Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305292	6305292	+	Missense_Mutation	SNP	C	C	A	rs61760836		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HES3-514	NM_001024598	exon4	c.C286A	p.P96T	CTGGTGCCCGAGA	.	6	6	0	0	C|0.430;A|0.570	0	0	0	0	0
HES3	390992	hgsc.bcm.edu	37	1	6305303	6305303	+	Silent	SNP	C	C	A	rs61760837		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HES3-514	NM_001024598	exon4	c.C297A	p.A99A	GAGCGCCGCCGGC	.	6	6	0	0	C|0.438;A|0.562	0	0	0	0	0
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16580181	16580181	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FBXO42-228	NM_018994	exon7	c.813delC	p.S271fs	CGGCTTGGACCAC	.	80	21	56	0	.	0	0	0	0	0
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92446707	92446707	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	BRDT-374	NM_001242806	exon10	c.T1734A	p.C578X	GGCATGTCTAAGA	.	57	15	62	0	.	0	0	0	0	0
SLC35A3	23443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100483292	100483292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SLC35A3-90	NM_001271685	exon7	c.A934G	p.K312E	ATTTTAAAAGGAT	.	127	36	143	1	.	0	0	0	0	0
PRPF38B	55119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109235422	109235425	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CTTA	CTTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PRPF38B-90	NM_018061	exon1	c.209_212del	p.70_71del	CGTCGCCTTACTT	.	379	130	206	0	.	0	0	0	0	0
RSBN1	54665	hgsc.bcm.edu	37	1	114354654	114354654	+	Silent	SNP	T	T	C	rs3195954	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RSBN1-91	NM_018364	exon1	c.A381G	p.P127P	ATTCGTTGGCGGC	.	32	16	0	0	T|0.861;C|0.139	0	0	0	0	0
CA14	23632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	150232559	150232559	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CA14-91	NM_012113	exon2	c.G69T	p.T23T	CTGGACGTATGAG	.	220	39	192	0	.	0	0	0	0	0
SCAMP3	10067	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155227427	155227429	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AGG	AGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SCAMP3-93	NM_005698	exon6	c.537_539del	p.179_180del	AAGTTCAGGAGAA	.	224	34	241	0	.	0	0	0	0	0
C1orf106	55765	hgsc.bcm.edu	37	1	200880978	200880978	+	Missense_Mutation	SNP	C	C	T	rs296520	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C1orf106-93	NM_018265	exon9	c.C1654T	p.R552C	GAGCTGCGCCGCG	.	26	26	1	0	C|0.242;T|0.758	0	0	0	0	0
TNNT2	7139	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201338962	201338962	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TNNT2-90	NM_001276345	exon5	c.T79A	p.W27R	CTCTCCAGTCCTC	.	170	24	111	1	.	0	0	0	0	0
EPHX1	2052	broad.mit.edu;bcgsc.ca	37	1	226032262	226032264	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	EPHX1-281	NM_001136018	exon8	c.1104_1106del	p.368_369del	CATCATCTCCTCC	.	121	15	119	0	.	0	0	0	0	0
IRF2BP2	359948	hgsc.bcm.edu	37	1	234744413	234744413	+	Silent	SNP	C	C	A	rs4636	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	IRF2BP2-90	NM_182972	exon1	c.G828T	p.A276A	CCCGGCCGCGGTG	.	8	5	0	0	C|0.714;A|0.286	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	237580422	237580422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RYR2-158	NM_001035	exon11	c.G847A	p.A283T	AGAGTTGCGTAAG	.	178	20	133	0	.	0	0	0	0	0
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70406351	70406351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TET1-663	NM_030625	exon4	c.A3865C	p.T1289P	CAGTTAACGGTGA	.	165	36	152	0	.	0	0	0	0	0
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71017117	71017117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HKDC1-95	NM_025130	exon14	c.A1967G	p.D656G	TGAATGATACAGT	.	202	26	139	0	.	0	0	0	0	0
BTAF1	9044	hgsc.bcm.edu	37	10	93726392	93726392	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	BTAF1-92	NM_003972	exon14	c.1530-2A>G	.	TTTATTAGTATTC	.	74	4	42	0	.	0	0	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	19	19	0	0	A|0.009;G|0.991	0	0	0	0	0
SORCS3	22986	hgsc.bcm.edu;bcgsc.ca	37	10	106976865	106976865	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SORCS3-99	NM_014978	exon19	c.2719delT	p.F907fs	GTCCTCTTCCTGC	.	254	57	138	2	.	0	0	0	0	0
