Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	11	10	0	0	G|0.061;T|0.939	0	0	0	0	0
CYP4A22	284541	bcgsc.ca	37	1	47609489	47609489	+	Missense_Mutation	SNP	T	T	C	rs10789501	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CYP4A22-139	NM_001010969	exon6	c.T691C	p.C231R	TTTTGCTGTATGA	.	192	7	194	2	T|0.527;C|0.473	0	0	0	0	0
CLCA4	22802	ucsc.edu	37	1	87045902	87045902	+	Silent	SNP	A	A	T	rs1932809	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CLCA4-92	NM_012128	exon14	c.A2634T	p.T878T	TCCTACACCTACT	.	64	37	118	0	A|0.332;T|0.668	0	0	0	0	0
IGSF3	3321	broad.mit.edu	37	1	117142736	117142736	+	Missense_Mutation	SNP	A	A	G	rs75067537	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	IGSF3-92	NM_001542	exon8	c.T1916C	p.I639T	TTCTCGATGGCAG	.	85	11	96	2	A|0.500;G|0.500	1	1	0	0	0
LCE1F	353137	hgsc.bcm.edu	37	1	152749003	152749008	+	In_Frame_Del	DEL	TGGCTC	TGGCTC	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	TGGCTC	TGGCTC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LCE1F-68	NM_178354	exon1	c.156_161del	p.52_54del	CTGCTGTGGCTCC	.	66	12	58	0	.	0	0	0	0	0
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	222721210	222721210	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	HHIPL2-69	NM_024746	exon1	c.G177T	p.E59D	GCAAAACTCAAGG	.	53	43	72	0	.	0	0	0	0	0
OR14I1	401994	bcgsc.ca	37	1	248845356	248845356	+	Missense_Mutation	SNP	G	G	T	rs41311583	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OR14I1-46	NM_001004734	exon1	c.C250A	p.L84M	GAGTCAGGGAGTT	.	349	12	382	3	G|0.876;T|0.124	0	0	0	0	0
ADARB2	105	hgsc.bcm.edu	37	10	1405402	1405402	+	Missense_Mutation	SNP	C	C	T	rs191180422		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ADARB2-153	NM_018702	exon3	c.G898A	p.E300K	GCCGCTCGGCCGG	.	17	10	0	0	.	0	0	0	0	0
GPRIN2	9721	hgsc.bcm.edu	37	10	47000217	47000217	+	Missense_Mutation	SNP	G	G	A	rs72780221	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GPRIN2-90	NM_014696	exon3	c.G1337A	p.R446H	TGCGGCGCCCCAG	.	16	7	1	0	G|0.901;A|0.099	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	20	8	0	0	T|0.623;G|0.377	0	0	0	0	0
CDHR5	53841	broad.mit.edu	37	11	617527	617527	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDHR5-90	NM_021924	exon15	c.T2362G	p.Y788D	CCTTGTACCCGCC	.	128	29	35	4	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1092947	1092947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MUC2-90	NM_002457	exon30	c.C4766T	p.T1589I	CCACCACCACTAC	.	100	4	86	1	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093344	1093344	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MUC2-90	NM_002457	exon30	c.G5163T	p.P1721P	AACCCCGACACCC	.	73	5	99	1	.	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1266716	1266716	+	Missense_Mutation	SNP	T	T	C	rs80150964		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_002458	exon31	c.T8606C	p.M2869T	TGACCATGGGCTG	.	101	49	189	3	C|1.000;|0.000	1	0	1	0	0
TPCN2	219931	bcgsc.ca	37	11	68851466	68851466	+	Silent	SNP	G	G	T	rs896973	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TPCN2-90	NM_139075	exon19	c.G1743T	p.A581A	GCGTGCGTTTGGC	.	178	8	239	1	G|0.583;T|0.417	1	1	0	0	0
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14610191	14610191	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ATF7IP-252	NM_018179	exon8	c.A2120C	p.E707A	TAAGCGAGAGTGC	.	115	62	83	0	.	1	1	0	0	0
