Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MMEL1	79258	bcgsc.ca	37	1	2541269	2541269	+	Silent	SNP	A	A	G	rs10797440	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MMEL1-90	NM_033467	exon5	c.T294C	p.A98A	CCTGGCAGCTGCT	.	133	6	168	2	A|0.542;G|0.458	0	0	0	0	0
TNFRSF25	8718	hgsc.bcm.edu	37	1	6521701	6521701	+	Silent	SNP	C	C	T	rs149595085	bycluster;byfrequency;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TNFRSF25-714	NM_148965	exon10	c.G1074A	p.E358E	CACGAACTCCTTC	.	37	35	0	0	C|0.999;T|0.001	0	0	0	0	0
LRRC38	126755	bcgsc.ca	37	1	13802437	13802437	+	Silent	SNP	G	G	A	rs3013106	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001010847	exon2	c.C762T	p.S254S	CACACCGGAGAAA	.	250	7	363	4	A|0.323;C|0.008	0	0	0	0	0
CROCC	9696	hgsc.bcm.edu	37	1	17266514	17266514	+	Silent	SNP	C	C	T	rs141271666	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CROCC-137	NM_014675	exon13	c.C1734T	p.D578D	GACCGACGGCGCC	.	48	4	1	0	C|0.995;T|0.005	0	0	0	0	0
RPA2	6118	broad.mit.edu;bcgsc.ca	37	1	28240630	28240630	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RPA2-228	NM_002946	exon2	c.A61C	p.T21P	ACTGCGTGTAGCC	.	94	5	141	1	.	0	0	0	0	0
DMAP1	55929	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	44684101	44684101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DMAP1-226	NM_001034024	exon5	c.T512G	p.F171C	TGCGTTTTGTTGT	.	243	220	238	2	.	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271828	45271828	+	Silent	SNP	T	T	C	rs17885815	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TCTEX1D4-91	NM_001013632	exon2	c.A513G	p.V171V	ACTGCATACCAGC	.	4	4	0	0	T|0.859;C|0.141	0	0	0	0	0
RAD54L	8438	bcgsc.ca	37	1	46743900	46743900	+	Silent	SNP	C	C	T	rs1048771	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RAD54L-229	NM_003579	exon18	c.C2190T	p.A730A	CACTGCCATCACC	.	119	5	155	1	C|0.877;T|0.123	0	0	0	0	0
INADL	10207	bcgsc.ca	37	1	62261168	62261168	+	Missense_Mutation	SNP	A	A	G	rs7516332	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	INADL-94	NM_176877	exon10	c.A1198G	p.I400V	AAAAGTATAATAC	.	76	4	130	0	A|0.589;G|0.411	0	0	0	0	0
GBP2	2634	hgsc.bcm.edu;broad.mit.edu	37	1	89586906	89586912	+	Frame_Shift_Del	DEL	TCCAGAT	TCCAGAT	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TCCAGAT	TCCAGAT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GBP2-91	NM_004120	exon3	c.232_238del	p.78_80del	ACCACATCCAGAT	.	87	11	61	0	.	0	0	0	0	0
KPRP	448834	broad.mit.edu	37	1	152733496	152733496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KPRP-95	NM_001025231	exon2	c.C1432A	p.P478T	CCAGAGCCAATTC	.	35	4	14	0	.	0	0	0	0	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181727162	181727162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CACNA1E-95	NM_000721	exon31	c.G4409A	p.R1470H	AGTACCGCGTGTG	.	163	135	132	1	.	0	0	0	0	0
JMJD4	65094	hgsc.bcm.edu	37	1	227923081	227923081	+	Missense_Mutation	SNP	G	G	A	rs7419238		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	JMJD4-226	NM_023007	exon1	c.C32T	p.A11V	TGCCCCGCCAGCG	.	5	5	0	0	G|0.002;A|0.998	0	0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237754020	237754020	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RYR2-158	NM_001035	exon31	c.C3888T	p.N1296N	CAGCAACACTGAT	.	78	4	79	0	.	0	0	0	0	0
FMN2	56776	mdanderson.org	37	1	240371151	240371151	+	Silent	SNP	T	T	A	rs71646892	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	FMN2-145	NM_020066	exon5	c.T3039A	p.P1013P	TCCCCCTCTTCCC	.	26	8	28	2	T|0.962;A|0.038	0	0	0	0	0
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247587530	247587530	+	Missense_Mutation	SNP	G	G	A	rs180177443	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NLRP3-674	NM_183395	exon3	c.G785A	p.R262Q	ACTGTCGAGAGGT	.	90	16	106	0	.	0	0	0	0	0
