Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	HES3-514	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	11	11	1	0	C|0.430;A|0.570	0	0	0	0	0
HES3	390992	hgsc.bcm.edu	37	1	6305303	6305303	+	Silent	SNP	C	C	A	rs61760837		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	HES3-514	NM_001024598	exon4	c.C297A	p.A99A	GAGCGCCGCCGGC	.	9	9	1	0	C|0.438;A|0.562	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	rs6693400		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	NOL9-515	NM_024654	exon1	c.T148C	p.W50R	ACCGCCACCGTAG	.	10	10	0	0	A|0.020;G|0.980	0	0	0	0	0
RPS6KA1	6195	hgsc.bcm.edu	37	1	26856462	26856462	+	Silent	SNP	T	T	G	rs11800553	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	RPS6KA1-510	NM_002953	exon1	c.T51G	p.P17P	AGTGCCTCTGGAC	.	6	6	0	0	T|0.065;G|0.935	0	0	0	0	0
RIMKLA	284716	bcgsc.ca	37	1	42880516	42880516	+	Silent	SNP	T	T	C	rs1055055	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	RIMKLA-90	NM_173642	exon5	c.T1047C	p.S349S	CTCTAGTGAAAGT	.	134	6	184	1	T|0.444;C|0.556	4	4	0	0	0
C1orf228	339541	broad.mit.edu	37	1	45166683	45166683	+	Silent	SNP	C	C	T	rs76132381	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001145636	exon5	c.C531T	p.H177H	GGTCCACGGCAAT	.	150	5	226	2	C|0.993;T|0.007	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271912	45271912	+	Silent	SNP	G	G	A	rs17886118	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TCTEX1D4-91	NM_001013632	exon2	c.C429T	p.D143D	GGCCTCGTCGCTG	.	4	4	0	0	G|0.822;A|0.178	1	0	1	0	0
JAK1	3716	bcgsc.ca	37	1	65311262	65311262	+	Silent	SNP	G	G	A	rs2230587	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	JAK1-3900	NM_002227	exon15	c.C2049T	p.S683S	GACATCGCTTTTC	.	98	6	133	2	G|0.823;A|0.177	2	2	0	0	0
LRRC40	55631	bcgsc.ca	37	1	70625071	70625071	+	Missense_Mutation	SNP	G	G	A	rs145682711	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	LRRC40-91	NM_017768	exon10	c.C1162T	p.P388S	CACTTGGTAGTGT	.	157	6	276	0	G|0.998;A|0.002	2	2	0	0	0
GLMN	11146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92712112	92712112	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GLMN-227	NM_053274	exon19	c.C1760G	p.S587C	TCTTCAGAGGTAG	.	66	64	102	0	.	7	0	7	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145474799	145474799	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ANKRD34A-68	NM_001039888	exon4	c.C1471A	p.P491T	GGTGGGCCTGGGG	.	83	4	76	2	.	2	2	0	0	0
SLC27A3	11000	hgsc.bcm.edu	37	1	153748355	153748355	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC27A3-91	NM_024330	exon1	c.G523T	p.G175X	AGCGCTGGAGAAG	.	60	4	9	0	.	1	1	0	0	0
DNAH14	127602	broad.mit.edu	37	1	225533684	225533684	+	Missense_Mutation	SNP	A	A	G	rs6667999	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	DNAH14-23	NM_001373	exon68	c.A10420G	p.K3474E	GATGACAAAATTG	.	109	5	162	0	A|0.507;G|0.493	0	0	0	0	0
H3F3A	3020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226252155	226252155	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	H3F3A-522	NM_002107	exon2	c.G103C	p.G35R	ACTGGAGGGGTGA	.	269	246	282	0	.	434	14	418	0	2
IBA57	200205	hgsc.bcm.edu	37	1	228353651	228353651	+	Missense_Mutation	SNP	G	G	C	rs55873785		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	IBA57-90	NM_001010867	exon1	c.G134C	p.G45A	CGGCCGGAGCGGC	.	5	5	0	0	G|0.656;C|0.344	0	0	0	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240371484	240371484	+	Silent	SNP	A	A	T	rs202006855	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FMN2-145	NM_020066	exon5	c.A3372T	p.L1124L	CCCTCTACCCGGA	.	19	9	7	0	A|0.975;T|0.026	0	0	0	0	0
PROSER2	254427	hgsc.bcm.edu	37	10	11912228	11912228	+	Silent	SNP	G	G	A	rs74657303	byfrequency;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_153256	exon4	c.G1131A	p.T377T	CAGCACGCGGGCC	.	10	8	0	0	G|0.923;A|0.077	0	0	0	0	0
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	91518639	91518642	+	Frame_Shift_Del	DEL	AGTC	AGTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGTC	AGTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KIF20B-93	NM_016195	exon27	c.4560_4560del	p.1520_1520del	TAAAATAGTCAGT	.	110	47	126	0	.	0	0	0	0	0
FBXW4	6468	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103371096	103371097	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FBXW4-226	NM_022039	exon9	c.1190_1191del	p.397_397del	GGCAGCATAGAGA	.	280	133	199	0	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	13	13	0	0	A|0.009;G|0.991	2	0	2	0	0
WDR11	55717	broad.mit.edu	37	10	122664295	122664295	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	WDR11-226	NM_018117	exon25	c.G3165A	p.T1055T	GGCAACGAATATG	.	218	6	173	0	.	30	30	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	8	8	0	0	C|0.748;A|0.252	0	0	0	0	0
NUDT22	84304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	63994397	63994397	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	NUDT22-90	NM_001128613	exon2	c.G273A	p.L91L	CTTCCTGGGCACC	.	79	46	62	0	.	40	17	23	0	0
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	65314984	65314984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	LTBP3-91	NM_001130144	exon14	c.A2033T	p.N678I	GGAAAGTTGATGC	.	107	47	95	0	.	33	25	8	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	6	6	0	0	C|0.233;T|0.767	0	0	0	0	0
CD248	57124	hgsc.bcm.edu	37	11	66084284	66084284	+	Missense_Mutation	SNP	C	C	T	rs111751859		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CD248-154	NM_020404	exon1	c.G215A	p.S72N	ACCAGGCTGTCCA	.	14	6	0	0	C|0.994;T|0.006	0	0	0	0	0