ALDH1L2	160428	hgsc.bcm.edu	37	12	105478202	105478202	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ALDH1L2-91	NM_001034173	exon1	c.G13A	p.G5S	GGCTGCCCCGCCG	.	14	9	0	0	.	0	0	0	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	EFHA1-90	NM_152726	exon1	c.G30A	p.R10R	CGCCACCCGCGCG	.	28	27	0	0	C|0.873;T|0.127	2	0	2	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_032849	exon1	c.A175G	p.R59G	GTGGCCAGGCCCG	.	6	6	0	0	A|0.219;G|0.781	0	0	0	0	0
DLEU7	220107	hgsc.bcm.edu	37	13	51417535	51417535	+	Missense_Mutation	SNP	G	G	A	rs898861		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_198989	exon1	c.C248T	p.A83V	GAGTTCGCCCGCG	.	10	9	0	0	G|0.789;A|0.211	0	0	0	0	0
GALC	2581	bcgsc.ca	37	14	88450770	88450770	+	Missense_Mutation	SNP	G	G	A	rs1805078	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GALC-90	NM_000153	exon5	c.C550T	p.R184C	GGTAACGCTTGGC	.	183	10	205	2	G|0.966;A|0.034	0	0	0	0	0
ITPK1	3705	hgsc.bcm.edu	37	14	93408017	93408017	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ITPK1-115	NM_001142593	exon11	c.G1134A	p.A378A	GCCGCCCGCGTCG	.	12	12	0	0	.	0	0	0	0	0
SNURF	8926	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	25207273	25207273	+	Missense_Mutation	SNP	C	C	A	rs426541	byfrequency;alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SNURF-90	NM_005678	exon2	c.C27A	p.H9Q	CTTACACCTGAGA	.	112	17	109	0	C|0.990;T|0.010	0	0	0	0	0
CDAN1	146059	bcgsc.ca	37	15	43017426	43017426	+	Silent	SNP	T	T	G	rs16957091	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDAN1-92	NM_138477	exon27	c.A3474C	p.L1158L	CTCCCGTAGCAAG	.	115	7	165	2	T|0.565;G|0.435	9	9	0	0	0
UBR1	197131	bcgsc.ca	37	15	43256191	43256191	+	Missense_Mutation	SNP	T	T	C	rs3917223	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	UBR1-91	NM_174916	exon42	c.A4642G	p.T1548A	AATTTGTAGGTAA	.	74	4	82	0	T|0.630;G|0.013;C|0.038;A|0.319	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	41	23	0	0	G|0.793;A|0.207	7	7	0	0	0
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30976945	30976945	+	Silent	SNP	C	C	T	rs146323096		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SETD1A-93	NM_014712	exon8	c.C1743T	p.D581D	TGGAGACGACATG	.	75	38	71	0	C|1.000;T|0.000	0	0	0	0	0
BCAR1	9564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	75269596	75269596	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	BCAR1-1145	NM_001170714	exon6	c.G1339C	p.D447H	CACCATCAGCCAC	.	207	96	81	0	.	11	8	3	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	12	10	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	14	12	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	14	0	0	0	.	0	0	0	0	0
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	4798460	4798460	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MINK1-943	NM_153827	exon25	c.G3008A	p.R1003Q	ACACCCGGGCCCA	.	98	83	121	0	.	2	0	2	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ARHGAP23-205	NM_001199417	exon24	c.T3819C	p.D1273D	GGGGGATGAGGCG	.	9	9	0	0	C|0.823;G|0.000;T|0.177	1	0	1	0	0
CRHR1	1394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	43907881	43907881	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CRHR1-522	NM_001145146	exon8	c.G741A	p.V247V	CATCGTGCTCACC	.	89	77	114	0	.	0	0	0	0	0