SMC3	9126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112341738	112341738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SMC3-92	NM_005445	exon9	c.C605T	p.T202I	TACATACTCTAGA	.	75	13	66	0	.	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	23	9	0	0	C|0.860;T|0.140	0	0	0	0	0
KNDC1	85442	bcgsc.ca	37	10	135010635	135010635	+	Missense_Mutation	SNP	G	G	A	rs41317288	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KNDC1-229	NM_152643	exon11	c.G1808A	p.C603Y	CCATCTGCCAGGT	.	332	10	162	1	G|0.981;A|0.019	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012429	+	Missense_Mutation	SNP	T	T	A	rs3008390		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KNDC1-229	NM_152643	exon14	c.T2417A	p.V806D	CTGGAGTTGCTTC	.	19	12	2	0	T|0.406;A|0.594	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	24	23	0	0	C|0.602;T|0.398	0	0	0	0	0
PRKCDBP	112464	hgsc.bcm.edu	37	11	6341365	6341365	+	Silent	SNP	C	C	T	rs11544764	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PRKCDBP-115	NM_145040	exon1	c.G342A	p.G114G	CAGCAGCCCGTGG	.	5	5	1	0	C|0.902;T|0.098	0	0	0	0	0
OR10A4	283297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6898684	6898684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	OR10A4-69	NM_207186	exon1	c.C806G	p.S269C	CCTCTTCTGAGAG	.	89	19	68	1	.	0	0	0	0	0
MRGPRX4	117196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18195200	18195200	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MRGPRX4-91	NM_054032	exon1	c.C397T	p.R133C	CGCTGCCGCCGCC	.	146	28	106	0	.	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810209	65810209	+	Silent	SNP	C	C	T	rs61895584	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GAL3ST3-91	NM_033036	exon3	c.G1065A	p.P355P	CTGCCACGGCTGC	.	8	5	0	0	C|0.233;T|0.767	0	0	0	0	0
PPP1CA	5499	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	67166486	67166487	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AG	AG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PPP1CA-659	NM_001008709	exon5	c.704_705del	p.235_235del	GGTAAAAGAGACG	.	108	25	98	0	.	0	0	0	0	0
CCDC81	60494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	86086270	86086270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CCDC81-91	NM_021827	exon1	c.C65T	p.S22L	TGCCCTCGCTGAG	.	37	11	32	0	.	0	0	0	0	0
ATM	472	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	108123627	108123627	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ATM-3419	NM_000051	exon12	c.1886delG	p.S629fs	TCCAAAGCGTGCC	.	48	17	42	0	.	0	0	0	0	0
BHLHE41	79365	hgsc.bcm.edu	37	12	26275827	26275827	+	Silent	SNP	C	C	G	rs61754129		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	BHLHE41-226	NM_030762	exon5	c.G621C	p.A207A	CTGCCCCGCGCGC	.	22	12	0	0	.	0	0	0	0	0
ITPR2	3709	ucsc.edu;bcgsc.ca	37	12	26732987	26732987	+	Silent	SNP	G	G	A	rs2230376	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ITPR2-542	NM_002223	exon33	c.C4482T	p.P1494P	TGAAAAGGGAGAA	.	25	4	20	0	G|0.794;A|0.206	0	0	0	0	0
KRT78	196374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53233007	53233007	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KRT78-188	NM_173352	exon9	c.G1453A	p.D485N	CAGGGTCCTTCCC	.	214	38	125	0	.	0	0	0	0	0
AMHR2	269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53822782	53822782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	AMHR2-628	NM_020547	exon7	c.C955T	p.R319C	GAGGAGCGCTGGC	.	51	10	48	0	.	0	0	0	0	0
LRIG3	121227	broad.mit.edu	37	12	59284579	59284579	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LRIG3-229	NM_153377	exon5	c.384-1G>T	.	CCAGCCCTAGAAT	.	31	3	19	0	.	0	0	0	0	0
LRIG3	121227	hgsc.bcm.edu	37	12	59313936	59313936	+	Silent	SNP	T	T	G	rs61754220	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LRIG3-229	NM_153377	exon1	c.A81C	p.S27S	GCTGTCTGACCGG	.	23	10	3	0	T|0.908;G|0.092	0	0	0	0	0
ATXN7L3B	552889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	74932091	74932092	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001136262	exon1	c.199_200del	p.67_67del	GAAGACAAAGGAG	.	151	23	91	0	.	0	0	0	0	0
NAV3	89795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	78583826	78583826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NAV3-279	NM_014903	exon33	c.C6052A	p.Q2018K	ATTACCCAAAGGT	.	99	8	66	0	.	0	0	0	0	0