OR2M3	127062	bcgsc.ca	37	1	248366792	248366792	+	Silent	SNP	T	T	C	rs12562957	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	OR2M3-70	NM_001004689	exon1	c.T423C	p.C141C	AATTTGTGGACTT	.	283	8	272	1	T|0.828;C|0.172	0	0	0	0	0
SVIL	6840	bcgsc.ca	37	10	29821523	29821523	+	Silent	SNP	T	T	C	rs1328323	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SVIL-96	NM_021738	exon8	c.A1773G	p.K591K	AGAGACTTTTGTG	.	135	5	178	1	C|0.381;G|0.000;T|0.619	0	0	0	0	0
SFTPD	6441	bcgsc.ca	37	10	81706324	81706324	+	Missense_Mutation	SNP	A	A	G	rs721917	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SFTPD-91	NM_003019	exon2	c.T92C	p.M31T	CTGGGCATTGTTC	.	99	5	127	0	A|0.559;G|0.441	0	0	0	0	0
HECTD2	143279	hgsc.bcm.edu	37	10	93170250	93170250	+	Missense_Mutation	SNP	C	C	G	rs7081569	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HECTD2-658	NM_182765	exon1	c.C55G	p.P19A	GCGGCGCCCGCGC	.	6	6	0	0	C|0.154;G|0.846	0	0	0	0	0
NOC3L	64318	broad.mit.edu	37	10	96109888	96109888	+	Missense_Mutation	SNP	C	C	T	rs149695235	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NOC3L-91	NM_022451	exon9	c.G1110A	p.M370I	GTCATTCATGAGA	.	136	4	137	0	C|0.998;T|0.002	0	0	0	0	0
LZTS2	84445	broad.mit.edu	37	10	102766682	102766682	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LZTS2-155	NM_032429	exon5	c.T1767G	p.G589G	GCGGGGTGAGGAG	.	104	26	17	0	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093312	1093312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MUC2-90	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	152	11	115	3	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093375	1093375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MUC2-90	NM_002457	exon30	c.C5194T	p.P1732S	GTGACCCCAACCC	.	172	14	132	2	.	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651157	1651157	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KRTAP5-5-23	NM_001001480	exon1	c.87delA	p.G29fs	CTGTGGAGGCTGT	.	114	7	5	0	.	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651159	1651169	+	Frame_Shift_Del	DEL	GCTGTGGCTCT	GCTGTGGCTCT	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KRTAP5-5-23	NM_001001480	exon1	c.89_99del	p.30_33del	GTGGAGGCTGTGG	.	110	7	5	0	.	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	19	19	0	0	C|0.602;T|0.398	0	0	0	0	0
OR52R1	119695	bcgsc.ca	37	11	4825349	4825349	+	Missense_Mutation	SNP	A	A	G	rs17327254	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	OR52R1-69	NM_001005177	exon1	c.T262C	p.F88L	ACCAGAATATGGC	.	195	7	210	2	A|0.937;G|0.063	0	0	0	0	0
OR52E2	119678	bcgsc.ca	37	11	5080844	5080844	+	Missense_Mutation	SNP	T	T	C	rs16909440	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	OR52E2-71	NM_001005164	exon1	c.A14G	p.N5S	GTGTCATTGGGAA	.	96	6	115	0	C|0.306;N|0.000	0	0	0	0	0
WT1	7490	hgsc.bcm.edu	37	11	32456694	32456694	+	Silent	SNP	C	C	A	rs2234582	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	WT1-6891	NM_024424	exon1	c.G198T	p.P66P	TTGCTGCGGCTCA	.	6	4	0	0	C|0.748;A|0.252	0	0	0	0	0
CKAP5	9793	bcgsc.ca	37	11	46784697	46784697	+	Silent	SNP	A	A	C	rs7928445	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CKAP5-92	NM_001008938	exon30	c.T3720G	p.G1240G	CAGGCAACCAATA	.	84	5	136	0	A|0.851;C|0.149	0	0	0	0	0
OR5M11	219487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56310261	56310261	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001005245	exon1	c.A473G	p.Q158R	ATGGCCTGGAAGA	.	120	38	169	0	.	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TM7SF2-91	NM_003273	exon2	c.G156C	p.P52P	CCTGCCGGGGCTG	.	4	4	0	0	G|0.005;C|0.995	0	0	0	0	0
RHOD	29984	ucsc.edu	37	11	66834252	66834252	+	Silent	SNP	C	C	T	rs2282502	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RHOD-659	NM_014578	exon3	c.C264T	p.D88D	CCCTGACGCCAGC	.	53	6	84	1	C|0.683;G|0.000;T|0.317	0	0	0	0	0