PGS1	9489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76394346	76394346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PGS1-90	NM_024419	exon4	c.A425G	p.E142G	GCCTGGAAAGTAC	.	31	25	54	0	.	0	0	0	0	0
OSBPL1A	114876	bcgsc.ca	37	18	21752366	21752366	+	Silent	SNP	A	A	G	rs2077984	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OSBPL1A-94	NM_080597	exon22	c.T2175C	p.Y725Y	ATTGCCATACTGT	.	111	6	183	2	A|0.894;G|0.106	1	1	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929741	929741	+	Silent	SNP	C	C	T	rs34967265	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ARID3A-90	NM_005224	exon2	c.C213T	p.G71G	TGCGGGCCTGGGA	.	11	7	0	0	C|0.865;T|0.135	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	13	13	0	0	A|0.114;G|0.886	0	0	0	0	0
TMEM259	91304	hgsc.bcm.edu	37	19	1010396	1010396	+	Missense_Mutation	SNP	G	G	C	rs77868901		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_001033026	exon11	c.C1816G	p.P606A	AGGCCGGGCTAGG	.	27	10	3	0	G|0.970;C|0.030	163	83	80	0	0
REXO1	57455	hgsc.bcm.edu	37	19	1827378	1827415	+	Frame_Shift_Del	DEL	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	GCCGGCCGCCGGTCGGGAGTCCCCGCTTGTGGGGCTCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	REXO1-90	NM_020695	exon2	c.1373_1410del	p.458_470del	GCCTCTGCCGGCC	.	20	11	1	0	.	0	0	0	0	0
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9060456	9060456	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MUC16-566	NM_024690	exon3	c.C26990A	p.T8997K	GTGGATGTTGACT	.	213	80	135	1	.	0	0	0	0	0
SLC44A2	57153	hgsc.bcm.edu	37	19	10745635	10745674	+	Frame_Shift_Del	DEL	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	CTTTGCCCTTTGCAGTGATCATTCTGAGTATCCTTGAAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SLC44A2-91	NM_020428	exon12	c.956_980del	p.319_327del	CTCAGCCTTTGCC	.	81	28	54	0	.	0	0	0	0	0
OR10H3	26532	bcgsc.ca	37	19	15852621	15852621	+	Missense_Mutation	SNP	G	G	A	rs151318110	byfrequency;alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OR10H3-68	NM_013938	exon1	c.G419A	p.R140H	GTCCCCGTGGCTG	.	238	114	168	3	G|0.999;T|0.001	0	0	0	0	0
ANO8	57719	broad.mit.edu	37	19	17438052	17438052	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ANO8-93	NM_020959	exon16	c.G2653T	p.A885S	TAAAGGCCTCGCG	.	80	6	63	1	.	0	0	0	0	0
MAU2	23383	hgsc.bcm.edu	37	19	19431690	19431704	+	In_Frame_Del	DEL	GCGGCCCAGGCGGCG	GCGGCCCAGGCGGCG	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GCGGCCCAGGCGGCG	GCGGCCCAGGCGGCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MAU2-91	NM_015329	exon1	c.22_36del	p.8_12del	GCGGCAGCGGCCC	.	64	48	3	0	.	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	RGS9BP-90	NM_207391	exon1	c.G286T	p.A96S	CGACGCGCGCTGG	.	12	7	0	0	G|0.540;T|0.460	0	0	0	0	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183352	33183352	+	Silent	SNP	G	G	C	rs61732600	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NUDT19-22	NM_001105570	exon1	c.G486C	p.P162P	ACCGCCGGGCCTG	.	22	8	0	0	G|0.743;C|0.257	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	28	10	0	0	T|0.545;C|0.455	0	0	0	0	0
DLL3	10683	hgsc.bcm.edu	37	19	39989862	39989862	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	DLL3-1083	NM_016941	exon2	c.A100T	p.I34F	CTGCAGATCCACT	.	29	17	5	0	.	0	0	0	0	0
