	0	0	0	0
FBRS	64319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30677859	30677859	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	FBRS-23	NM_001105079	exon6	c.G240C	p.L80F	ACCTTTGAGGGTG	.	173	57	89	0	.	4	2	2	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	6	6	0	0	G|0.001;A|0.999	0	0	0	0	0
SLC38A8	146167	bcgsc.ca	37	16	84070500	84070500	+	Silent	SNP	C	C	G	rs1317524	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SLC38A8-68	NM_001080442	exon2	c.G195C	p.S65S	GACCAACGAGACC	.	165	7	68	0	C|0.617;G|0.383	0	0	0	0	0
SGSM2	9905	bcgsc.ca	37	17	2275734	2275734	+	Silent	SNP	C	C	G	rs3213712	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SGSM2-68	NM_014853	exon15	c.C1740G	p.S580S	GGCCTCCGCGGGC	.	139	8	144	0	C|0.810;G|0.190	3	3	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	257	22	347	32	.	25	3	22	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	6	6	0	0	G|0.001;C|0.999	2	0	2	0	0
PCGF2	7703	broad.mit.edu	37	17	36891628	36891628	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCGF2-658	NM_007144	exon11	c.A883C	p.T295P	GGTGGGTGGCTGG	.	82	10	86	9	.	40	39	1	0	0
KRTAP4-11	653240	bcgsc.ca	37	17	39274319	39274319	+	Missense_Mutation	SNP	G	G	C	rs199712484		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_033059	exon1	c.C249G	p.S83R	GCAGCAGCTGGAC	.	132	32	44	2	.	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274416	39274416	+	Missense_Mutation	SNP	C	C	T	rs408579	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_033059	exon1	c.G152A	p.R51K	TGGGGCCTGCAGC	.	144	32	65	3	.	0	0	0	0	0
RNF157	114804	hgsc.bcm.edu	37	17	74154491	74154491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	RNF157-228	NM_052916	exon13	c.G1396A	p.V466I	GCTGAACCGACGG	.	62	5	65	0	.	11	11	0	0	0
ANKRD20A5P	440482	ucsc.edu	37	18	14183747	14183747	+	RNA	SNP	T	T	C	rs62085006		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ANKRD20A5P-90	.	.	.	.	AGAAAATAGAACG	.	44	7	50	4	.	0	0	0	0	0
LOXHD1	125336	broad.mit.edu;bcgsc.ca	37	18	44057816	44057816	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_144612	exon40	c.G6255A	p.K2085K	CTGGACCTTGCTG	.	180	7	161	0	.	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	5	5	0	0	C|0.780;G|0.220	0	0	0	0	0
LPPR3	0	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	814975	814975	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001270366	exon5	c.C510T	p.Y170Y	GAGAGTGTAGTTG	.	248	100	123	1	.	0	0	0	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	rs1062223	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	10	7	0	0	G|0.892;A|0.108	2	1	1	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C19orf10-90	NM_019107	exon1	c.G34C	p.G12R	TCGCGCCGACGCC	.	9	8	0	0	C|0.752;G|0.248	9	0	9	0	0
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9362064	9362064	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR7E24-47	NM_001079935	exon1	c.C345A	p.C115X	AGGCTGCCTGACT	.	76	34	32	0	.	0	0	0	0	0
DNM2	1785	broad.mit.edu	37	19	10939897	10939897	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DNM2-471	NM_001005361	exon19	c.A2244C	p.V748V	GCCTGTACCCCCG	.	177	36	81	13	.	192	185	5	2	0