SHANK2	22941	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	70544812	70544812	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SHANK2-94	.	.	.	.	AGCTGTCATAGGA	.	188	80	160	0	.	0	0	0	0	0
SYTL2	54843	bcgsc.ca	37	11	85445593	85445593	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SYTL2-137	NM_001162953	exon6	c.G779A	p.R260K	TCTGTCCTTTGTC	.	68	10	122	0	.	4	4	0	0	0
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	117335893	117335893	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	DSCAML1-159	NM_020693	exon17	c.C3210A	p.P1070P	CTTCTTGGGTGCC	.	65	4	77	0	.	0	0	0	0	0
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121028854	121028854	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TECTA-225	NM_005422	exon13	c.C4610T	p.P1537L	CGGCCCCCAACCT	.	75	65	112	0	.	0	0	0	0	0
IQSEC3	440073	hgsc.bcm.edu	37	12	248155	248155	+	Silent	SNP	C	C	T	rs55923022		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	IQSEC3-560	NM_001170738	exon4	c.C1626T	p.A542A	CCCCGCCGTGGGC	.	16	9	0	0	C|0.880;T|0.120	0	0	0	0	0
MANSC1	54682	broad.mit.edu	37	12	12483162	12483162	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MANSC1-90	NM_018050	exon4	c.C1095A	p.G365G	GGAACTGCCTGGA	.	104	3	121	0	.	8	8	0	0	0
BIN2	51411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51685869	51685869	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	BIN2-91	NM_016293	exon10	c.A1021T	p.N341Y	GGCCATTGCAGGC	.	76	38	69	0	.	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KRT4-96	NM_002272	exon1	c.T240C	p.F80F	AGTGCCAAAGCCT	.	50	10	50	0	A|1.000;|0.000	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KRT4-96	NM_002272	exon1	c.C237T	p.G79G	GCCAAAGCCTCCA	.	51	9	52	0	.	0	0	0	0	0
METTL7B	196410	bcgsc.ca	37	12	56077740	56077740	+	Silent	SNP	C	C	T	rs11615467	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	METTL7B-514	NM_152637	exon2	c.C642T	p.N214N	TGAGAACGCCCAG	.	187	6	148	1	C|0.959;T|0.041	1	1	0	0	0
SUOX	6821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56398081	56398081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SUOX-90	NM_000456	exon6	c.C908A	p.A303D	TGTTAGCCCAGGC	.	106	45	86	0	.	14	8	6	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	19	11	0	0	A|0.273;G|0.727	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	27	18	1	0	C|0.752;T|0.248	1	1	0	0	0
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	112690349	112690349	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001109662	exon23	c.3029delC	p.P1010fs	AAGGAAGGGGGGG	.	33	14	24	0	.	0	0	0	0	0
PDS5B	23047	bcgsc.ca	37	13	33232435	33232435	+	Silent	SNP	A	A	G	rs2301393	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PDS5B-94	NM_015032	exon4	c.A372G	p.Q124Q	CCCACAATTCAAT	.	73	4	139	0	A|0.686;G|0.314	0	0	0	0	0
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	77745686	77745689	+	Frame_Shift_Del	DEL	ACAG	ACAG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	ACAG	ACAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MYCBP2-236	NM_015057	exon38	c.5732_5735del	p.1911_1912del	CTTACAACAGACA	.	102	43	109	0	.	0	0	0	0	0
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	98658494	98658494	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	IPO5-228	NM_002271	exon17	c.A1662G	p.P554P	TATGCCATCACTG	.	87	41	77	0	.	25	13	12	0	0
OR4Q3	441669	hgsc.bcm.edu	37	14	20215780	20215780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	OR4Q3-71	NM_172194	exon1	c.G194T	p.G65V	TTTTAGGTCATCT	.	65	4	54	0	.	0	0	0	0	0
CTAGE5	4253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	39771394	39771394	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CTAGE5-90	NM_001247989	exon10	c.C872G	p.T291R	ACATAACGGATGA	.	273	123	207	0	.	23	15	8	0	0
ARID4A	5926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	58833675	58833676	+	Frame_Shift_Del	DEL	TA	TA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TA	TA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ARID4A-231	NM_002892	exon23	c.3598_3599del	p.1200_1200del	AAATATTATATGT	.	113	65	135	0	.	0	0	0	0	0
SAMD15	161394	broad.mit.edu	37	14	77844127	77844127	+	Silent	SNP	G	G	A	rs61990322	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SAMD15-90	NM_001010860	exon1	c.G366A	p.L122L	AGATTTGGAGGCC	.	71	4	67	0	G|0.998;A|0.002	0	0	0	0	0
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	86089505	86089505	+	Silent	SNP	C	C	A	rs35699071	alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FLRT2-94	NM_013231	exon2	c.C1647A	p.G549G	CGGGGGCGCGGTG	.	123	56	98	0	C|0.983;T|0.017	0	0	0	0	0
IFI27L2	83982	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	94594238	94594240	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	IFI27L2-90	NM_032036	exon4	c.289_291del	p.97_97del	TGGGAGAGAAGAA	.	133	44	114	0	.	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	11	6	4	0	T|0.603;C|0.397	0	0	0	0	0
SNRPN	6638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	25222108	25222108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SNRPN-469	NM_022807	exon10	c.G352T	p.V118L	GCTGGTGTGCCAA	.	43	18	41	0	.	212	212	0	0	0
ELL3	80237	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	44069077	44069078	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ELL3-91	NM_025165	exon1	c.22_23del	p.8_8del	CCTCTCAGAGGCT	.	59	31	43	0	.	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051846	79051846	+	Missense_Mutation	SNP	T	T	C	rs199524707		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ADAMTS7-226	NM_014272	exon24	c.A4978G	p.I1660V	TGCGGATGGTGGG	.	107	14	21	0	.	10	10	0	0	0