CEACAM6	4680	bcgsc.ca	37	19	42260742	42260742	+	Missense_Mutation	SNP	C	C	T	rs141329594	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CEACAM6-91	NM_002483	exon2	c.C299T	p.T100I	GAGAGACAATATA	.	402	26	298	7	C|0.996;T|0.004	0	0	0	0	0
ZNF233	353355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44777858	44777858	+	Missense_Mutation	SNP	C	C	T	rs143381681		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ZNF233-92	NM_001207005	exon5	c.C1045T	p.R349W	TATGCCCGGAGCT	.	138	71	91	1	C|1.000;T|0.000	0	0	0	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	74	30	2	0	T|0.861;C|0.139	313	109	204	0	0
APOE	348	hgsc.bcm.edu	37	19	45412079	45412079	+	Missense_Mutation	SNP	C	C	T	rs7412	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	APOE-90	NM_000041	exon4	c.C526T	p.R176C	CAGAAGCGCCTGG	.	12	9	0	0	C|0.933;T|0.067	149	86	62	0	1
NR1H2	7376	hgsc.bcm.edu	37	19	50881832	50881866	+	Frame_Shift_Del	DEL	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	GAGTCACAGTCACAGTCGCAGTCACCTGTGGGGCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NR1H2-186	NM_007121	exon6	c.526_560del	p.176_187del	CAGCAGGAGTCAC	.	104	0	72	0	.	0	0	0	0	0
NR1H2	7376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50881858	50881864	+	Frame_Shift_Del	DEL	TGTGGGG	TGTGGGG	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	TGTGGGG	TGTGGGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NR1H2-186	NM_007121	exon6	c.552_558del	p.184_186del	GTCACCTGTGGGG	.	80	0	59	0	.	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	6	6	0	0	A|0.003;G|0.997	0	0	0	0	0
TTC7A	57217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	47184029	47184029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TTC7A-136	NM_020458	exon3	c.G400A	p.E134K	TACGTGGAGGGCT	.	144	8	219	0	.	3	2	1	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	RNF149-290	NM_173647	exon1	c.A25G	p.S9G	CGACGCTGGCTTC	.	8	8	0	0	T|0.543;C|0.457	0	0	0	0	0
UNC80	285175	broad.mit.edu;bcgsc.ca	37	2	210705348	210705348	+	Silent	SNP	C	C	G	rs10178675	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	UNC80-90	NM_032504	exon20	c.C3339G	p.L1113L	CCGACTCTCTTTC	.	102	5	130	1	C|0.831;G|0.169	0	0	0	0	0
SPAG16	79582	bcgsc.ca	37	2	214794743	214794743	+	Missense_Mutation	SNP	A	A	C	rs12623569	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SPAG16-188	NM_024532	exon12	c.A1274C	p.K425T	TATGTAAAGGCGA	.	133	6	148	1	A|0.722;C|0.278	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	19	7	0	0	C|0.769;T|0.231	0	0	0	0	0
SULF2	55959	broad.mit.edu	37	20	46300955	46300955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SULF2-293	NM_001161841	exon11	c.A1563C	p.K521N	GAAGAGTTTTTTC	.	103	6	66	1	.	0	0	0	0	0
KCNG1	3755	broad.mit.edu	37	20	49626376	49626376	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	KCNG1-515	NM_002237	exon2	c.G500T	p.R167L	TAGCGGCGCTTGC	.	106	12	43	1	.	0	0	0	0	0
SEPT5	5413	hgsc.bcm.edu	37	22	19702147	19702147	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SEPT5-636	NM_002688	exon1	c.G36A	p.A12A	GCTGGCGACCCCA	.	14	14	0	0	.	0	0	0	0	0
LRRN1	57633	broad.mit.edu;bcgsc.ca	37	3	3887575	3887575	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LRRN1-90	NM_020873	exon2	c.A1250T	p.D417V	TCCAGGATTCGAG	.	104	86	125	2	.	0	0	0	0	0