SLC5A5	6528	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	17983255	17983255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SLC5A5-93	NM_000453	exon1	c.A127G	p.S43G	CAGCGCAGCGCTG	.	31	12	11	0	.	0	0	0	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980172	18980172	+	Missense_Mutation	SNP	G	G	A	rs4808863	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GDF1-226	NM_001492	exon8	c.C353T	p.A118V	GCCGAGGCAGGCT	.	11	7	2	0	G|0.715;A|0.285	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183282	33183282	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NUDT19-22	NM_001105570	exon1	c.T416G	p.L139R	GCGTGCTGCTGCT	.	16	5	1	0	.	2	2	0	0	0
CEP89	84902	bcgsc.ca	37	19	33444556	33444556	+	Missense_Mutation	SNP	T	T	C	rs73579706	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CEP89-94	NM_032816	exon4	c.A457G	p.S153G	CATCACTGTGGCC	.	100	8	73	0	T|0.500;C|0.500	3	3	0	0	0
KIAA0355	9710	ucsc.edu	37	19	34843761	34843761	+	Silent	SNP	C	C	A	rs397414	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIAA0355-91	NM_014686	exon14	c.C3114A	p.P1038P	CCCACCCCAGCCC	.	37	5	12	0	C|0.379;A|0.621	0	0	0	0	0
FAM98C	147965	hgsc.bcm.edu	37	19	38894294	38894294	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	FAM98C-91	NM_174905	exon3	c.G309T	p.A103A	TGGCGCGGCTGCG	.	6	5	0	0	.	9	3	6	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	7	7	0	0	G|0.349;A|0.651	0	0	0	0	0
CYP2B6	1555	bcgsc.ca	37	19	41512841	41512841	+	Missense_Mutation	SNP	G	G	T	rs56308434		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CYP2B6-92	NM_000767	exon4	c.G516T	p.Q172H	CTTCCAGTCCATT	.	174	7	89	0	.	0	0	0	0	0
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42855429	42855429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MEGF8-23	NM_001271938	exon16	c.G2798A	p.R933Q	GCCGGCGGGGCCG	.	112	52	30	0	.	6	3	3	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	29	13	0	0	T|0.861;C|0.139	1092	577	511	2	2
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	9	6	0	0	C|0.804;T|0.196	17	12	5	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258699	48258699	+	Missense_Mutation	SNP	C	C	T	rs11538665		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GLTSCR2-514	NM_015710	exon9	c.C1148T	p.A383V	GGCTGGCGGAGCT	.	4	4	0	0	G|0.994;A|0.006	92	28	64	0	0
LILRB3	11025	ucsc.edu	37	19	54725992	54725992	+	Silent	SNP	G	G	A	rs148339740	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LILRB3-93	NM_006864	exon4	c.C366T	p.S122S	GGGTTTGCTGTAG	.	121	19	100	9	G|0.881;A|0.119	0	0	0	0	0
ZNF628	89887	hgsc.bcm.edu	37	19	55993260	55993260	+	Missense_Mutation	SNP	A	A	G	rs34864744		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ZNF628-22	NM_033113	exon3	c.A700G	p.T234A	CCGGGTACCGCCT	.	6	6	0	0	A|0.270;G|0.730	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	283	35	176	0	G|1.000;|0.000	0	0	0	0	0
C2orf81	388963	broad.mit.edu	37	2	74642280	74642280	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	NM_001145054	exon4	c.A943C	p.T315P	GGCGGGTGGCGCC	.	90	36	22	3	.	0	0	0	0	0
DNAH6	1768	broad.mit.edu;bcgsc.ca	37	2	84945469	84945469	+	Silent	SNP	G	G	A	rs1192344	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DNAH6-69	NM_001370	exon59	c.G9753A	p.L3251L	TATTCTGGACAAT	.	58	5	85	0	G|0.933;A|0.067	1	1	0	0	0
MIR663B	100313824	bcgsc.ca	37	2	133014602	133014602	+	RNA	SNP	G	G	C	rs75245503	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	.	.	.	.	CAGACAGGAGGGA	.	110	35	31	2	G|0.500;C|0.500	0	0	0	0	0
MIR663B	100313824	bcgsc.ca	37	2	133014612	133014612	+	RNA	SNP	A	A	C	rs74853538	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	.	.	.	.	GGAGGTACCGCAG	.	123	43	35	3	A|0.333;C|0.667	0	0	0	0	0