ZNF592	9640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	85326912	85326912	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF592-96	NM_014630	exon4	c.C1006G	p.L336V	AGCCCTCTGGAGG	.	107	56	70	0	.	1	0	1	0	0
MAN2A2	4122	bcgsc.ca	37	15	91452595	91452595	+	Missense_Mutation	SNP	A	A	G	rs2106673	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MAN2A2-136	NM_006122	exon8	c.A1235G	p.Q412R	AGTCCCAGCTGTT	.	135	5	140	0	A|0.596;G|0.404	9	9	0	0	0
ARRDC4	91947	hgsc.bcm.edu	37	15	98504326	98504326	+	Missense_Mutation	SNP	A	A	G	rs12101554	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ARRDC4-90	NM_183376	exon1	c.A235G	p.T79A	GCCAGCACCGCGG	.	7	7	0	0	A|0.263;G|0.737	0	0	0	0	0
CCDC154	645811	broad.mit.edu	37	16	1486505	1486505	+	Silent	SNP	G	G	A	rs184119365	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001143980	exon13	c.C1428T	p.D476D	GCACTTGTCGGAG	.	86	3	70	0	G|0.996;A|0.004	1	1	0	0	0
AMDHD2	51005	hgsc.bcm.edu;bcgsc.ca	37	16	2571079	2571081	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	CTT	CTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	AMDHD2-155	NM_001145815	exon3	c.315_317del	p.105_106del	CACCTCCTTCTGC	.	188	81	202	1	.	0	0	0	0	0
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23706392	23706392	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ERN2-322	NM_033266	exon16	c.C1992G	p.V664V	CAGCACGACCTCG	.	169	75	117	0	.	0	0	0	0	0
ZNF688	146542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30582444	30582444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF688-68	NM_145271	exon2	c.G197A	p.G66E	GGGAATCCTGGGA	.	21	7	22	0	.	11	9	2	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	4	4	0	0	T|0.035;G|0.004	0	0	0	0	0
CTCF	10664	broad.mit.edu;bcgsc.ca	37	16	67654677	67654677	+	Silent	SNP	C	C	T	rs143837268	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CTCF-91	NM_006565	exon6	c.C1164T	p.S388S	TGCCAGCAGGGAC	.	149	6	217	1	C|0.988;T|0.012	7	7	0	0	0
MBTPS1	8720	bcgsc.ca	37	16	84115393	84115393	+	Silent	SNP	G	G	A	rs12933523	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MBTPS1-92	NM_003791	exon11	c.C1407T	p.L469L	GGCTCTGAGCAGA	.	7	4	81	0	G|0.869;A|0.131	0	0	0	0	0
CRISPLD2	83716	broad.mit.edu	37	16	84883096	84883096	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CRISPLD2-90	NM_031476	exon4	c.G465T	p.S155S	GTGCTCGGGGCCC	.	100	4	123	0	.	0	0	0	0	0
ACSF3	197322	ucsc.edu;bcgsc.ca	37	16	89167094	89167094	+	Missense_Mutation	SNP	T	T	C	rs7188200	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ACSF3-68	NM_174917	exon3	c.T5C	p.L2P	CAATGCTGCCCCA	.	23	20	21	0	T|0.381;C|0.619	6	0	6	0	0
HIC1	3090	hgsc.bcm.edu	37	17	1960974	1960974	+	Silent	SNP	C	C	T	rs77393586		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	HIC1-135	NM_001098202	exon2	c.C1047T	p.R349R	GGAGCGCGGCTCC	.	14	7	0	0	C|0.839;T|0.161	0	0	0	0	0
OR3A1	4994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3195043	3195043	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	OR3A1-70	NM_002550	exon1	c.A834T	p.G278G	GAAAATTCCAACA	.	156	59	138	0	.	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693342	4693342	+	Missense_Mutation	SNP	C	C	A	rs35910358		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GLTPD2-68	NM_001014985	exon4	c.C627A	p.D209E	CCCGGACGCGGGC	.	17	17	0	0	C|0.015;A|0.985	0	0	0	0	0
GLTPD2	388323	hgsc.bcm.edu	37	17	4693384	4693384	+	Silent	SNP	T	T	C	rs150754782		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GLTPD2-68	NM_001014985	exon4	c.T669C	p.G223G	CCTGGGTCCGCAT	.	28	10	1	0	T|0.978;C|0.022	0	0	0	0	0
CNTROB	116840	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7842968	7842970	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CNTROB-153	NM_001037144	exon8	c.1065_1067del	p.355_356del	TGCCCTAGAAGAA	.	204	104	157	0	.	0	0	0	0	0
RNF222	643904	hgsc.bcm.edu	37	17	8296383	8296383	+	Missense_Mutation	SNP	C	C	T	rs12601362	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	RNF222-68	NM_001146684	exon3	c.G397A	p.A133T	GCTGGGCGCTCTG	.	20	6	1	0	C|0.808;T|0.192	0	0	0	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ARHGAP23-205	NM_001199417	exon24	c.T3819C	p.D1273D	GGGGGATGAGGCG	.	11	7	0	0	C|0.823;G|0.000;T|0.177	2	2	0	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001130677	exon1	c.C187G	p.L63V	CCGCCAGCTCCCC	.	14	9	1	0	G|0.824;C|0.176	0	0	0	0	0
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40342700	40342700	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GHDC-90	NM_001142623	exon8	c.G1230A	p.V410V	CTGCCCCACTGCC	.	99	47	79	0	.	38	16	22	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254281	42254281	+	Missense_Mutation	SNP	A	A	G	rs7212573	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ASB16-227	NM_080863	exon3	c.A745G	p.T249A	CTGAACACGGCGT	.	23	9	0	0	A|0.476;G|0.524	0	0	0	0	0
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	17	48638951	48638951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CACNA1G-67	NM_001256360	exon1	c.C131T	p.A44V	GCAGCGCGGACTC	.	37	18	20	0	.	0	0	0	0	0
AKAP1	8165	broad.mit.edu	37	17	55183402	55183402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	AKAP1-227	NM_001242902	exon3	c.G577A	p.G193R	AGCTCTGGGGAGA	.	26	3	27	0	.	4	4	0	0	0
FAM20A	54757	hgsc.bcm.edu	37	17	66596769	66596769	+	Silent	SNP	C	C	T	rs2907388		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FAM20A-90	NM_017565	exon1	c.G39A	p.L13L	CAGCAGCAGCAGA	.	26	12	4	0	C|0.943;T|0.057	0	0	0	0	0
