Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 CCNL2 81669 broad.mit.edu;bcgsc.ca 37 1 1334591 1334591 + Silent SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CCNL2-70 NM_030937 exon1 c.G96T p.S32S CCCCTGCGACCCT . 71 39 57 1 . 0 0 0 0 0 C1orf158 93190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 12815709 12815709 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C1orf158-92 NM_152290 exon2 c.C171A p.F57L CCCCTTCCCAGAC . 354 162 340 1 . 0 0 0 0 0 NIPAL3 57185 broad.mit.edu 37 1 24766704 24766704 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NIPAL3-90 NM_020448 exon3 c.G136T p.V46L CACCTCGTGGTCA . 127 4 85 1 . 0 0 0 0 0 TRNP1 388610 hgsc.bcm.edu 37 1 27320356 27320356 + Missense_Mutation SNP T T C rs6689941 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TRNP1-44 NM_001013642 exon1 c.T79C p.W27R CCGCCCTGGGATC . 4 4 0 0 T|0.030;C|0.970 0 0 0 0 0 MACF1 23499 ucsc.edu;bcgsc.ca;mdanderson.org 37 1 39851188 39851188 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MACF1-165 NM_012090 exon53 c.G7745T p.G2582V GCCCTGGAGATGT . 166 65 172 2 . 0 0 0 0 0 RPRD2 23248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 150443166 150443166 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RPRD2-23 NM_015203 exon11 c.G1742A p.S581N CCTCCAGTGCCCA . 80 40 66 0 . 0 0 0 0 0 INTS3 65123 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 153721204 153721204 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . INTS3-93 NM_023015 exon6 c.G557C p.S186T CAGAAAGTGTTCT . 197 55 129 2 . 0 0 0 0 0 KCNN3 3782 hgsc.bcm.edu 37 1 154842250 154842250 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KCNN3-91 NM_001204087 exon1 c.C191A p.P64Q AGCTGCGGAGGCT . 60 11 14 0 . 0 0 0 0 0 HAPLN2 60484 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156593357 156593357 + Silent SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HAPLN2-90 NM_021817 exon3 c.A75G p.Q25Q AGCCCAAGGAGAC . 53 6 67 0 . 0 0 0 0 0 GPA33 10223 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 167042639 167042639 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . GPA33-90 NM_005814 exon2 c.C181A p.L61I GGAGGAGCTTATC . 130 29 145 0 . 0 0 0 0 0 TNN 63923 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 175046673 175046673 + Missense_Mutation SNP T T A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TNN-138 NM_022093 exon2 c.T119A p.V40D AACAGGTCACTGT . 144 57 145 0 . 0 0 0 0 0 PRG4 10216 bcgsc.ca 37 1 186276284 186276286 + In_Frame_Del DEL CTC CTC - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 CTC - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PRG4-91 NM_005807 exon7 c.1433_1435del p.478_479del CCACCACTCCCAA . 24 10 34 2 . 0 0 0 0 0 ZNF281 23528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 200378016 200378016 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ZNF281-154 NM_012482 exon2 c.C818T p.S273F TGATAGGAGCTTC . 179 35 159 0 . 0 0 0 0 0 FLVCR1 28982 broad.mit.edu 37 1 213037122 213037122 + Missense_Mutation SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FLVCR1-90 NM_014053 exon2 c.A794G p.N265S CACAGAATGACAC . 103 4 113 0 . 0 0 0 0 0 CENPF 1063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 214816433 214816433 + Silent SNP C C T rs200241672 alternate_allele TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CENPF-567 NM_016343 exon12 c.C4752T p.L1584L AGAGCTCGAGCAG . 102 47 102 0 C|0.999;G|0.001 0 0 0 0 0 USH2A 7399 broad.mit.edu 37 1 216363571 216363571 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . USH2A-115 NM_206933 exon20 c.G4390A p.A1464T CTGCTGCTAAAGT . 67 4 81 0 . 0 0 0 0 0 OBSCN 84033 hgsc.bcm.edu 37 1 228399799 228399799 + Silent SNP C C T rs11582369 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OBSCN-403 NM_001271223 exon2 c.C315T p.C105C CGCGTGCGCCGAG . 