ANKRD44	91526	bcgsc.ca	37	2	198001319	198001319	+	Silent	SNP	A	A	G	rs3731569	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ANKRD44-230	NM_153697	exon4	c.T258C	p.S86S	CACTTCACTTCTG	.	51	5	68	0	A|0.672;G|0.328	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TCF15-90	NM_004609	exon1	c.T426C	p.R142R	CGCGGCACGGAAG	.	8	8	0	0	A|0.165;G|0.835	0	0	0	0	0
CHGB	1114	bcgsc.ca	37	20	5903388	5903388	+	Missense_Mutation	SNP	A	A	C	rs881118	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CHGB-96	NM_001819	exon4	c.A598C	p.N200H	TTTCTCAATGAAA	.	140	6	122	0	A|0.887;C|0.113	102	102	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	.	.	.	.	TCTCCTGCTTAGA	.	38	3	47	1	G|0.994;C|0.006	0	0	0	0	0
SLC32A1	140679	bcgsc.ca	37	20	37356245	37356245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SLC32A1-90	NM_080552	exon2	c.C541T	p.R181C	GTGGTGCGCGTGC	.	138	65	37	1	.	0	0	0	0	0
COL9A3	1299	bcgsc.ca	37	20	61463522	61463522	+	Missense_Mutation	SNP	C	C	A	rs751557	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	COL9A3-514	NM_001853	exon25	c.C1304A	p.A435E	GTGCCGCAGGCCC	.	360	11	184	1	T|0.059;G|0.214	0	0	0	0	0
MIR124-3	406909	broad.mit.edu	37	20	61809858	61809858	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	.	.	.	.	.	TGAGGGCCCCTCT	.	91	5	22	1	.	0	0	0	0	0
LIME1	54923	hgsc.bcm.edu	37	20	62369658	62369658	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	LIME1-44	NM_017806	exon5	c.G391T	p.A131S	CTGCCGGCAGCTG	.	43	23	3	0	.	11	8	3	0	0
NEFH	4744	ucsc.edu	37	22	29885567	29885567	+	Silent	SNP	A	A	C	rs75808076		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NEFH-90	NM_021076	exon4	c.A1938C	p.A646A	GGAAGCAAAGTCC	.	150	32	127	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	CTGAGAAGGCCAA	.	175	80	197	0	.	0	0	0	0	0
EP300	2033	bcgsc.ca	37	22	41551039	41551039	+	Silent	SNP	T	T	A	rs20552	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	EP300-2011	NM_001429	exon17	c.T3183A	p.T1061T	GCCAACTTTGGAG	.	50	4	79	0	T|0.375;A|0.625	11	11	0	0	0
IL17RE	132014	bcgsc.ca	37	3	9956279	9956279	+	Missense_Mutation	SNP	G	G	A	rs455863	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	IL17RE-90	NM_001193380	exon14	c.G1417A	p.G473R	GTGTCCGGATGGT	.	101	5	108	0	A|0.424;C|0.006	0	0	0	0	0
ACVR2B	93	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	38519421	38519421	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ACVR2B-942	NM_001106	exon3	c.C330T	p.N110N	CTGCAACGAACGC	.	215	175	225	0	.	1	0	1	0	0
KIF15	56992	broad.mit.edu;bcgsc.ca	37	3	44856506	44856506	+	Missense_Mutation	SNP	G	G	C	rs34058914	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIF15-91	NM_020242	exon20	c.G2487C	p.E829D	TCAGGAGAAAGAA	.	60	5	80	0	G|0.998;C|0.002	1	1	0	0	0
OR5H2	79310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98001912	98001912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	OR5H2-71	NM_001005482	exon1	c.C181A	p.H61N	CAACTTCACATCC	.	162	120	181	0	.	0	0	0	0	0
MYH15	22989	bcgsc.ca	37	3	108188993	108188993	+	Missense_Mutation	SNP	G	G	A	rs9868484	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MYH15-73	NM_014981	exon15	c.C1510T	p.H504Y	ACATGTGCCAATT	.	171	8	193	2	G|0.424;A|0.576	0	0	0	0	0
TMEM108	66000	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133098806	133098806	+	Missense_Mutation	SNP	C	C	T	rs34111099	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TMEM108-94	NM_023943	exon4	c.C251T	p.P84L	CAACACCGACACC	.	175	128	166	0	C|0.953;T|0.047	3	0	3	0	0