GAREM	64762	hgsc.bcm.edu	37	18	29868135	29868161	+	In_Frame_Del	DEL	TCAGTGTCTTCATTGCATTCACCTGAA	TCAGTGTCTTCATTGCATTCACCTGAA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TCAGTGTCTTCATTGCATTCACCTGAA	TCAGTGTCTTCATTGCATTCACCTGAA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_022751	exon4	c.399_425del	p.133_142del	TAAACTTCAGTGT	.	52	15	63	0	.	0	0	0	0	0
MEX3C	51320	hgsc.bcm.edu	37	18	48723146	48723154	+	In_Frame_Del	DEL	GCCGCCGCG	GCCGCCGCG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GCCGCCGCG	GCCGCCGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MEX3C-659	NM_016626	exon1	c.537_545del	p.179_182del	GCCGCCGCCGCCG	.	34	13	0	0	.	0	0	0	0	0
ATP8B1	5205	broad.mit.edu	37	18	55342160	55342160	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ATP8B1-587	NM_005603	exon16	c.C1725A	p.N575K	GATGGTGTTCTGG	.	113	5	94	0	.	19	19	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	6	6	0	0	C|0.780;G|0.220	0	0	0	0	0
LPPR3	0	hgsc.bcm.edu	37	19	813220	813220	+	Missense_Mutation	SNP	T	T	C	rs351994		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_024888	exon7	c.A1591G	p.T531A	CCCCCGTCTGCGC	.	8	7	1	0	T|0.751;C|0.249	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	5	5	0	0	T|0.495;C|0.504	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	14	14	0	0	A|0.114;G|0.886	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	964309	964309	+	Nonsense_Mutation	SNP	C	C	A	rs143790786	byfrequency;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ARID3A-90	NM_005224	exon5	c.C828A	p.Y276X	GCTGTACGTGCTG	.	339	108	178	0	C|0.999;T|0.001	4	3	1	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1003441	1003441	+	Missense_Mutation	SNP	C	C	T	rs143106549		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GRIN3B-90	NM_138690	exon2	c.C739T	p.R247W	GCCCGTCGGGTGC	.	80	57	4	0	C|0.999;T|0.000	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1009485	1009485	+	Missense_Mutation	SNP	C	C	G	rs10401245	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GRIN3B-90	NM_138690	exon9	c.C3016G	p.Q1006E	CGCGGCCAGCTCC	.	9	9	0	0	C|0.474;G|0.526	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	25	10	0	0	T|0.403;C|0.597	11	3	8	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KLF16-90	NM_031918	exon2	c.T660C	p.P220P	GGCACCAGGGCGC	.	20	19	0	0	A|0.591;G|0.409	6	0	6	0	0
DOHH	83475	hgsc.bcm.edu	37	19	3492318	3492318	+	Silent	SNP	G	G	C	rs78287632	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	DOHH-90	NM_001145165	exon4	c.C531G	p.R177R	CATGGCGCGGTAT	.	64	42	0	0	G|0.979;C|0.021	9	5	4	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217956	4217956	+	Silent	SNP	A	A	G	rs6510794	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ANKRD24-68	NM_133475	exon18	c.A2799G	p.A933A	CCGGGCAGCCAGT	.	14	14	0	0	A|0.541;G|0.459	0	0	0	0	0
EMR1	2015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6906459	6906459	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EMR1-526	NM_001256253	exon9	c.G965T	p.C322F	TCAAATGTAAGGA	.	281	19	152	0	.	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399628	8399628	+	Silent	SNP	A	A	G	rs710949	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KANK3-90	NM_198471	exon3	c.T1083C	p.S361S	CTCCAGACTGGCG	.	6	6	0	0	A|0.411;G|0.589	0	0	0	0	0
OR10H2	26538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15839027	15839027	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	OR10H2-70	NM_013939	exon1	c.C174T	p.P58P	CACGCCCATGTAC	.	775	250	329	1	.	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	UQCRFS1-226	NM_006003	exon1	c.A24G	p.S8S	CGGGCCTGAGCGG	.	4	4	0	0	T|0.072;C|0.928	0	0	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	UQCRFS1-226	NM_006003	exon1	c.T16G	p.S6A	AGCGGGATGCTAC	.	4	4	0	0	A|0.065;C|0.935	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183352	33183352	+	Silent	SNP	G	G	C	rs61732600	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	NUDT19-22	NM_001105570	exon1	c.G486C	p.P162P	ACCGCCGGGCCTG	.	21	20	0	0	G|0.743;C|0.257	0	0	0	0	0
SLC7A9	11136	bcgsc.ca	37	19	33355553	33355553	+	Missense_Mutation	SNP	C	C	T	rs138156402		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC7A9-91	NM_001243036	exon3	c.G217A	p.G73R	GGACCCCGCAAGC	.	121	51	97	2	C|1.000;T|0.000	0	0	0	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876474	38876474	+	Silent	SNP	C	C	T	rs183192050	by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GGN-90	NM_152657	exon3	c.G1428A	p.L476L	GGGAGCCAGGGCT	.	12	6	0	0	C|0.980;T|0.020	0	0	0	0	0
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46914646	46914646	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CCDC8-93	NM_032040	exon1	c.G1422A	p.Q474Q	CTTGACCTGTTTC	.	95	48	96	0	.	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	12	9	2	0	G|0.738;A|0.262	5	2	3	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	20	19	0	0	.	0	0	0	0	0
ZNF582	147948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56901430	56901430	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF582-138	NM_144690	exon4	c.C172T	p.L58L	GCTCTAGGAAGGA	.	130	54	114	0	.	4	4	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	15	6	1	0	G|0.301;C|0.699	0	0	0	0	0
HADHB	3032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26502030	26502030	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	HADHB-154	NM_000183	exon9	c.A658T	p.S220C	TCCACCAGTGAGA	.	151	76	96	0	.	241	114	127	0	0
EHD3	30845	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	31489342	31489342	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EHD3-92	NM_014600	exon6	c.C1380A	p.G460G	GGATGGCAAGATC	.	264	111	194	1	.	0	0	0	0	0