NEDD1	121441	broad.mit.edu;bcgsc.ca	37	12	97338562	97338562	+	Missense_Mutation	SNP	C	C	T	rs144294186		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NEDD1-90	NM_001135175	exon12	c.C1664T	p.S555F	ATGGATCCTCAAC	.	206	9	131	0	C|1.000;T|0.000	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	20	10	0	0	.	0	0	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	21	9	1	0	T|0.767;C|0.233	0	0	0	0	0
ATP6V0A2	23545	hgsc.bcm.edu;broad.mit.edu	37	12	124232193	124232196	+	Frame_Shift_Del	DEL	TCTT	TCTT	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	TCTT	TCTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ATP6V0A2-92	NM_012463	exon14	c.1645_1648del	p.549_550del	CTAAACTCTTTCA	.	100	9	86	0	.	0	0	0	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	60	23	0	0	T|0.868;C|0.132	0	0	0	0	0
ZMYM2	7750	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	20641036	20641036	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZMYM2-685	NM_001190964	exon21	c.A3178G	p.S1060G	GATGATAGTTCTG	.	59	17	79	1	.	0	0	0	0	0
MIPEP	4285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	24304549	24304549	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MIPEP-90	NM_005932	exon19	c.G2080C	p.V694L	CACTTACGAAGTC	.	86	14	76	0	.	0	0	0	0	0
CCDC168	643677	broad.mit.edu	37	13	103397238	103397238	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001146197	exon4	c.5809delG	p.E1937fs	CCTTTTCCCCTTT	.	60	7	65	0	.	0	0	0	0	0
FOXG1	2290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	29237445	29237445	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FOXG1-660	NM_005249	exon1	c.C960T	p.R320R	CCCCCGCGCCAGC	.	109	7	34	0	.	0	0	0	0	0
PAPLN	89932	broad.mit.edu;bcgsc.ca	37	14	73711367	73711367	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PAPLN-70	NM_173462	exon3	c.C70A	p.R24R	GTGAGGCGGCAGA	.	120	5	118	0	.	0	0	0	0	0
LGMN	5641	bcgsc.ca	37	14	93170993	93170993	+	Silent	SNP	C	C	T	rs9791	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LGMN-91	NM_005606	exon13	c.G1251A	p.P417P	GTGAAGCGGATAC	.	216	9	168	0	C|0.681;T|0.319	0	0	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105412335	105412335	+	Silent	SNP	C	C	T	rs202104959	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	AHNAK2-47	NM_138420	exon7	c.G9453A	p.P3151P	GAACGACGGCATC	.	20	6	15	0	C|0.963;T|0.037	0	0	0	0	0
UBE3A	7337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	25616489	25616489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	UBE3A-660	NM_000462	exon7	c.C841T	p.P281S	AATTAGGATCTCG	.	77	7	90	0	.	0	0	0	0	0
AQR	9716	broad.mit.edu	37	15	35176926	35176926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	AQR-135	NM_014691	exon26	c.C2827A	p.R943S	CCCAGCGAGACAT	.	48	3	53	0	.	0	0	0	0	0
CALML4	91860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68491886	68491886	+	Silent	SNP	G	G	A	rs200702934	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CALML4-90	NM_033429	exon3	c.C297T	p.H99H	TATCCCGTGGGTC	.	54	5	46	0	G|0.998;A|0.002	0	0	0	0	0
FBXO22	26263	broad.mit.edu	37	15	76225142	76225142	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FBXO22-658	NM_147188	exon7	c.C911A	p.A304D	CTGAGGCTGCGAT	.	102	9	104	1	.	0	0	0	0	0
PDIA2	64714	hgsc.bcm.edu	37	16	334685	334685	+	Missense_Mutation	SNP	G	G	A	rs200919010		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PDIA2-91	NM_006849	exon3	c.G433A	p.E145K	ATTGCCGAGTGGC	.	33	17	3	0	.	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	31	16	0	0	G|0.793;A|0.207	0	0	0	0	0
LCMT1	51451	broad.mit.edu	37	16	25143773	25143773	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LCMT1-22	NM_016309	exon3	c.C256G	p.R86G	TTTCTACGGAAGA	.	111	3	116	0	.	0	0	0	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	4	4	0	0	C|0.218;G|0.782	0	0	0	0	0
VPS35	55737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	46714715	46714715	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	VPS35-90	NM_018206	exon5	c.C374G	p.S125C	TTCCTGGACTGAG	.	226	24	215	0	.	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	4	4	0	0	T|0.035;G|0.004	0	0	0	0	0