UBP1	7342	bcgsc.ca	37	3	33458266	33458266	+	Missense_Mutation	SNP	T	T	C	rs3736563	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	UBP1-537	NM_001128160	exon3	c.A326G	p.N109S	TTTCCATTGATCT	.	232	7	337	5	T|0.585;C|0.415	1	1	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CHDH-91	NM_018397	exon3	c.A119C	p.E40A	CTGTACTCGTCCC	.	8	7	1	0	T|0.749;G|0.251	0	0	0	0	0
CD200	4345	bcgsc.ca	37	3	112068596	112068596	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CD200-90	NM_001004196	exon6	c.T807C	p.V269V	CATTGTTTCCCTG	.	58	4	67	0	.	2	2	0	0	0
GPR156	165829	hgsc.bcm.edu;bcgsc.ca	37	3	119962580	119962580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GPR156-92	NM_001168271	exon2	c.C140A	p.P47H	AGGACAGGAGATA	.	47	4	79	0	.	0	0	0	0	0
MUC4	4585	ucsc.edu;bcgsc.ca	37	3	195517745	195517745	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MUC4-90	NM_018406	exon2	c.T706G	p.S236A	TCTGAGAAACAGT	.	286	246	307	4	.	0	0	0	0	0
MFSD7	84179	hgsc.bcm.edu	37	4	675949	675949	+	Missense_Mutation	SNP	G	G	A	rs183765686		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MFSD7-90	NM_032219	exon10	c.C1478T	p.A493V	CCCCTCGCCGTGC	.	12	7	1	0	G|0.991;A|0.009	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388726	1388726	+	Missense_Mutation	SNP	T	T	C	rs199689156	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CRIPAK-90	NM_175918	exon1	c.T427C	p.C143R	TGCCCATGCGGAG	.	163	10	5	0	T|0.980;C|0.020	5	5	0	0	0
FAM53A	152877	hgsc.bcm.edu	37	4	1656850	1656850	+	Missense_Mutation	SNP	G	G	A	rs62287701	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	FAM53A-90	NM_001013622	exon4	c.C737T	p.T246M	GCAGGCGTGGACG	.	47	18	1	0	G|0.991;A|0.009	1	0	1	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	77	7	5	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	80	15	7	0	.	0	0	0	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228472	4228472	+	Silent	SNP	T	T	C	rs76810534		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OTOP1-92	NM_177998	exon1	c.A120G	p.E40E	CGGGGATTCCGGG	.	57	12	5	0	.	0	0	0	0	0
SOWAHB	345079	hgsc.bcm.edu	37	4	77818202	77818202	+	Silent	SNP	T	T	C	rs2645674	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_001029870	exon1	c.A801G	p.T267T	CCTGCTTGTCGCA	.	17	6	0	0	T|0.691;C|0.309	0	0	0	0	0
KIAA0922	23240	bcgsc.ca	37	4	154513627	154513627	+	Missense_Mutation	SNP	A	A	G	rs7669418	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	KIAA0922-92	NM_001131007	exon18	c.A1813G	p.I605V	ACCTAGATCAAGT	.	75	7	62	0	A|0.743;G|0.257	0	0	0	0	0
NAF1	92345	hgsc.bcm.edu	37	4	164050186	164050186	+	Missense_Mutation	SNP	C	C	T	rs200516616		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NAF1-70	NM_138386	exon8	c.G1348A	p.G450S	CCCAACCCATGTT	.	6	4	7	0	.	0	0	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	13	8	4	0	T|0.735;G|0.265	0	0	0	0	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SNX18-226	NM_052870	exon1	c.T270C	p.P90P	CCTGCCTGTCGCG	.	4	4	0	0	G|0.979;C|0.003	0	0	0	0	0
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79029401	79029401	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CMYA5-77	NM_153610	exon2	c.G4813C	p.D1605H	CAGGGAGACTTCC	.	135	42	51	0	.	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	6	6	0	0	T|0.046;G|0.950	0	0	0	0	0
ATP10B	23120	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160049541	160049541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ATP10B-72	NM_025153	exon14	c.G1672T	p.A558S	ACAGGGCAGCATC	.	169	54	100	1	.	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	9	9	0	0	A|0.006;G|0.994	0	0	0	0	0