PKDCC	91461	hgsc.bcm.edu	37	2	42275726	42275726	+	Silent	SNP	C	C	G	rs11891679	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PKDCC-67	NM_138370	exon1	c.C387G	p.R129R	CCCGCGCCTGGGC	.	5	4	0	0	C|0.762;G|0.238	0	0	0	0	0
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98920228	98920228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	VWA3B-139	NM_144992	exon26	c.C3484A	p.H1162N	TGCTCTCATATAA	.	162	69	107	0	.	0	0	0	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	RNF149-290	NM_173647	exon1	c.A25G	p.S9G	CGACGCTGGCTTC	.	6	6	0	0	T|0.543;C|0.457	0	0	0	0	0
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125521704	125521704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CNTNAP5-524	NM_130773	exon16	c.T2510A	p.F837Y	AAGACTTCATTCG	.	51	21	47	0	.	0	0	0	0	0
SSB	6741	hgsc.bcm.edu;bcgsc.ca	37	2	170667792	170667794	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GTG	GTG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SSB-94	NM_003142	exon11	c.1097_1099del	p.366_367del	TTGCTAGTGATGA	.	111	45	159	0	.	0	0	0	0	0
FZD5	7855	hgsc.bcm.edu	37	2	208632989	208632989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FZD5-660	NM_003468	exon2	c.C475A	p.P159T	TGGGGGGCGCCGT	.	19	8	4	0	.	0	0	0	0	0
SPATA3	130560	broad.mit.edu	37	2	231865144	231865144	+	Missense_Mutation	SNP	G	G	C	rs12105962	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_139073	exon2	c.G365C	p.C122S	CCGCTTGCTGGCG	.	140	4	202	1	G|0.771;C|0.229	0	0	0	0	0
ALPPL2	251	hgsc.bcm.edu	37	2	233274475	233274475	+	Missense_Mutation	SNP	C	C	A	rs56080708	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ALPPL2-91	NM_031313	exon11	c.C1492A	p.R498S	GCGCCCCGCGCCG	.	32	32	0	0	C|0.901;A|0.099	0	0	0	0	0
NDUFA10	4705	broad.mit.edu	37	2	240944641	240944641	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	NDUFA10-514	NM_004544	exon8	c.C876A	p.Y292X	CAGGTGGTATAAA	.	91	4	115	0	.	85	85	0	0	0
ANKMY1	51281	bcgsc.ca	37	2	241463595	241463595	+	Missense_Mutation	SNP	T	T	C	rs35996697	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ANKMY1-90	NM_016552	exon7	c.A1272G	p.I424M	GTGGTCTATGGAC	.	83	7	120	1	T|0.828;C|0.172	3	3	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	4	4	0	0	T|0.454;C|0.546	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	6	6	0	0	G|0.122;C|0.878	0	0	0	0	0
PLK1S1	55857	broad.mit.edu	37	20	21196288	21196288	+	Splice_Site	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001163023	exon7	c.1278+2T>C	.	CACAGGTAAAGCT	.	127	5	246	2	.	0	0	0	0	0
FRG1B	284802	broad.mit.edu;bcgsc.ca	37	20	29628289	29628289	+	RNA	SNP	A	A	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FRG1B-22	.	.	.	.	GGACATAGAAGCA	.	866	32	733	0	.	179	179	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	34	18	2	0	C|0.769;T|0.231	0	0	0	0	0
COL9A3	1299	ucsc.edu;bcgsc.ca	37	20	61472012	61472012	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	COL9A3-514	NM_001853	exon32	c.C1983T	p.I661I	GGGGATCTGCGAC	.	262	114	167	3	.	3	1	2	0	0
KRTAP13-4	284827	bcgsc.ca	37	21	31802768	31802768	+	Missense_Mutation	SNP	G	G	A	rs2226548	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KRTAP13-4-90	NM_181600	exon1	c.G175A	p.A59T	GAGCCCGCCAGCT	.	116	6	110	0	G|0.411;A|0.589	0	0	0	0	0
SLC37A1	54020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43954845	43954845	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC37A1-90	NM_018964	exon5	c.C176G	p.A59G	ATGAAGCTGACGT	.	237	109	232	0	.	6	5	1	0	0
C22orf34	348645	bcgsc.ca;mdanderson.org	37	22	50017837	50017837	+	RNA	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	.	.	.	.	TGGGGAGGGCACA	.	135	74	99	0	.	0	0	0	0	0
PLXNB2	23654	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50720456	50720456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PLXNB2-211	NM_012401	exon20	c.C3172T	p.P1058S	CAGCCGGGGACAG	.	115	48	82	1	.	99	76	23	0	0
CAND2	23066	hgsc.bcm.edu	37	3	12851676	12851676	+	Missense_Mutation	SNP	G	G	A	rs183581869		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CAND2-72	NM_001162499	exon5	c.G610A	p.A204T	CTGGCGGCCGCCT	.	35	19	0	0	G|0.990;A|0.010	0	0	0	0	0
CCR4	1233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	32995848	32995848	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CCR4-658	NM_005508	exon2	c.C934T	p.R312C	AAATTTCGCAAGT	.	26	10	45	0	.	0	0	0	0	0
KIAA1143	57456	ucsc.edu;bcgsc.ca	37	3	44794960	44794960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KIAA1143-90	NM_020696	exon3	c.C338T	p.T113I	CTTGCTGTTAAAC	.	40	4	41	0	.	27	27	0	0	0
MAGI1	9223	bcgsc.ca	37	3	65428493	65428493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MAGI1-661	NM_001033057	exon8	c.C1110A	p.D370E	GACAGGGTCTTCA	.	74	4	99	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	10	10	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	10	10	0	0	G|0.252;C|0.748	0	0	0	0	0
KIAA2018	205717	ucsc.edu	37	3	113376119	113376119	+	Silent	SNP	C	C	T	rs62265538		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KIAA2018-93	NM_001009899	exon7	c.G4410A	p.Q1470Q	CTGCTGCTGCTGC	.	137	14	83	0	C|0.500;T|0.500	87	10	77	0	0
GRAMD1C	54762	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113655144	113655144	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GRAMD1C-93	NM_017577	exon14	c.A1488G	p.L496L	TGTATTAAATCAG	.	57	26	28	0	.	0	0	0	0	0