WWP2	11060	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	69874080	69874080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	WWP2-658	NM_001270454	exon5	c.T392G	p.V131G	GCAGCGTTGTCTC	.	114	25	112	1	.	0	0	0	0	0
ELP5	23587	bcgsc.ca	37	17	7155861	7155861	+	Missense_Mutation	SNP	G	G	A	rs2521988	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_203414	exon1	c.G40A	p.E14K	GGACGCGAGTTGG	.	107	5	67	0	G|0.906;A|0.094	0	0	0	0	0
GSDMA	284110	bcgsc.ca	37	17	38121993	38121993	+	Missense_Mutation	SNP	G	G	A	rs3894194	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GSDMA-90	NM_178171	exon2	c.G53A	p.R18Q	ACCCTCGAGGGGA	.	104	6	91	1	G|0.341;T|0.179	0	0	0	0	0
KRT27	342574	bcgsc.ca	37	17	38936017	38936017	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KRT27-90	NM_181537	exon4	c.C781A	p.R261R	CAGCTCGCATATT	.	112	5	76	0	.	0	0	0	0	0
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240789	39240803	+	In_Frame_Del	DEL	CGCCCCAGCTGCTGC	CGCCCCAGCTGCTGC	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CGCCCCAGCTGCTGC	CGCCCCAGCTGCTGC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_033061	exon1	c.331_345del	p.111_115del	TGCTGCCGCCCCA	.	124	0	33	0	.	0	0	0	0	0
C17orf53	78995	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42225398	42225398	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C17orf53-90	NM_001171251	exon3	c.A227G	p.D76G	TGCCAGACTTGGA	.	56	6	62	0	.	0	0	0	0	0
ABCC3	8714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48741342	48741342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ABCC3-93	NM_003786	exon10	c.C1208T	p.A403V	AACGTGCGTCCAC	.	263	86	254	0	.	0	0	0	0	0
HEATR6	63897	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58151224	58151224	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HEATR6-227	NM_022070	exon3	c.G351A	p.L117L	GAAATCCAAGTGC	.	177	75	197	1	.	0	0	0	0	0
TMEM200C	645369	hgsc.bcm.edu	37	18	5890571	5890571	+	Missense_Mutation	SNP	T	T	C	rs7506026		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001080209	exon1	c.A1492G	p.S498G	GAGGGCTGGAGTC	.	14	8	0	0	T|0.941;C|0.059	0	0	0	0	0
ANKRD20A5P	440482	ucsc.edu	37	18	14183747	14183747	+	RNA	SNP	T	T	C	rs62085006		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ANKRD20A5P-90	.	.	.	.	AGAAAATAGAACG	.	45	9	34	1	.	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	6	6	0	0	T|0.495;C|0.504	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	4	4	0	0	A|0.114;G|0.886	0	0	0	0	0
FZR1	51343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3525978	3525978	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FZR1-227	NM_001136197	exon2	c.T182G	p.F61C	TGAACTTCCACAG	.	121	22	65	0	.	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	12	5	4	0	C|0.788;T|0.212	0	0	0	0	0
DDX39A	10212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14520224	14520224	+	Missense_Mutation	SNP	C	C	T	rs188717433		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DDX39A-226	NM_005804	exon9	c.G1010A	p.R337Q	ATCCGCCGCTGGA	.	114	29	71	0	C|0.999;T|0.000	0	0	0	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980172	18980172	+	Missense_Mutation	SNP	G	G	A	rs4808863	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GDF1-226	NM_001492	exon8	c.C353T	p.A118V	GCCGAGGCAGGCT	.	8	8	0	0	G|0.715;A|0.285	0	0	0	0	0
C19orf12	83636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	30199201	30199201	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C19orf12-204	NM_001031726	exon2	c.C153T	p.F51F	CCCGACGAAGGCC	.	85	15	43	0	.	0	0	0	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	rs11539586		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LRP3-92	NM_002333	exon7	c.C1850T	p.A617V	CGCGGGCGCCCCG	.	15	10	0	0	T|0.000;G|0.967	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	16	16	0	0	T|0.545;C|0.455	0	0	0	0	0
SPTBN4	57731	hgsc.bcm.edu	37	19	41025758	41025758	+	Silent	SNP	G	G	A	rs201389714		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SPTBN4-94	NM_020971	exon16	c.G3354A	p.L1118L	GCCCCTGCCCAAC	.	5	5	2	0	G|0.997;A|0.003	0	0	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	5	4	1	0	A|0.464;G|0.536	0	0	0	0	0