23 9 1 0 C|0.943;T|0.057 0 0 0 0 0 OBSCN 84033 hgsc.bcm.edu 37 1 228504670 228504670 + Missense_Mutation SNP C C T rs11810627 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OBSCN-403 NM_001271223 exon62 c.C16417T p.R5473W TCTGCGCGGCTCA . 64 53 4 0 C|0.643;T|0.357 0 0 0 0 0 OBSCN 84033 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 228563506 228563506 + Silent SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OBSCN-403 NM_001271223 exon109 c.T25638C p.I8546I CTACATTGTGCAG . 208 82 204 1 . 0 0 0 0 0 PCNXL2 80003 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 233388165 233388165 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PCNXL2-91 NM_014801 exon7 c.G2063C p.G688A TCAGGCCCACTGA . 237 15 229 0 . 0 0 0 0 0 HEATR1 55127 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 1 236722384 236722384 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HEATR1-93 NM_018072 exon35 c.G4822A p.V1608M TGCCCACCAGCCC . 59 23 27 0 . 0 0 0 0 0 LIPN 643418 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 10 90528645 90528645 + Missense_Mutation SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_001102469 exon5 c.T632C p.I211T CGGGCATTTTTAC . 68 33 68 0 . 0 0 0 0 0 IFIT1B 439996 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 91143636 91143636 + Missense_Mutation SNP A A T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . IFIT1B-90 NM_001010987 exon2 c.A566T p.D189V GCCTGGATAAATT . 79 12 80 0 . 0 0 0 0 0 PLCE1 51196 broad.mit.edu;bcgsc.ca 37 10 95931233 95931233 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PLCE1-229 NM_016341 exon4 c.C1789G p.L597V GAAGATCTGGTGA . 269 9 252 0 . 0 0 0 0 0 CCDC147 159686 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 106159171 106159171 + Missense_Mutation SNP A A T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CCDC147-71 NM_001008723 exon12 c.A1728T p.E576D TATTGAAAAGCAA . 89 15 101 0 . 0 0 0 0 0 TCF7L2 6934 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 10 114711350 114711350 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TCF7L2-586 NM_001198526 exon3 c.C365A p.S122X CGCTCTCGCCCAC . 114 26 114 0 . 0 0 0 0 0 MUC2 4583 bcgsc.ca 37 11 1092926 1092926 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MUC2-90 NM_002457 exon30 c.C4745G p.T1582R CCCCAACATCGAC . 168 10 151 2 . 0 0 0 0 0 MUC2 4583 broad.mit.edu 37 11 1093413 1093413 + Silent SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MUC2-90 NM_002457 exon30 c.G5232T p.T1744T AACCACGACACCC . 160 6 122 0 . 0 0 0 0 0 MUC5B 727897 bcgsc.ca 37 11 1268449 1268449 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_002458 exon31 c.G10339A p.V3447M CCCCCAGTGCCGA . 913 82 728 2 . 0 0 0 0 0 KRTAP5-1 387264 hgsc.bcm.edu 37 11 1606121 1606150 + In_Frame_Del DEL CCACAGCCACCCTTGGATCCCCCACAAGAG CCACAGCCACCCTTGGATCCCCCACAAGAG - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 CCACAGCCACCCTTGGATCCCCCACAAGAG CCACAGCCACCCTTGGATCCCCCACAAGAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KRTAP5-1-44 NM_001005922 exon1 c.330_359del p.110_120del CCGGAACCACAGC . 122 0 101 0 . 0 0 0 0 0 TH 7054 hgsc.bcm.edu;broad.mit.edu 37 11 2189798 2189798 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TH-90 NM_199292 exon4 c.G503A p.R168H CCTCGGCGCACCT . 95 12 22 0 . 0 0 0 0 0 OR51E2 81285 broad.mit.edu 37 11 4703475 4703475 + Frame_Shift_Del DEL A A - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OR51E2-502 NM_030774 exon2 c.467delT p.F156fs AGTGGGAAAAAAA . 105 9 106 0 . 0 0 0 0 0 OR56A3 390083 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 5969056 5969056 + Silent SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OR56A3-68 NM_001003443 exon1 c.T480C p.T160T TATGACTCTGCCC . 165 42 151 0 . 0 0 0 0 0 CTR9 9646 broad.mit.edu;bcgsc.ca;mdanderson.org 37 11 10796822 10796822 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CTR9-92 NM_014633 exon23 c.G2954A p.R985H AACGACGTCCACC . 