LRRC58	116064	broad.mit.edu	37	3	120050053	120050055	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001099678	exon4	c.1108_1110del	p.370_370del	TCAACCAAGAAGA	.	214	7	340	0	.	0	0	0	0	0
ILDR1	286676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121712436	121712436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ILDR1-91	NM_001199799	exon7	c.C1160G	p.S387C	GCCCAAGACTTTG	.	78	76	121	0	.	0	0	0	0	0
PARP15	165631	broad.mit.edu;bcgsc.ca	37	3	122296638	122296638	+	Missense_Mutation	SNP	G	G	A	rs1875272	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PARP15-524	NM_001113523	exon1	c.G124A	p.V42M	GGGAGCGTGCTGC	.	83	6	81	0	G|0.744;A|0.256	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122631896	122631896	+	Missense_Mutation	SNP	A	A	T	rs2276782	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SEMA5B-157	NM_001256347	exon18	c.T2681A	p.V894D	AGGAGGACCTCCA	.	11	11	0	0	T|0.412;A|0.588	0	0	0	0	0
CEP70	80321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138219606	138219606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CEP70-69	NM_024491	exon14	c.A1339G	p.M447V	CCAGCATAGTATC	.	51	46	94	0	.	13	0	13	0	0
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	150804785	150804785	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MED12L-576	NM_053002	exon1	c.72delC	p.V24fs	CGACGTCTACCCA	.	59	54	77	0	.	0	0	0	0	0
ADIPOQ	9370	bcgsc.ca	37	3	186570892	186570892	+	Silent	SNP	T	T	G	rs2241766	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ADIPOQ-91	NM_001177800	exon3	c.T45G	p.G15G	GCCCGGTCATGAC	.	135	6	267	2	T|0.885;G|0.115	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	190	13	7	0	T|0.980;C|0.020	9	9	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	148	20	13	0	C|0.960;G|0.040	34	7	27	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388790	1388790	+	Missense_Mutation	SNP	T	T	C	rs79415192		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CRIPAK-90	NM_175918	exon1	c.T491C	p.V164A	CCGACGTGGAGTG	.	126	23	33	0	C|1.000;|0.000	19	13	6	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	163	14	35	0	C|1.000;|0.000	32	26	6	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	100	12	5	0	.	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	8	8	0	0	G|0.794;C|0.206	2	0	2	0	0
CWH43	80157	broad.mit.edu	37	4	49032891	49032891	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CWH43-93	NM_025087	exon11	c.G1422T	p.M474I	CTATATGGGGAAC	.	150	4	110	0	.	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662248	77662248	+	Silent	SNP	G	G	A	rs60216375	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SHROOM3-93	NM_020859	exon5	c.G2922A	p.S974S	GGCGTCGGCCTCC	.	5	4	0	0	G|0.531;A|0.469	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537435	88537435	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	DSPP-90	NM_014208	exon5	c.C3621T	p.S1207S	TGATAGCAGTGAC	.	931	109	725	2	.	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537441	88537441	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	DSPP-90	NM_014208	exon5	c.C3627T	p.D1209D	CAGTGACAGCAGT	.	937	154	740	3	.	0	0	0	0	0
DSPP	1834	ucsc.edu	37	4	88537456	88537456	+	Silent	SNP	C	C	T	rs111240022	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	DSPP-90	NM_014208	exon5	c.C3642T	p.S1214S	CAGCAGCGACAGC	.	932	337	694	2	.	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	5	5	0	0	G|0.022;A|0.978	0	0	0	0	0
ANKRD50	57182	broad.mit.edu	37	4	125600062	125600062	+	Splice_Site	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ANKRD50-90	NM_020337	exon4	c.513-2A>T	.	CACACCTGTAAAA	.	129	3	117	0	.	0	0	0	0	0
FRG1	2483	broad.mit.edu	37	4	190878615	190878615	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FRG1-90	NM_004477	exon6	c.A495T	p.I165I	GGACATAGAAGCA	.	981	23	647	0	.	179	179	0	0	0
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1244384	1244384	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC6A18-91	NM_182632	exon10	c.G1392A	p.G464G	GTCTGGGAACTAC	.	113	49	98	0	.	0	0	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79030793	79030793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CMYA5-77	NM_153610	exon2	c.G6205T	p.V2069F	TCTTCTGTCAAAA	.	82	8	56	0	.	0	0	0	0	0
MEF2C	4208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	88100446	88100446	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MEF2C-704	NM_001193350	exon3	c.A227T	p.H76L	CTCTCATGCGGCT	.	316	23	243	0	.	7	6	1	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109828	98109828	+	Silent	SNP	G	G	A	rs2547973	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001012761	exon3	c.G177A	p.E59E	GGTTGAGCAGCGC	.	6	6	0	0	G|0.735;A|0.265	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	4	4	0	0	T|0.046;G|0.950	0	0	0	0	0
APC	324	hgsc.bcm.edu;bcgsc.ca	37	5	112175676	112175677	+	Frame_Shift_Del	DEL	AG	AG	-	rs121913334	alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	APC-12026	NM_001127510	exon17	c.4385_4386del	p.1462_1462del	CTGAAAAGAGAGA	.	50	43	100	1	.	0	0	0	0	0
CHSY3	337876	hgsc.bcm.edu	37	5	129240972	129240972	+	Silent	SNP	G	G	C	rs33917	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	CHSY3-25	NM_175856	exon1	c.G450C	p.P150P	CCGGCCGGGGAGT	.	6	6	0	0	G|0.479;C|0.521	0	0	0	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307491	140307491	+	Silent	SNP	C	C	T	rs116016831	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PCDHAC1-28	NM_031882	exon1	c.C1014T	p.P338P	TGCCCCCGAACTG	.	377	7	289	0	C|0.992;T|0.008	0	0	0	0	0
PCDHB7	56129	broad.mit.edu	37	5	140553994	140553994	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PCDHB7-95	NM_018940	exon1	c.G1578T	p.A526A	GCAGGCGTTCGAG	.	616	20	173	1	.	1	1	0	0	0