SHANK1	50944	broad.mit.edu	37	19	51215270	51215270	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SHANK1-153	NM_016148	exon6	c.G894T	p.E298D	GAGCAGCTCGCAG	.	222	9	158	1	.	0	0	0	0	0
SIGLEC5	8778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52132321	52132321	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SIGLEC5-92	NM_003830	exon4	c.C709T	p.Q237X	TGGTCTGTGGAGC	.	197	26	114	0	.	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	6	6	0	0	G|0.301;C|0.699	0	0	0	0	0
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31628802	31628802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	XDH-158	NM_000379	exon2	c.C71T	p.T24I	AGGGTTGTCTCTG	.	96	14	91	0	.	0	0	0	0	0
CRIM1	51232	broad.mit.edu	37	2	36706642	36706642	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CRIM1-118	NM_016441	exon7	c.C1177A	p.P393T	TTAGATCCAGTGT	.	111	15	46	1	.	0	0	0	0	0
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55566683	55566683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CCDC88A-94	NM_018084	exon13	c.C1435G	p.L479V	TCCGAAGCTCTTC	.	53	13	38	0	.	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	12	11	0	0	A|0.029;G|0.971	0	0	0	0	0
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	144381828	144381828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ARHGAP15-653	NM_018460	exon12	c.A1130G	p.E377G	TTGTGGAAGCGAT	.	118	13	73	0	.	0	0	0	0	0
RESP18	389075	broad.mit.edu	37	2	220197321	220197321	+	Missense_Mutation	SNP	C	C	T	rs2385405	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RESP18-90	NM_001007089	exon2	c.G157A	p.E53K	GCCCCTCGGAGCT	.	232	6	71	0	C|0.554;T|0.446	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	6	5	0	0	T|0.454;C|0.546	0	0	0	0	0
RSPO4	343637	bcgsc.ca	37	20	944746	944746	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RSPO4-90	NM_001029871	exon4	c.C427A	p.P143T	CCCAGGGACCCAG	.	53	4	60	0	.	0	0	0	0	0
ADAM33	80332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3652895	3652895	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAM33-291	NM_025220	exon14	c.T1483C	p.C495R	GGGGACAGTGGGA	.	166	39	142	0	.	0	0	0	0	0
ADAM33	80332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3652900	3652900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAM33-291	NM_025220	exon14	c.C1478G	p.S493C	CAGTGGGAGGAGG	.	168	37	145	0	.	0	0	0	0	0
RBM39	9584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34300947	34300947	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RBM39-91	NM_184234	exon12	c.G1168T	p.V390L	CTGCCACAGCACC	.	25	9	29	0	.	0	0	0	0	0
SOGA1	140710	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	35422018	35422020	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	GTT	GTT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_080627	exon14	c.4465_4467del	p.1489_1489del	TCCATCGTTGATG	.	68	13	80	0	.	0	0	0	0	0
TGM2	7052	broad.mit.edu;bcgsc.ca	37	20	36760743	36760743	+	Missense_Mutation	SNP	C	C	T	rs150712844		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TGM2-155	NM_004613	exon11	c.G1775A	p.R592Q	CTTACCCGGATCT	.	91	7	80	1	C|1.000;T|0.000	0	0	0	0	0
MAFB	9935	hgsc.bcm.edu	37	20	39317483	39317483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MAFB-846	NM_005461	exon1	c.C8A	p.A3E	AGCTCCGCGGCCA	.	66	4	11	0	.	0	0	0	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DNTTIP1-91	NM_052951	exon1	c.T39C	p.P13P	GGGACCTAGCGGG	.	7	7	0	0	T|0.311;C|0.689	0	0	0	0	0
ZMYND8	23613	ucsc.edu	37	20	45867852	45867852	+	Missense_Mutation	SNP	A	A	G	rs2275801	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZMYND8-252	NM_183047	exon15	c.T2315C	p.V772A	CTGCCCACCGTCG	.	51	15	16	3	A|0.741;C|0.002	0	0	0	0	0
ZBP1	81030	broad.mit.edu	37	20	56188152	56188152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZBP1-228	NM_001160419	exon5	c.G737T	p.G246V	CCTTTGCCCCCAC	.	22	4	28	0	.	0	0	0	0	0
LZTR1	8216	broad.mit.edu	37	22	21343966	21344002	+	In_Frame_Del	DEL	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	GAGGAGGTGAGGGGCGTGGGGAGCCAGGGCGCAGGTA	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	LZTR1-280	NM_006767	exon7	c.646_651del	p.216_217del	TGCTGGGAGGAGG	.	36	7	37	0	.	0	0	0	0	0
HIC2	23119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	21800327	21800327	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HIC2-703	NM_015094	exon3	c.G1143A	p.G381G	TAGTGGGGCTGGC	.	19	5	21	0	.	0	0	0	0	0