UNC93B1	81622	broad.mit.edu	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	.	.	.	.	CAGGGCACTGCCC	.	77	7	82	1	.	0	0	0	0	0
ARHGAP20	57569	bcgsc.ca	37	11	110450453	110450453	+	Missense_Mutation	SNP	G	G	T	rs149514977	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ARHGAP20-230	NM_020809	exon16	c.C3217A	p.P1073T	GGGGTGGCTCTAA	.	65	4	48	0	G|1.000;C|0.000	0	0	0	0	0
DRD2	1813	bcgsc.ca	37	11	113283459	113283459	+	Silent	SNP	G	G	A	rs6277	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DRD2-92	NM_000795	exon7	c.C957T	p.P319P	GCTGTCGGGAGTG	.	158	7	186	0	G|0.641;A|0.359	0	0	0	0	0
NCAPD2	9918	bcgsc.ca	37	12	6632430	6632430	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NCAPD2-660	NM_014865	exon17	c.C2132A	p.A711D	ACAGAGCCAAGGC	.	66	4	66	0	.	0	0	0	0	0
RERG	85004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	15262053	15262053	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RERG-659	NM_032918	exon5	c.C591T	p.I197I	ACTACTGATTTTG	.	342	57	163	0	.	0	0	0	0	0
NFE2	4778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54686624	54686624	+	Missense_Mutation	SNP	C	C	T	rs139796996		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NFE2-226	NM_001261461	exon4	c.G656A	p.R219Q	TCCCCCCGTGCAG	.	164	45	161	0	C|1.000;T|0.000	0	0	0	0	0
C12orf29	91298	hgsc.bcm.edu;bcgsc.ca	37	12	88434018	88434020	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TGT	TGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	C12orf29-90	NM_001009894	exon2	c.184_186del	p.62_62del	GGAACATGTTGTT	.	485	172	259	2	.	0	0	0	0	0
TMEM132C	92293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	128900026	128900026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TMEM132C-68	NM_001136103	exon2	c.G835A	p.D279N	GCCCAGGACAGCG	.	652	144	242	0	.	0	0	0	0	0
GPC5	2262	bcgsc.ca	37	13	92345579	92345579	+	Missense_Mutation	SNP	C	C	T	rs553717	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GPC5-519	NM_004466	exon3	c.C464T	p.A155V	TTGGTGCGGATGT	.	110	5	84	0	T|0.121;G|0.170	0	0	0	0	0
RBM23	55147	broad.mit.edu	37	14	23374128	23374128	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RBM23-91	NM_001077351	exon9	c.A820G	p.I274V	CAGTGATATTGAA	.	109	4	143	1	.	0	0	0	0	0
TMEM63C	57156	bcgsc.ca	37	14	77708804	77708804	+	Silent	SNP	C	C	T	rs61731611	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_020431	exon14	c.C1179T	p.D393D	CAAAGACATTATT	.	139	8	171	2	C|0.813;T|0.187	0	0	0	0	0
AHNAK2	113146	bcgsc.ca	37	14	105410183	105410183	+	Missense_Mutation	SNP	T	T	C	rs10438246	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AHNAK2-47	NM_138420	exon7	c.A11605G	p.M3869V	GTTTCATGTCCAC	.	212	10	249	3	T|0.456;C|0.544	0	0	0	0	0
AHNAK2	113146	bcgsc.ca	37	14	105416010	105416010	+	Silent	SNP	T	T	C	rs2582511	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AHNAK2-47	NM_138420	exon7	c.A5778G	p.T1926T	AACATCTGTCTGG	.	153	7	125	0	T|0.428;C|0.572	0	0	0	0	0
DMXL2	23312	broad.mit.edu	37	15	51756879	51756879	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DMXL2-99	NM_001174116	exon32	c.C7801A	p.P2601T	TGAATGGGGTATT	.	70	3	52	0	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	6	6	0	0	A|0.226;C|0.774	0	0	0	0	0
MTFMT	123263	hgsc.bcm.edu	37	15	65321780	65321780	+	Missense_Mutation	SNP	A	A	T	rs188718836		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MTFMT-24	NM_139242	exon1	c.T172A	p.F58I	GGGCGAACTGGTC	.	20	18	0	0	A|0.995;T|0.005	0	0	0	0	0
HAPLN3	145864	bcgsc.ca	37	15	89430506	89430506	+	Silent	SNP	C	C	T	rs3743395	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HAPLN3-90	NM_178232	exon2	c.G24A	p.P8P	GAGCAACGGGACC	.	119	5	206	2	C|0.770;T|0.230	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	8	8	0	0	C|0.615;G|0.385	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	5	5	0	0	T|0.007;C|0.993	0	0	0	0	0