DBR1	51163	broad.mit.edu	37	3	137880741	137880743	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DBR1-90	NM_016216	exon8	c.1623_1625del	p.541_542del	GCTGCATCGTCAT	.	251	16	291	0	.	0	0	0	0	0
SKIL	6498	bcgsc.ca	37	3	170078232	170078232	+	Missense_Mutation	SNP	C	C	T	rs3772173	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SKIL-228	NM_001248008	exon1	c.C113T	p.A38V	TTCATGCAAATGG	.	210	8	262	2	C|0.286;T|0.714	12	12	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195594805	195594805	+	Silent	SNP	A	A	G	rs1056749	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TNK2-957	NM_001010938	exon13	c.T2553C	p.A851A	AGGGGAAGCAGGT	.	5	5	1	0	A|0.886;G|0.114	5	0	5	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389070	1389070	+	Silent	SNP	A	A	G	rs151096093	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	CRIPAK-90	NM_175918	exon1	c.A771G	p.G257G	ATGTGGAGTGCCC	.	76	27	2	0	A|0.981;G|0.019	5	2	3	0	0
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	57181586	57181586	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIAA1211-70	NM_020722	exon8	c.C1918T	p.R640X	CCTCCCCGAGGCC	.	80	42	12	0	.	0	0	0	0	0
TKTL2	84076	broad.mit.edu;bcgsc.ca	37	4	164393463	164393463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TKTL2-95	NM_032136	exon1	c.G1424A	p.R475Q	CTGGTTCGAATGA	.	111	44	69	2	.	0	0	0	0	0
KIF3A	11127	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132069983	132069983	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KIF3A-91	NM_007054	exon2	c.C194A	p.T65N	AAAACAGTATCAA	.	279	74	159	2	.	20	16	4	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	5	4	0	0	G|0.585;C|0.415	0	0	0	0	0
ZNF879	345462	broad.mit.edu;bcgsc.ca	37	5	178459426	178459426	+	Missense_Mutation	SNP	A	A	C	rs17078991	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ZNF879-47	NM_001136116	exon5	c.A477C	p.E159D	TGTTGAATTTGGG	.	161	7	116	0	A|0.634;C|0.365	1	1	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	5	5	0	0	A|0.006;G|0.994	4	0	4	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762843	+	Missense_Mutation	SNP	G	G	C	rs67600122	alternate_allele	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	VARS-93	NM_006295	exon2	c.C152G	p.P51R	GGAAAGGGAGTCC	.	8	4	2	0	CT|0.500;GG|0.500	4	4	0	0	0
C6orf222	389384	broad.mit.edu;bcgsc.ca	37	6	36298316	36298316	+	Missense_Mutation	SNP	G	G	A	rs74561471	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C6orf222-93	NM_001010903	exon2	c.C152T	p.T51M	CTGGTCGTCCAGT	.	88	6	35	0	G|0.998;A|0.002	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	21	21	0	0	T|0.441;C|0.559	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	6	6	0	0	C|0.673;A|0.327	19	0	19	0	0
NDUFAF4	29078	bcgsc.ca	37	6	97339126	97339126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NDUFAF4-91	NM_014165	exon3	c.C382A	p.L128I	GGAAAAGCTTATG	.	57	5	43	0	.	146	146	0	0	0
TFB1M	51106	bcgsc.ca	37	6	155606325	155606325	+	Silent	SNP	C	C	T	rs324356	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TFB1M-91	NM_016020	exon5	c.G633A	p.T211T	TGGAATCGTAAAG	.	296	8	148	1	C|0.338;T|0.662	30	30	0	0	0
PRPS1L1	221823	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	18066907	18066907	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PRPS1L1-1	NM_175886	exon1	c.A499T	p.I167F	AGACAATAATGCA	.	260	86	166	1	.	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	43	12	7	0	.	0	0	0	0	0