CABIN1	23523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24487724	24487724	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CABIN1-94	NM_001199281	exon24	c.A3713G	p.H1238R	ACCTGCACGAGGA	.	195	38	211	0	.	0	0	0	0	0
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26707835	26707835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SEZ6L-95	NM_021115	exon8	c.G1783A	p.D595N	ACCTGCGACCCCG	.	118	33	172	0	.	0	0	0	0	0
NEFH	4744	ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	200	60	235	1	A|0.500;T|0.500	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NEFH-90	NM_021076	exon4	c.1970_1975del	p.657_659del	CAGAGAAGGAAGA	.	206	30	246	0	.	0	0	0	0	0
TOM1	10043	ucsc.edu	37	22	35742925	35742925	+	Silent	SNP	T	T	G	rs743810	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TOM1-91	NM_001135732	exon14	c.T1287G	p.G429G	CCAGGGTAATGAT	.	48	5	65	3	T|0.655;G|0.345	0	0	0	0	0
CARD10	29775	hgsc.bcm.edu	37	22	37915145	37915145	+	Silent	SNP	C	C	T	rs79861380		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CARD10-662	NM_014550	exon1	c.G63A	p.E21E	CTCCGCCTCAGAC	.	42	6	4	0	C|0.935;T|0.065	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	9	9	0	0	A|0.354;G|0.646	0	0	0	0	0
CPNE9	151835	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9754512	9754512	+	Splice_Site	SNP	C	C	T	rs190521882	by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CPNE9-70	.	.	.	.	ATGGCACGTGAGT	.	79	14	108	0	C|0.999;T|0.000	0	0	0	0	0
PRRT3	285368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	9991595	9991596	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	TG	TG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PRRT3-90	NM_207351	exon2	c.204_205del	p.68_69del	TGTGACTGTCAGC	.	82	14	92	0	.	0	0	0	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554031	52554031	+	Silent	SNP	C	C	T	rs145377358		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	STAB1-139	NM_015136	exon51	c.C5307T	p.A1769A	AGACGCCGCCTTT	.	149	26	162	0	C|1.000;T|0.000	0	0	0	0	0
DNAH12	201625	bcgsc.ca	37	3	57494915	57494915	+	Missense_Mutation	SNP	G	G	T	rs115576589	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DNAH12-47	NM_198564	exon6	c.C494A	p.P165Q	TTAACTGGTGGTT	.	170	6	270	0	G|0.990;T|0.010	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	24	11	1	0	C|0.900;T|0.100	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959508	183959508	+	Silent	SNP	A	A	C	rs28606531	byfrequency;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_138345	exon19	c.A3411C	p.P1137P	GGGGCCAGGCCAG	.	13	10	0	0	A|0.927;C|0.073	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	203	71	72	9	.	0	0	0	0	0
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	30726021	30726021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PCDH7-229	NM_032457	exon1	c.G2977A	p.A993T	GACCTGGCAAGGC	.	105	9	84	0	.	0	0	0	0	0
DTHD1	401124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	36345151	36345151	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DTHD1-46	NM_001170700	exon9	c.G2051A	p.W684X	TCCATTGGCTGGC	.	75	18	60	0	.	0	0	0	0	0
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57889711	57889711	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	POLR2B-92	NM_000938	exon19	c.C2731A	p.L911I	GTAACTCTCAATC	.	78	13	74	0	.	0	0	0	0	0
ADH6	130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	100131302	100131302	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADH6-228	NM_000672	exon5	c.G504A	p.E168E	TACTTTCTCTAGA	.	88	17	63	0	.	0	0	0	0	0
SLC39A8	64116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	103180638	103180638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SLC39A8-90	NM_001135147	exon10	c.C1300G	p.Q434E	GAAGTTGAGATTT	.	73	19	75	0	.	0	0	0	0	0
DCHS2	54798	broad.mit.edu	37	4	155412464	155412464	+	Missense_Mutation	SNP	C	C	T	rs13149269	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DCHS2-94	NM_001142552	exon1	c.G44A	p.R15Q	GCCCGCCGCTGCT	.	159	6	65	1	C|0.652;N|0.001	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	13792259	13792259	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DNAH5-182	NM_001369	exon50	c.A8292G	p.T2764T	CAATTTTGTCACA	.	82	5	57	0	.	0	0	0	0	0