C16orf71	146562	bcgsc.ca	37	16	4797457	4797457	+	Missense_Mutation	SNP	C	C	T	rs17853375	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	C16orf71-68	NM_139170	exon9	c.C1394T	p.P465L	AGGCCCCTGAAGA	.	188	6	99	1	C|0.555;G|0.000;T|0.445	0	0	0	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	10	10	0	0	C|0.218;G|0.782	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0
TAF1C	9013	ucsc.edu	37	16	84213114	84213114	+	Silent	SNP	C	C	T	rs2230130	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TAF1C-91	NM_005679	exon14	c.G2043A	p.V681V	GCGGAGCACACCC	.	64	22	11	1	C|0.709;T|0.291	0	0	0	0	0
OVCA2	124641	hgsc.bcm.edu	37	17	1945354	1945354	+	Silent	SNP	C	C	A	rs145234879		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_080822	exon1	c.C13A	p.R5R	GCGCAGCGACCCC	.	18	17	0	0	C|0.991;A|0.009	0	0	0	0	0
ZZEF1	23140	bcgsc.ca	37	17	3916823	3916823	+	Silent	SNP	G	G	A	rs8075562	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZZEF1-93	NM_015113	exon52	c.C8499T	p.G2833G	GGCCACGCCCACC	.	76	5	100	0	G|0.778;A|0.222	0	0	0	0	0
CDRT15L2	256223	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	20483953	20483953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001190790	exon2	c.C757T	p.R253C	CTCAGACGCAATC	.	135	111	226	0	.	0	0	0	0	0
VTN	7448	broad.mit.edu	37	17	26694766	26694766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	VTN-227	NM_000638	exon7	c.C1294A	p.P432T	GGATGGGTTCACA	.	60	9	59	4	.	0	0	0	0	0
RNF135	84282	hgsc.bcm.edu	37	17	29298390	29298390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RNF135-227	NM_197939	exon1	c.A299G	p.H100R	CTGCCCACTGCCC	.	6	6	0	0	.	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_031960	exon1	c.T283A	p.C95S	AGATGCAGCAGCT	.	121	21	17	1	A|0.500;T|0.500	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_033059	exon1	c.C481G	p.L161V	GACGCAGGCAGCA	.	159	23	48	1	G|0.500;C|0.500	0	0	0	0	0
CDC27	996	hgsc.bcm.edu;bcgsc.ca	37	17	45234327	45234327	+	Missense_Mutation	SNP	C	C	T	rs7350889	bycluster	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CDC27-291	NM_001114091	exon7	c.G794A	p.G265D	CTTCGACCAGTTT	.	28	5	45	0	C|1.000;|0.000	0	0	0	0	0
KPNA2	3838	bcgsc.ca	37	17	66039350	66039350	+	Silent	SNP	A	A	G	rs4638	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KPNA2-560	NM_002266	exon7	c.A801G	p.V267V	AGAAGTATTAGCA	.	57	4	102	0	A|0.406;G|0.594	0	0	0	0	0
EMILIN2	84034	bcgsc.ca	37	18	2885118	2885118	+	Silent	SNP	C	C	T	rs592120	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	EMILIN2-93	NM_032048	exon3	c.C414T	p.N138N	TCGAAACAGCTTG	.	59	6	105	1	C|0.763;T|0.237	0	0	0	0	0
TWSG1	57045	hgsc.bcm.edu	37	18	9399488	9399488	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TWSG1-92	NM_020648	exon5	c.G635T	p.G212V	ACTATGGTAGTAA	.	51	4	85	0	.	0	0	0	0	0
ST8SIA5	29906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44260305	44260305	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ST8SIA5-517	NM_013305	exon7	c.C831T	p.F277F	CGGATGGAAGTAG	.	203	81	124	2	.	0	0	0	0	0
CDH7	1005	bcgsc.ca	37	18	63511176	63511176	+	Silent	SNP	T	T	C	rs2306675	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CDH7-94	NM_004361	exon7	c.T1110C	p.D370D	GGAAGATGTAGAT	.	210	6	189	2	T|0.756;C|0.244	0	0	0	0	0
CCDC102B	79839	broad.mit.edu;ucsc.edu	37	18	66721363	66721363	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CCDC102B-93	NM_001093729	exon10	c.C1531T	p.Q511X	CACTTGCAAAACT	.	12	5	12	0	.	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	9	9	0	0	A|0.114;G|0.886	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1003374	1003374	+	Silent	SNP	G	G	A	rs34585248		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GRIN3B-90	NM_138690	exon2	c.G672A	p.A224A	GGCGGCGCCAGTG	.	21	15	0	0	G|0.966;A|0.034	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1004687	1004687	+	Missense_Mutation	SNP	T	T	C	rs12978900	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GRIN3B-90	NM_138690	exon3	c.T1187C	p.L396S	TGGACTTGGAACC	.	40	18	0	0	T|0.967;C|0.033	0	0	0	0	0