PCDHGA6	56109	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140755561	140755561	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PCDHGA6-67	NM_018919	exon1	c.G1911A	p.A637A	AGACGCGCTCAAG	.	290	130	50	1	.	0	0	0	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	167645355	167645355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001122679	exon23	c.G4432T	p.V1478F	ACTGGGGTCCTCT	.	298	149	199	0	.	0	0	0	0	0
WWC1	23286	bcgsc.ca	37	5	167868779	167868779	+	Silent	SNP	A	A	G	rs3733981	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	WWC1-157	NM_015238	exon16	c.A2373G	p.K791K	GAAGAAACAGAGC	.	492	12	336	4	A|0.525;G|0.475	0	0	0	0	0
CREBRF	153222	hgsc.bcm.edu	37	5	172513606	172513606	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_153607	exon3	c.G112T	p.D38Y	AGTTCGGATCCAG	.	58	4	56	0	.	3	3	0	0	0
NKX2-5	1482	broad.mit.edu	37	5	172659730	172659730	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	NKX2-5-90	NM_004387	exon2	c.G817T	p.A273S	GGTAAGCGGCAGT	.	123	8	63	1	.	4	4	0	0	0
KIAA1191	57179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	175774669	175774672	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	TTTC	TTTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KIAA1191-91	NM_020444	exon9	c.849_852del	p.283_284del	TGGCTGTTTCTTT	.	61	31	48	0	.	0	0	0	0	0
GPRIN1	114787	broad.mit.edu;bcgsc.ca	37	5	176024723	176024723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GPRIN1-92	NM_052899	exon2	c.C2113A	p.P705T	AGGATGGGGACTC	.	68	35	49	1	.	0	0	0	0	0
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	176825193	176825193	+	Missense_Mutation	SNP	C	C	T	rs147711480	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC34A1-91	NM_003052	exon13	c.C1826T	p.P609L	CACCCCCGCTGCC	.	22	13	32	0	C|0.999;T|0.001	0	0	0	0	0
MAK	4117	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	10784764	10784764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MAK-335	NM_005906	exon11	c.G1358A	p.G453E	TTTTCCCCTGTCG	.	134	7	219	0	.	0	0	0	0	0
VARS2	57176	broad.mit.edu	37	6	30888510	30888510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	VARS2-26	NM_001167734	exon15	c.G1553A	p.G518E	AAATGGGGGCCCG	.	89	3	77	0	.	18	18	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	23	13	0	0	T|0.441;C|0.559	0	0	0	0	0
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41652375	41652375	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TFEB-659	NM_001167827	exon9	c.C1435A	p.R479R	TGCTCCGGCGGCT	.	158	79	155	0	.	11	7	4	0	0
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46657547	46657547	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TDRD6-138	NM_001168359	exon1	c.A1682G	p.D561G	AATTGGATGACAA	.	366	168	309	1	.	0	0	0	0	0
KIAA1009	22832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84904675	84904675	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	KIAA1009-91	NM_014895	exon10	c.T954C	p.D318D	CTTGATATCTTCC	.	147	68	107	1	.	0	0	0	0	0
UBE2J1	51465	bcgsc.ca	37	6	90042814	90042814	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	UBE2J1-226	NM_016021	exon7	c.C669A	p.A223A	TGTACTGGCCGTA	.	72	4	58	0	.	0	0	0	0	0
LIN28B	389421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105526424	105526424	+	Silent	SNP	C	C	A	rs140802515	byfrequency;alternate_allele	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	LIN28B-90	NM_001004317	exon4	c.C519A	p.P173P	GCCACCCGCGAGT	.	122	60	75	0	C|0.999;T|0.001	0	0	0	0	0
METTL24	728464	hgsc.bcm.edu	37	6	110679413	110679413	+	Silent	SNP	A	A	G	rs62435951		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	.	NM_001123364	exon1	c.T63C	p.A21A	CAGCACAGCCCCG	.	4	4	0	0	A|0.470;G|0.530	0	0	0	0	0
WDR27	253769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	170033154	170033154	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	WDR27-69	NM_182552	exon21	c.C2112T	p.L704L	AGCTGCGAGTACG	.	91	10	98	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	22	10	3	0	C|0.329;G|0.671	14	5	9	0	0
AEBP1	165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44151812	44151812	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	AEBP1-90	NM_001129	exon17	c.G2109C	p.P703P	TTTCCCGGATCTC	.	60	35	80	0	.	1	1	0	0	0
EGFR	1956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	55224349	55224349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EGFR-44910	NM_005228	exon9	c.G1130A	p.R377K	CATTTAGGGGGTG	.	119	66	110	0	.	0	0	0	0	0
ELN	2006	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73462021	73462021	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ELN-95	NM_001081753	exon13	c.C675G	p.P225P	ACTGCCCTACACC	.	264	118	179	2	.	0	0	0	0	0
C7orf60	154743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	112579732	112579732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	C7orf60-93	NM_152556	exon1	c.G74T	p.R25L	TGCTCCCGGGGCG	.	78	42	66	0	.	0	0	0	0	0
SLC4A2	6522	bcgsc.ca	37	7	150772800	150772800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	SLC4A2-90	NM_003040	exon21	c.G3409T	p.E1137X	TTCTATGAGCGGC	.	47	24	41	2	.	47	40	7	0	0
MCPH1	79648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	6296613	6296613	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MCPH1-229	NM_001172574	exon6	c.C576T	p.P192P	TTCCCCCACCTGT	.	38	25	22	0	.	0	0	0	0	0
MTMR9	66036	broad.mit.edu	37	8	11172527	11172527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MTMR9-226	NM_015458	exon7	c.G1067A	p.R356K	GAAGCAGGACCAT	.	384	8	285	0	.	1	1	0	0	0