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34823555	34823555	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RAI14-91	NM_001145525	exon17	c.G1617A	p.K539K	GCTAAAGCAGGAT	.	117	18	90	0	.	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128977578	128977578	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ADAMTS19-295	NM_133638	exon11	c.C1779G	p.C593W	ATGGTGCAAGGTA	.	161	37	104	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	4	4	0	0	G|0.980;C|0.020	0	0	0	0	0
GEMIN5	25929	bcgsc.ca	37	5	154299581	154299581	+	Silent	SNP	A	A	G	rs61758976	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GEMIN5-228	NM_015465	exon11	c.T1545C	p.L515L	TCCACTAAGCTTC	.	164	7	129	0	A|0.990;G|0.010	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	10	10	0	0	A|0.006;G|0.994	0	0	0	0	0
RREB1	6239	hgsc.bcm.edu	37	6	7230680	7230680	+	Missense_Mutation	SNP	G	G	T	rs9502564	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	RREB1-144	NM_001003700	exon10	c.G2348T	p.G783V	GCGGGGGCCACAA	.	16	5	2	0	G|0.546;T|0.454	0	0	0	0	0
MAK	4117	broad.mit.edu	37	6	10796402	10796402	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MAK-335	NM_005906	exon9	c.G972C	p.L324L	ATCCGGCAGAGGC	.	108	3	91	1	.	0	0	0	0	0
KIF13A	63971	bcgsc.ca	37	6	17987327	17987327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KIF13A-137	NM_001105567	exon2	c.C104A	p.T35K	AGGACCGTTTGAT	.	187	6	125	0	.	0	0	0	0	0
HIST1H1A	3024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26017333	26017333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HIST1H1A-92	NM_005325	exon1	c.G628A	p.A210T	GTGCCGCTTTCTT	.	135	20	102	0	.	0	0	0	0	0
NKAPL	222698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28227192	28227192	+	Missense_Mutation	SNP	G	G	A	rs144318583	alternate_allele	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NKAPL-70	NM_001007531	exon1	c.G43A	p.G15S	ATCGTGGGCTCTC	.	194	46	133	0	G|1.000;T|0.000	0	0	0	0	0
C6orf136	221545	hgsc.bcm.edu	37	6	30615205	30615205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	C6orf136-90	NM_001161376	exon1	c.C197T	p.T66I	TTCCCACCTGTGC	.	17	13	1	0	.	0	0	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	15	11	1	0	T|0.441;C|0.559	0	0	0	0	0
TIAM2	26230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	155503406	155503406	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TIAM2-93	NM_012454	exon12	c.G2754T	p.R918R	CAGCCGGATATTT	.	203	48	135	1	.	0	0	0	0	0
SP8	221833	hgsc.bcm.edu;broad.mit.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SP8-91	NM_182700	exon2	c.493_495del	p.165_165del	GGAGGAGCCGCCG	.	48	17	9	0	.	0	0	0	0	0
GPNMB	10457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	23313809	23313809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GPNMB-580	NM_001005340	exon11	c.T1685C	p.L562P	ATCCGCTACTCAA	.	44	11	51	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	8	8	0	0	C|0.329;G|0.671	0	0	0	0	0
FZD9	8326	hgsc.bcm.edu	37	7	72848664	72848664	+	Silent	SNP	C	C	T	rs142125301	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FZD9-1082	NM_003508	exon1	c.C327T	p.P109P	CATTCCCGCCTGC	.	32	12	0	0	C|0.998;T|0.002	0	0	0	0	0
DBF4	10926	broad.mit.edu;bcgsc.ca	37	7	87529633	87529633	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	DBF4-253	NM_006716	exon9	c.778delA	p.S260fs	CCATCTAGTATGC	.	94	12	95	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	23	11	0	0	.	0	0	0	0	0
ZNF775	285971	hgsc.bcm.edu	37	7	150094851	150094851	+	Missense_Mutation	SNP	A	A	G	rs13225910		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZNF775-90	NM_173680	exon3	c.A1282G	p.T428A	CGGGACACGCTGT	.	9	9	2	0	A|0.578;G|0.422	0	0	0	0	0
MLL3	58508	broad.mit.edu	37	7	151843708	151843709	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	MLL3-1398	NM_170606	exon53	c.14006_14007del	p.4669_4669del	CACTGCAGAGACG	.	56	9	32	0	.	0	0	0	0	0
SLC20A2	6575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42317494	42317494	+	Missense_Mutation	SNP	T	T	C	rs142888552	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SLC20A2-92	NM_001257181	exon5	c.A533G	p.N178S	AGGCCATTGGGAA	.	106	27	117	0	T|0.999;C|0.001	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	14	14	0	0	.	0	0	0	0	0