TMEM259	91304	hgsc.bcm.edu	37	19	1010673	1010673	+	Silent	SNP	G	G	A	rs11540362		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001033026	exon11	c.C1539T	p.P513P	AGGCCCGGGACTC	.	8	7	0	0	T|0.037;C|0.963	0	0	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TCF3-721	NM_003200	exon15	c.A1302G	p.S434S	GCCCAGTGACATG	.	4	4	0	0	T|0.403;C|0.597	0	0	0	0	0
CHAF1A	10036	bcgsc.ca	37	19	4428809	4428809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CHAF1A-92	NM_005483	exon8	c.T1526C	p.L509S	CCTTCTTGAAAGA	.	52	4	75	0	.	0	0	0	0	0
HDGFRP2	0	hgsc.bcm.edu	37	19	4499666	4499680	+	In_Frame_Del	DEL	TGGCCGGGGAGGAGG	TGGCCGGGGAGGAGG	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	TGGCCGGGGAGGAGG	TGGCCGGGGAGGAGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_032631	exon15	c.1739_1753del	p.580_585del	AGGAGCTGGCCGG	.	25	15	12	0	.	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	16	15	0	0	C|0.788;T|0.212	0	0	0	0	0
MUC16	94025	bcgsc.ca	37	19	9086318	9086318	+	Missense_Mutation	SNP	G	G	A	rs4520945	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MUC16-566	NM_024690	exon1	c.C5497T	p.L1833F	GAGTGAGAGAAAT	.	143	5	141	0	G|0.812;A|0.188	0	0	0	0	0
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	16338981	16338981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AP1M1-156	NM_001130524	exon9	c.G886A	p.E296K	GTGATCGAGAAGC	.	137	27	86	0	.	0	0	0	0	0
LSM14A	26065	broad.mit.edu	37	19	34710315	34710315	+	Silent	SNP	T	T	G	rs201741862		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LSM14A-91	NM_001114093	exon7	c.T801G	p.A267A	TTCAGCTCCAAGG	.	84	5	68	1	T|0.999;G|0.001	0	0	0	0	0
CYP2A13	1553	hgsc.bcm.edu	37	19	41596013	41596013	+	Silent	SNP	A	A	G	rs199984436		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CYP2A13-93	NM_000766	exon3	c.A405G	p.L135L	CACCCTAAGGGGT	.	215	11	22	0	A|0.999;G|0.001	0	0	0	0	0
CEACAM1	634	bcgsc.ca	37	19	43031407	43031407	+	Silent	SNP	C	C	G	rs79326931	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CEACAM1-515	NM_001184816	exon2	c.G210C	p.G70G	TCTTTCCCCTTTG	.	563	48	357	8	C|0.939;G|0.061	0	0	0	0	0
CEACAM1	634	bcgsc.ca	37	19	43031434	43031434	+	Missense_Mutation	SNP	T	T	A	rs140316654	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CEACAM1-515	NM_001184816	exon2	c.A183T	p.Q61H	AAAAAGTTGCTGG	.	511	36	316	6	T|0.979;A|0.021	0	0	0	0	0
APOE	348	hgsc.bcm.edu	37	19	45411941	45411941	+	Missense_Mutation	SNP	T	T	C	rs429358	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	APOE-90	NM_000041	exon4	c.T388C	p.C130R	GACGTGTGCGGCC	.	21	8	2	0	T|0.861;C|0.139	0	0	0	0	0
CLASRP	11129	hgsc.bcm.edu	37	19	45567668	45567668	+	Missense_Mutation	SNP	C	C	A	rs71352251		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CLASRP-154	NM_007056	exon13	c.C1189A	p.R397S	AGCTCTCGCTCCA	.	26	13	0	0	C|0.996;A|0.004	0	0	0	0	0
ZNF610	162963	bcgsc.ca	37	19	52856955	52856955	+	Silent	SNP	C	C	T	rs1961205	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZNF610-93	NM_001161427	exon4	c.C84T	p.D28D	CATGGACGTGGCC	.	65	5	48	0	C|0.610;T|0.390	0	0	0	0	0
NAT14	57106	hgsc.bcm.edu	37	19	55998262	55998262	+	Missense_Mutation	SNP	C	C	T	rs77664073	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NAT14-91	NM_020378	exon3	c.C560T	p.A187V	ACCAGGCCGAGGG	.	10	6	2	0	C|0.873;T|0.127	0	0	0	0	0