INTS9	55756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28654146	28654146	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	INTS9-24	NM_018250	exon9	c.C771T	p.N257N	ATCGCTGTTTTTG	.	167	59	160	0	.	9	4	5	0	0
ANK1	286	broad.mit.edu	37	8	41575158	41575158	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ANK1-716	NM_001142446	exon12	c.C1368A	p.L456L	CTGCAGGAGGTTC	.	137	3	122	0	.	1	1	0	0	0
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100821724	100821724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	VPS13B-301	NM_017890	exon44	c.T8138C	p.I2713T	TCATCATCAAGGT	.	87	34	76	0	.	0	0	0	0	0
GPR20	2843	ucsc.edu	37	8	142367335	142367335	+	Missense_Mutation	SNP	T	T	C	rs10875472	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GPR20-91	NM_005293	exon2	c.A689G	p.H230R	CCCTGGTGGAGCA	.	101	54	20	0	T|0.236;C|0.764	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	14	13	0	0	A|0.118;G|0.882	2	0	2	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940706	144940706	+	Missense_Mutation	SNP	C	C	T	rs112377501	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EPPK1-25	NM_031308	exon1	c.G6716A	p.R2239H	TCCTGGCGGCCGG	.	64	4	21	0	C|0.993;T|0.007	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998948	144998948	+	Missense_Mutation	SNP	G	G	A	rs192022872	by1000genomes	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PLEC-141	NM_201380	exon31	c.C5560T	p.R1854W	GCAGCCGGATCAA	.	9	7	0	0	G|0.999;A|0.001	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	15	7	0	0	C|0.731;T|0.269	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	32	16	3	0	C|0.707;T|0.293	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	15	15	0	0	G|0.992;C|0.006	0	0	0	0	0
RASEF	158158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	85605354	85605354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	RASEF-280	NM_152573	exon16	c.G2069A	p.S690N	TTGGCACTTGTTT	.	160	38	120	0	.	0	0	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	88933891	88933894	+	Frame_Shift_Del	DEL	ATTA	ATTA	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	ATTA	ATTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ZCCHC6-92	NM_024617	exon16	c.3195_3198del	p.1065_1066del	AAGTCCATTAATT	.	258	76	138	0	.	0	0	0	0	0
PRDM12	59335	hgsc.bcm.edu	37	9	133556930	133556930	+	Silent	SNP	C	C	T	rs12004652	byfrequency	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	PRDM12-90	NM_021619	exon5	c.C978T	p.P326P	GCCGCCCAGCACC	.	11	7	0	0	C|0.686;T|0.314	0	0	0	0	0
NUP214	8021	bcgsc.ca	37	9	134019849	134019849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	NUP214-1131	NM_005085	exon12	c.G1477T	p.A493S	TCATCTGCTACGG	.	64	4	63	0	.	0	0	0	0	0
MAGEB2	4113	broad.mit.edu;bcgsc.ca	37	X	30236700	30236700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MAGEB2-131	NM_002364	exon2	c.G3T	p.M1I	CATCATGCCTCGT	.	460	16	342	0	.	0	0	0	0	0
FAM47C	442444	broad.mit.edu	37	X	37028069	37028069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	FAM47C-111	NM_001013736	exon1	c.T1586C	p.I529T	CCAAGATTCTGGT	.	114	4	94	0	.	0	0	0	0	0
MAGED1	9500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	51640148	51640148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	MAGED1-133	NM_001005333	exon5	c.G1565T	p.R522L	AGCCCCGAGATGT	.	163	74	124	0	.	165	165	0	0	0
IQSEC2	23096	broad.mit.edu	37	X	53264131	53264133	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	IQSEC2-178	NM_001111125	exon15	c.3735_3737del	p.1245_1246del	CCATGATGGTGGT	.	127	7	99	0	.	0	0	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53576374	53576374	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	HUWE1-280	NM_031407	exon67	c.T9581C	p.F3194S	TCCACAAAAAGTA	.	215	113	178	0	.	14	0	14	0	0
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	76939349	76939349	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ATRX-248	NM_000489	exon9	c.A1399T	p.K467X	CCTGTTTTCTTGA	.	58	18	42	0	.	0	0	0	0	0
ABCD1	215	hgsc.bcm.edu;bcgsc.ca	37	X	153001693	153001695	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GTC	GTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ABCD1-130	NM_000033	exon3	c.1209_1211del	p.403_404del	GATCATGTCGTCG	.	165	144	259	1	.	0	0	0	0	0
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAG	rs10902490	bycluster;by2hit2allele;byhapmap	TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	EP400-520	NM_015409	exon47	c.8181_8182insCAGCAGCAG	p.Q2727delinsQQQQ	GCAACAACAGCAG	.	246	0	161	0	.	0	0	0	0	0
GDF15	9518	broad.mit.edu	37	19	18499102	18499103	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	GDF15-650	NM_004864	exon2	c.284_285insG	p.L95fs	TGCGGCTGGGATC	.	345	7	135	0	.	0	0	0	0	0
ABLIM2	84448	hgsc.bcm.edu;bcgsc.ca	37	4	8108224	8108225	+	Nonsense_Mutation	INS	-	-	A	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	ABLIM2-47	NM_001130083	exon2	c.151_152insT	p.K51_A52delinsX	CACCTTTACAGAC	.	112	21	142	0	.	0	0	0	0	0
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	-	CAG	rs201732168		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	TBP-91	NM_003194	exon3	c.189_190insCAG	p.Q63delinsQQ	ACAACAACAGCAG	.	93	56	77	0	-|0.138;CAG|0.862	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5K0-01A-11D-A29I-10	TCGA-OR-A5K0-10B-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	d7593b2a-0d86-44aa-a404-7fd1b10f65d4	6934dbbc-19e6-42c3-9e9f-1db3e7b7981d	.	VARS-93	NM_006295	exon2	c.C151A	p.P51S	GAAAGGGAGTCCT	.	10	0	0	0	G|0.721;T|0.279	0	0	0	0	0