DAXX	1616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33288624	33288624	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	DAXX-731	NM_001141970	exon3	c.C964T	p.Q322X	TGAGCTGGAGCTG	.	78	63	121	0	.	0	0	0	0	0
SYNGAP1	8831	bcgsc.ca	37	6	33408542	33408542	+	Silent	SNP	G	G	A	rs411136	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SYNGAP1-48	NM_006772	exon11	c.G1713A	p.S571S	TGCTTCGTGGCGG	.	46	5	56	0	G|0.608;A|0.392	1	1	0	0	0
MMS22L	253714	ucsc.edu;bcgsc.ca	37	6	97627382	97627382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MMS22L-92	NM_198468	exon17	c.C2438A	p.T813N	CTTACGGTTAAGG	.	46	4	52	0	.	0	0	0	0	0
CDK19	23097	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110953362	110953362	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDK19-548	NM_015076	exon6	c.G517C	p.D173H	CCATGTCAGCTAA	.	14	14	28	0	.	0	0	0	0	0
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	112455803	112455803	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LAMA4-140	NM_001105206	exon26	c.C3423A	p.I1141I	GTAAATGATTGAG	.	26	20	27	0	.	0	0	0	0	0
FAM26D	221301	broad.mit.edu	37	6	116875427	116875427	+	Silent	SNP	G	G	A	rs7762318	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	FAM26D-90	NM_001256887	exon3	c.G42A	p.L14L	GATCCTGGCTGGG	.	63	4	72	2	G|0.360;A|0.640	0	0	0	0	0
UTRN	7402	hgsc.bcm.edu;ucsc.edu	37	6	145093104	145093104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	UTRN-95	NM_007124	exon58	c.G8557T	p.A2853S	TCCCTTGGTAAGT	.	37	4	13	0	.	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	9	9	0	0	G|0.492;C|0.508	1	0	1	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	51	24	9	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	21	8	0	0	C|0.329;G|0.671	2	0	2	0	0
OGDH	4967	broad.mit.edu	37	7	44684936	44684936	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	OGDH-228	NM_001165036	exon3	c.233delT	p.I78fs	GGGACATTTTTTT	.	102	7	73	0	.	0	0	0	0	0
GTF2I	2969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	74119504	74119504	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	GTF2I-90	NM_032999	exon7	c.G595C	p.V199L	GGTCGTGTGATGG	.	30	6	28	0	.	0	0	0	0	0
CUX1	1523	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	101821789	101821789	+	Missense_Mutation	SNP	T	T	C	rs146654997		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CUX1-160	NM_001202543	exon11	c.T902C	p.V301A	TAGAAGTTGAGTT	.	297	42	238	1	T|1.000;C|0.000	5	5	0	0	0
TMEM168	64418	broad.mit.edu	37	7	112424402	112424402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	TMEM168-91	NM_022484	exon2	c.T479C	p.L160P	AGCTCCAGAAATT	.	162	6	109	0	.	0	0	0	0	0
ASIC3	9311	broad.mit.edu	37	7	150746080	150746080	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_020322	exon1	c.C108A	p.G36G	GCCAGGCAGCCTG	.	157	7	42	1	.	1	1	0	0	0
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55540356	55540356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	RP1-102	NM_006269	exon4	c.T3914C	p.L1305P	GTTCACTTACTGA	.	116	17	118	0	.	0	0	0	0	0