ZSCAN1	284312	hgsc.bcm.edu	37	19	58549354	58549354	+	Silent	SNP	C	C	T	rs113374422	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZSCAN1-92	NM_182572	exon3	c.C150T	p.S50S	GGCGAGCGGGCCG	.	41	29	0	0	C|0.975;T|0.025	0	0	0	0	0
ANKRD36B	57730	bcgsc.ca	37	2	98129815	98129815	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_025190	exon38	c.A2633C	p.Q878P	TCTTGCTGTATGG	.	249	27	238	6	.	0	0	0	0	0
RGPD4	285190	broad.mit.edu	37	2	108475928	108475928	+	Missense_Mutation	SNP	C	C	T	rs2912841		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	RGPD4-2	NM_182588	exon11	c.C1552T	p.L518F	CTGCCCCTTCCTG	.	187	6	256	0	.	0	0	0	0	0
CLK1	1195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201726549	201726549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CLK1-784	NM_001162407	exon2	c.G163A	p.D55N	TGTCATCCCAATC	.	177	63	112	0	.	0	0	0	0	0
COL6A3	1293	bcgsc.ca	37	2	238243464	238243464	+	Missense_Mutation	SNP	C	C	G	rs2270669	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	COL6A3-526	NM_004369	exon41	c.G9034C	p.A3012P	GCTCAGCCCTCTC	.	190	7	176	1	C|0.334;G|0.666	0	0	0	0	0
COL6A3	1293	bcgsc.ca	37	2	238249630	238249630	+	Silent	SNP	C	C	T	rs4433949	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	COL6A3-526	NM_004369	exon38	c.G7929A	p.A2643A	CAGGTACGCTATG	.	187	12	165	1	C|0.625;T|0.375	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	9	4	0	0	T|0.454;C|0.546	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278690	+	In_Frame_Del	DEL	CGG	CGG	-	rs5839848	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	CGG	CGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZCCHC3-90	NM_033089	exon1	c.461_463del	p.154_155del	ATGAGCCGGCGGC	.	14	14	0	0	.	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	5	5	0	0	G|0.122;C|0.878	0	0	0	0	0
IFT52	51098	bcgsc.ca	37	20	42264653	42264653	+	Silent	SNP	G	G	A	rs41296223	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	IFT52-92	NM_016004	exon11	c.G1011A	p.A337A	GCCTGCGGTGAGT	.	54	4	97	0	G|0.975;A|0.025	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	10	7	1	0	C|0.802;G|0.198	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	13	10	1	0	G|0.803;A|0.197	0	0	0	0	0
COL6A2	1292	hgsc.bcm.edu	37	21	47532288	47532288	+	Missense_Mutation	SNP	G	G	A	rs200710788		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	COL6A2-515	NM_058175	exon3	c.G511A	p.G171R	CCCTGCGGGGGCA	.	17	15	0	0	.	0	0	0	0	0
SNAP29	9342	bcgsc.ca	37	22	21213416	21213416	+	Silent	SNP	A	A	G	rs1061064	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SNAP29-278	NM_004782	exon1	c.A18G	p.K6K	CCCTAAAAGCTAC	.	188	6	66	0	A|0.600;G|0.400	0	0	0	0	0
TGFBR2	7048	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30713517	30713517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TGFBR2-1698	NM_001024847	exon5	c.A917G	p.Y306C	TTCCCTATGAGGA	.	356	208	202	1	.	0	0	0	0	0
CCR2	729230	broad.mit.edu	37	3	46400062	46400062	+	Silent	SNP	G	G	A	rs3092960	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CCR2-568	NM_001123396	exon2	c.G1044A	p.T348T	AAACACGCCTTCC	.	86	5	58	0	G|0.929;A|0.071	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	4	4	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	4	4	0	0	G|0.252;C|0.748	0	0	0	0	0
CHST13	166012	hgsc.bcm.edu	37	3	126260995	126260995	+	Silent	SNP	C	C	T	rs7614066	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CHST13-90	NM_152889	exon3	c.C600T	p.Y200Y	GCGCTACGGTGCA	.	12	7	0	0	C|0.956;T|0.044	0	0	0	0	0
EEFSEC	60678	hgsc.bcm.edu	37	3	127872494	127872494	+	Silent	SNP	G	G	T	rs148745324	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	EEFSEC-91	NM_021937	exon1	c.G144T	p.T48T	CATCACGCTCGAT	.	37	18	2	0	G|0.996;T|0.004	0	0	0	0	0
DNAJC13	23317	bcgsc.ca	37	3	132166266	132166266	+	Silent	SNP	T	T	G	rs11917172	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DNAJC13-272	NM_015268	exon4	c.T246G	p.T82T	AGAAACTTTAAAA	.	307	8	176	0	T|0.900;G|0.100	0	0	0	0	0