POU5F1B	5462	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	128428589	128428589	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001159542	exon1	c.C478T	p.L160L	ATCACCCTGGGAT	.	53	5	48	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	4	4	0	0	A|0.118;G|0.882	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	15	7	1	0	C|0.707;T|0.293	0	0	0	0	0
KIAA1432	57589	broad.mit.edu	37	9	5765734	5765734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KIAA1432-90	NM_001135920	exon21	c.G3073T	p.V1025F	GAAAATGTTCCTG	.	138	7	147	2	.	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	15	6	0	0	G|0.572;C|0.428	0	0	0	0	0
ANKRD18B	441459	bcgsc.ca	37	9	33566234	33566234	+	Silent	SNP	C	C	T	rs79153255		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_001244752	exon13	c.C2289T	p.A763A	TATGGCCGAGAAG	.	80	5	76	0	T|1.000;|0.000	0	0	0	0	0
HDHD3	81932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	116135916	116135916	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	HDHD3-90	NM_031219	exon2	c.C719T	p.A240V	TCAAGGGCAGGCA	.	58	16	53	0	.	0	0	0	0	0
CACNA1B	774	hgsc.bcm.edu	37	9	140917779	140917779	+	Missense_Mutation	SNP	G	G	T	rs7873074	byfrequency	TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CACNA1B-138	NM_001243812	exon19	c.G2584T	p.A862S	ACCCCCGCGGCGG	.	5	5	0	0	G|0.601;T|0.399	0	0	0	0	0
SAT1	6303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23803894	23803894	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SAT1-554	NM_002970	exon6	c.C437T	p.S146F	GTGCTTCTGATCT	.	301	63	332	0	.	0	0	0	0	0
ZDHHC15	158866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	74649034	74649034	+	Splice_Site	SNP	C	C	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	ZDHHC15-132	NM_001146256	exon7	c.456-1G>C	.	TTAACCCTAAAAA	.	201	31	187	0	.	0	0	0	0	0
CENPI	2491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100400095	100400095	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	CENPI-130	NM_006733	exon16	c.G1608A	p.L536L	TAAACTGATCCAC	.	98	25	141	0	.	0	0	0	0	0
TAF7L	54457	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	100542523	100542523	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TAF7L-130	NM_024885	exon2	c.A267C	p.E89D	CTGGCTTTCACTC	.	422	77	439	2	.	0	0	0	0	0
NRK	203447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105142618	105142618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NRK-630	NM_198465	exon8	c.A622G	p.R208G	AATGGAAGAAGGA	.	131	28	103	0	.	0	0	0	0	0
SAGE1	55511	broad.mit.edu;ucsc.edu	37	X	134994108	134994108	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	SAGE1-133	NM_018666	exon18	c.G2517A	p.G839G	GTTTGGGCAAAGT	.	66	6	62	1	.	0	0	0	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46012219	46012220	+	In_Frame_Ins	INS	-	-	GGGGCGCAGCAGCTG	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	KRTAP10-6-90	NM_198688	exon1	c.147_148insCAGCTGCTGCGCCCC	p.P49delinsPSCCAP	GGGGGCCGGGGCG	.	90	11	21	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	258	9	313	0	.	0	0	0	0	0
PANX2	56666	broad.mit.edu	37	22	50617594	50617595	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	PANX2-131	NM_052839	exon3	c.1922_1923insC	p.G641fs	ACGGGGGCCCCCG	.	174	13	82	0	.	0	0	0	0	0
FZD1	8321	hgsc.bcm.edu	37	7	90894459	90894460	+	In_Frame_Ins	INS	-	-	CCG	rs139480179		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	FZD1-658	NM_003505	exon1	c.264_265insCCG	p.Q88delinsQP	GCAGCAACCGCCG	.	25	16	7	2	-|0.606;CCG|0.394	0	0	0	0	0
TUBAL3	79861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5436106	5436107	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	TUBAL3-91	NM_024803	exon4	c.G714T	p.V239F	CTGAACCACCAAT	.	354	16	246	0	.	0	0	0	0	0
KRTAP4-7	100132476	hgsc.bcm.edu	37	17	39240804	39240805	+	Missense_Mutation	DNP	CG	CG	AT	novel		TCGA-OR-A5KP-01A-11D-A30A-10	TCGA-OR-A5KP-10A-01D-A30A-10	CG	CG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f7581f1a-8a04-483a-a296-93bb72f8770d	c7c571ba-879c-4164-a608-bdbeeec0b9ee	.	.	NM_033061	exon1	c.G347T	p.R116I	GCTGCCGCCCCTG	.	125	0	37	0	.	0	0	0	0	0