CYP11B2	1585	broad.mit.edu	37	8	143996654	143996654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CYP11B2-90	NM_000498	exon3	c.C403A	p.P135T	ATTCAGGCCCATT	.	78	7	113	1	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	13	13	0	0	C|0.740;T|0.260	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998190	144998190	+	Silent	SNP	A	A	G	rs2857829	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PLEC-141	NM_201380	exon31	c.T6318C	p.A2106A	CCTCGCAGCCTCC	.	21	21	0	0	A|0.738;G|0.262	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998868	144998868	+	Silent	SNP	C	C	T	rs140406501	by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PLEC-141	NM_201380	exon31	c.G5640A	p.A1880A	TGCAGCCGCCTCA	.	9	8	0	0	C|0.978;T|0.022	1	0	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	13	12	0	0	C|0.707;T|0.293	0	0	0	0	0
SMARCA2	6595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	2077741	2077741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	SMARCA2-653	NM_139045	exon14	c.G2149T	p.A717S	CAGTCTGCCCTCC	.	246	100	150	0	.	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	22	11	2	0	G|0.572;C|0.428	1	1	0	0	0
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu	37	9	20414341	20414343	+	In_Frame_Del	DEL	CTA	CTA	-	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	CTA	CTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MLLT3-660	NM_004529	exon5	c.501_503del	p.167_168del	CTGCTGCTACTGC	.	46	17	34	0	.	0	0	0	0	0
MLLT3	4300	hgsc.bcm.edu	37	9	20414349	20414349	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	MLLT3-660	NM_004529	exon5	c.C495T	p.S165S	ACTGCTGCTGCTG	.	42	9	30	0	.	2	2	0	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	BAG1-228	NM_004323	exon1	c.G133C	p.G45R	GACGCCCAGAGGG	.	19	19	0	0	C|0.976;G|0.024	3	0	3	0	0
NCBP1	4686	hgsc.bcm.edu	37	9	100396172	100396172	+	Silent	SNP	G	G	A	rs117645731	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NCBP1-90	NM_002486	exon1	c.G9A	p.R3R	GTCGCGGCGGCGG	.	116	66	5	0	G|0.991;A|0.009	0	0	0	0	0
KIAA1984	84960	hgsc.bcm.edu	37	9	139694613	139694613	+	Missense_Mutation	SNP	C	C	A	rs35342663	byfrequency	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	KIAA1984-91	NM_001039374	exon4	c.C430A	p.L144M	CTGCGGCTGCTGC	.	25	9	2	0	C|0.928;A|0.072	0	0	0	0	0
CDR1	1038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	139865766	139865766	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	CDR1-130	NM_004065	exon1	c.A766G	p.T256A	TCAGTGTCTTCCA	.	158	147	115	0	.	0	0	0	0	0
NCOR2	9612	broad.mit.edu	37	12	124824721	124824722	+	In_Frame_Ins	INS	-	-	GCCGCTGCT	rs143952466	bycluster;by1000genomes	TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NCOR2-229	NM_006312	exon39	c.5518_5519insAGCAGCGGC	p.G1840delinsSSGG	CACCCCCGCCGCT	.	32	19	4	0	.	0	0	0	0	0
KCNN2	3781	broad.mit.edu	37	5	113698631	113698632	+	In_Frame_Ins	INS	-	-	GCC	rs151038013		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	KCNN2-92	NM_021614	exon1	c.159_160insGCC	p.A53delinsAA	AGCCGCTGCCGCC	.	69	21	6	0	-|0.472;GCC|0.528	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	AGCGTCATCTTGT	.	434	0	292	0	.	0	0	0	0	0
NR1H2	7376	bcgsc.ca	37	19	50881865	50881866	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5K8-01A-11D-A29I-10	TCGA-OR-A5K8-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	104c32cd-f89e-4198-9108-033ace38f66b	6def7b38-71db-4a33-a6ca-bd7dda66512e	.	NR1H2-186	NM_007121	exon6	c.C560A	p.P187K	TGGGGCCGCAGGG	.	66	4	57	0	.	0	0	0	0	0