YEATS2	55689	broad.mit.edu;bcgsc.ca	37	3	183469993	183469993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	YEATS2-138	NM_018023	exon10	c.C1102T	p.P368S	TCTTCACCAATAA	.	146	6	180	1	.	0	0	0	0	0
TBC1D1	23216	hgsc.bcm.edu	37	4	38016372	38016372	+	Silent	SNP	G	G	A	rs61731587		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TBC1D1-91	NM_015173	exon3	c.G660A	p.A220A	TGCCGCGCCCACA	.	31	23	0	0	G|0.968;A|0.032	0	0	0	0	0
SHROOM3	57619	bcgsc.ca	37	4	77660731	77660731	+	Missense_Mutation	SNP	C	C	G	rs344141	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SHROOM3-93	NM_020859	exon5	c.C1405G	p.P469A	ATCTACCCGGTAC	.	214	7	135	1	C|0.486;G|0.514	0	0	0	0	0
HELQ	113510	broad.mit.edu	37	4	84376805	84376806	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HELQ-155	NM_133636	exon1	c.41_42del	p.14_14del	TTTGGGGAGAGAC	.	53	12	30	0	.	0	0	0	0	0
NUDT9	53343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88379078	88379078	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NUDT9-90	NM_024047	exon8	c.C958G	p.L320V	CTGAAGCTTTATG	.	193	41	165	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	DSPP-90	NM_014208	exon5	c.C3213T	p.D1071D	CAGTGACAGCAGT	.	1036	35	543	10	.	0	0	0	0	0
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	185339341	185339341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	IRF2-91	NM_002199	exon5	c.G391A	p.D131N	CTTTGTCTTCTTT	.	120	32	135	0	.	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	194841	194841	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LRRC14B-69	NM_001080478	exon2	c.G918A	p.L306L	CCCGCTGCGAGTA	.	411	120	180	0	.	0	0	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109838	98109838	+	Missense_Mutation	SNP	A	A	C	rs2662263		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_001012761	exon3	c.A187C	p.S63R	CGCCGCAGCCCCG	.	4	4	0	0	T|0.046;G|0.950	0	0	0	0	0
NIPAL4	348938	broad.mit.edu;bcgsc.ca	37	5	156899408	156899408	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NIPAL4-68	NM_001099287	exon6	c.T841C	p.Y281H	CCACGTTACGGGC	.	72	33	50	1	.	0	0	0	0	0
BTNL3	10917	bcgsc.ca	37	5	180432416	180432416	+	Silent	SNP	C	C	T	rs78885278		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_197975	exon8	c.C945T	p.P315P	AGCTCCCCAGGAG	.	206	8	219	0	T|1.000;|0.000	0	0	0	0	0
OR2J2	26707	bcgsc.ca	37	6	29141849	29141849	+	Missense_Mutation	SNP	T	T	C	rs3116856	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	OR2J2-68	NM_030905	exon1	c.T437C	p.V146A	TGTTGGTTGCGGC	.	206	6	254	3	T|0.566;C|0.434	0	0	0	0	0
HCG9	10255	broad.mit.edu	37	6	29943178	29943178	+	RNA	SNP	A	A	G	rs6903753	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HCG9-68	.	.	.	.	GATGTGACTGCCT	.	174	7	154	2	A|0.714;G|0.286	0	0	0	0	0
MUC21	394263	bcgsc.ca	37	6	30954659	30954659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	MUC21-92	NM_001010909	exon2	c.G707A	p.G236E	CCAGTGGGGCCAG	.	140	10	153	2	.	0	0	0	0	0
FGD2	221472	bcgsc.ca	37	6	36976637	36976637	+	Missense_Mutation	SNP	G	G	C	rs831510	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	FGD2-229	NM_173558	exon2	c.G96C	p.Q32H	AGGCCAGAGGCTA	.	235	8	260	3	G|0.699;C|0.301	0	0	0	0	0
SLC17A5	26503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	74345205	74345205	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SLC17A5-190	NM_012434	exon6	c.G719A	p.W240X	AGAAACCAAAATA	.	9	9	12	0	.	0	0	0	0	0
FAM46A	55603	broad.mit.edu	37	6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	FAM46A-90	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	142	42	10	0	.	0	0	0	0	0