NPC1L1	29881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44560705	44560705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NPC1L1-94	NM_001101648	exon13	c.G2966C	p.C989S	TTTAGGCAGTTCA	.	121	51	71	0	.	1	1	0	0	0
C7orf72	100130988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50136067	50136067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	C7orf72-23	NM_001161834	exon1	c.C386T	p.T129I	TACCAACCCTAGT	.	194	98	117	0	.	0	0	0	0	0
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91646396	91646396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AKAP9-755	NM_005751	exon12	c.C3817A	p.L1273I	TTGGTACTTCAAA	.	237	78	155	0	.	8	4	4	0	0
GPR37	2861	bcgsc.ca	37	7	124386757	124386757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	GPR37-523	NM_005302	exon2	c.C1664T	p.P555L	CTGAAGGGTTTGC	.	182	53	157	4	.	0	0	0	0	0
R3HCC1	203069	broad.mit.edu;ucsc.edu	37	8	23150878	23150878	+	Missense_Mutation	SNP	T	T	G	rs13530	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	R3HCC1-69	NM_001136108	exon6	c.T527G	p.L176R	CCTGCCTGGCCTC	.	60	6	58	1	T|0.004;G|0.007	2	2	0	0	0
NSMAF	8439	hgsc.bcm.edu	37	8	59571856	59571856	+	Missense_Mutation	SNP	A	A	C	rs59606339	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NSMAF-91	NM_001144772	exon1	c.T50G	p.I17S	TGCCGGATAGCTC	.	13	13	4	0	A|0.754;C|0.246	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	27	27	0	0	G|0.572;C|0.428	5	0	5	0	0
KDM4C	23081	bcgsc.ca	37	9	7046901	7046901	+	Missense_Mutation	SNP	C	C	G	rs1407856	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	KDM4C-228	NM_001146696	exon16	c.C2365G	p.Q789E	CTTAAGCAAACGA	.	138	5	102	0	C|0.685;G|0.315	17	17	0	0	0
AKAP2	11217	hgsc.bcm.edu	37	9	112811038	112811038	+	Missense_Mutation	SNP	C	C	T	rs78923754	byfrequency	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	AKAP2-24	NM_001004065	exon1	c.C59T	p.P20L	GACCCCCGGAGTC	.	20	19	0	0	C|0.917;T|0.083	1	0	1	0	0
DBC1	1620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	121929775	121929775	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	DBC1-582	NM_014618	exon8	c.C1873A	p.L625I	TAGGTAGCCGAGT	.	346	294	257	1	.	1	0	1	0	0
PCDH11X	27328	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	91132451	91132451	+	Silent	SNP	C	C	A	rs2563383	alternate_allele	TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	PCDH11X-193	NM_001168363	exon2	c.C1212A	p.I404I	TGAAATCCCTTTC	.	272	242	243	2	T|1.000;|0.000	0	0	0	0	0
NF1	4763	hgsc.bcm.edu;bcgsc.ca	37	17	29654828	29654829	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	NF1-3353	NM_001042492	exon38	c.5580_5581insA	p.L1860fs	ATTACTTAATTTA	.	55	40	97	1	.	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	rs201732168		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	TBP-91	NM_003194	exon3	c.189_190insCAG	p.Q63delinsQQ	ACAACAACAGCAG	.	115	68	61	0	-|0.138;CAG|0.862	0	0	0	0	0
MLLT3	4300	broad.mit.edu	37	9	20414344	20414345	+	In_Frame_Ins	INS	-	-	TGC	novel		TCGA-OR-A5JW-01A-11D-A29I-10	TCGA-OR-A5JW-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	0004802d-73d9-45fd-a460-ea223da20491	b2629be2-b6b9-414c-a7d1-e0103b395590	.	MLLT3-660	NM_004529	exon5	c.500_501insGCA	p.S167delinsSS	CTGCTACTGCTGC	.	39	9	20	0	.	0	0	0	0	0