HEBP2	23593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	138726347	138726347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	HEBP2-90	NM_014320	exon2	c.G168A	p.M56I	GTCTATGGACTGG	.	81	29	105	0	.	0	0	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	76	7	45	0	.	0	0	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871097	170871097	+	Silent	SNP	G	G	A	rs200496051		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	TBP-91	NM_003194	exon3	c.G273A	p.Q91Q	GCAGCAGCAGCAG	.	132	9	92	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	7	7	0	0	C|0.329;G|0.671	0	0	0	0	0
PABPC1	26986	broad.mit.edu	37	8	101724606	101724606	+	Missense_Mutation	SNP	G	G	A	rs202060459		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	PABPC1-68	NM_002568	exon7	c.C956T	p.T319I	GTGATTGTACCAA	.	148	6	125	1	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	11	11	0	0	.	0	0	0	0	0
KCNQ3	3786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133144473	133144473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KCNQ3-138	NM_004519	exon14	c.T1838A	p.I613N	TCTTCGATTTCTG	.	135	56	79	0	.	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	6	6	0	0	G|0.992;C|0.006	0	0	0	0	0
AQP7	364	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	33386976	33386976	+	Missense_Mutation	SNP	G	G	A	rs143391243	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AQP7-90	NM_001170	exon4	c.C259T	p.R87C	AGATGCGGCCTGC	.	242	33	237	0	G|0.999;A|0.001	0	0	0	0	0
AKNA	80709	bcgsc.ca	37	9	117124731	117124731	+	Missense_Mutation	SNP	G	G	A	rs3748176	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	AKNA-94	NM_030767	exon8	c.C1871T	p.P624L	GCAAGCGGCTGGG	.	54	4	40	0	G|0.599;A|0.401	0	0	0	0	0
ASTN2	23245	broad.mit.edu	37	9	119448979	119448979	+	Missense_Mutation	SNP	C	C	T	rs10983304	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	ASTN2-161	NM_198186	exon1	c.G106A	p.E36K	TACCTTCAGTCTG	.	121	4	71	0	C|0.979;T|0.021	0	0	0	0	0
SLC38A5	92745	bcgsc.ca	37	X	48317386	48317386	+	Missense_Mutation	SNP	A	A	G	rs17281188	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SLC38A5-133	NM_033518	exon17	c.T1352C	p.M451T	ACGGCCATGAAGA	.	239	10	244	2	A|0.906;0|0.027	0	0	0	0	0
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NUDT11-130	NM_018159	wholegene			ACTTCATCCTCGA	.	221	66	20	0	.	0	0	0	0	0
SLC7A3	84889	bcgsc.ca	37	X	70146475	70146475	+	Missense_Mutation	SNP	G	G	C	rs6525447	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	SLC7A3-132	NM_032803	exon10	c.C1522G	p.L508V	TCCACAGCAGGTC	.	221	7	147	1	0|0.018;C|0.306	0	0	0	0	0
CTAG2	30848	bcgsc.ca	37	X	153881525	153881525	+	Missense_Mutation	SNP	G	G	C	rs17328091	byfrequency	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CTAG2-131	NM_020994	exon1	c.C265G	p.Q89E	ACAACTGAAGCAG	.	221	10	84	0	0|0.004;C|0.526	0	0	0	0	0
KCNN3	3782	broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCT	rs3831942	alternate_allele	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	KCNN3-91	NM_001204087	exon1	c.242_243insAGCAGCAGC	p.P81delinsQQQP	TGCGGTGGCTGCT	.	116	40	28	0	.	0	0	0	0	0
NDUFB5	4711	broad.mit.edu	37	3	179322628	179322629	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	NDUFB5-91	NM_001199958	exon1	c.25_26insG	p.R9fs	TTGCGGCGGGTTT	.	107	7	79	0	.	0	0	0	0	0
CCDC132	55610	broad.mit.edu	37	7	92923947	92923948	+	Frame_Shift_Ins	INS	-	-	G	rs140810598	bycluster;by1000genomes	TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	CCDC132-90	NM_017667	exon14	c.1166_1167insG	p.Q389fs	TATGGCAGGTTTG	.	236	37	122	0	.	0	0	0	0	0
LMX1B	4010	broad.mit.edu	37	9	129376842	129376843	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5KS-01A-11D-A30A-10	TCGA-OR-A5KS-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	66cd2c9e-018a-45ed-bc81-96e043cf32cb	325dd1e8-4b64-4e67-a7e0-4496272625cd	.	LMX1B-90	NM_002316	exon1	c.114_115insC	p.G38fs	CCCCGGGCCCGCC	.	104	8	5	0	.	0	0	0	0	0