80 15 77 2 . 0 0 0 0 0 OR4C16 219428 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 55339779 55339779 + Missense_Mutation SNP T T A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OR4C16-70 NM_001004701 exon1 c.T176A p.F59Y TGTTCTTCTTCCT . 217 12 159 0 . 0 0 0 0 0 OR4C6 219432 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 55432669 55432669 + Missense_Mutation SNP A A C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OR4C6-70 NM_001004704 exon1 c.A27C p.E9D GACTGAATTCATT . 33 7 28 0 . 0 0 0 0 0 OR5L2 26338 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 55595126 55595126 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OR5L2-69 NM_001004739 exon1 c.G432A p.L144L GGAGCTGACCTCT . 238 51 226 1 . 0 0 0 0 0 NRXN2 9379 hgsc.bcm.edu 37 11 64480641 64480641 + Silent SNP G G A rs2518907 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NRXN2-232 NM_138732 exon2 c.C531T p.G177G CAAGAGGCCGCGG . 4 4 0 0 G|0.449;A|0.551 0 0 0 0 0 TM7SF2 7108 hgsc.bcm.edu 37 11 64880090 64880090 + Silent SNP G G C rs4930284 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TM7SF2-91 NM_003273 exon2 c.G156C p.P52P CCTGCCGGGGCTG . 10 10 0 0 G|0.005;C|0.995 0 0 0 0 0 GAL3ST3 89792 hgsc.bcm.edu 37 11 65810209 65810209 + Silent SNP C C T rs61895584 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . GAL3ST3-91 NM_033036 exon3 c.G1065A p.P355P CTGCCACGGCTGC . 19 15 0 0 C|0.233;T|0.767 0 0 0 0 0 TMEM151A 256472 hgsc.bcm.edu 37 11 66062588 66062588 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TMEM151A-90 NM_153266 exon2 c.G871A p.V291M TGGCTCGTGTCGG . 65 32 7 0 . 0 0 0 0 0 UNC93B1 81622 broad.mit.edu 37 11 67763107 67763107 + Silent SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . . . . . CAGGGCACTGCCC . 216 4 74 1 . 0 0 0 0 0 PPFIA1 8500 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 70228237 70228237 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PPFIA1-228 NM_003626 exon27 c.G3594A p.R1198R AGTCAGGACTTAC . 215 19 76 0 . 0 0 0 0 0 SHANK2 22941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 11 70333395 70333395 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SHANK2-94 NM_133266 exon10 c.C1239T p.Y413Y GGGGACGTAGACG . 335 82 167 0 . 0 0 0 0 0 WNT11 7481 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 75898196 75898196 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . WNT11-562 NM_004626 exon5 c.C978T p.V326V CCGCTCGACCACG . 163 14 80 0 . 0 0 0 0 0 B3GNT6 192134 hgsc.bcm.edu 37 11 76751543 76751604 + In_Frame_Del DEL TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT TGGAGCGCGCCGGCCTGGCGCCCAGCGGCCACGAGGGCATCCTGGCCCTTCGGCGTGCAGCT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_138706 exon3 c.947_1006del p.316_336del GTGTCTTGGAGCG . 25 0 0 0 . 0 0 0 0 0 SIK2 23235 broad.mit.edu 37 11 111591721 111591721 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SIK2-783 NM_015191 exon12 c.G1879C p.E627Q GGACCGGAGGCAG . 85 4 78 0 . 0 0 0 0 0 USP28 57646 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 113679796 113679796 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . USP28-706 NM_020886 exon17 c.C2153G p.S718C GATGTAGAGTAGT . 250 61 283 2 . 0 0 0 0 0 VSIG2 23584 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 124618582 124618582 + Nonsense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . VSIG2-93 NM_014312 exon5 c.C664T p.Q222X CCATCTGGTTGGT . 149 45 158 1 . 0 0 0 0 0 FGF23 8074 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 4488634 4488634 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FGF23-660 NM_020638 exon1 c.C115G p.L39V GGATCAGGCCACC . 107 9 54 0 . 0 0 0 0 0 SCNN1A 6337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 6457898 6457898 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SCNN1A-90 NM_001159576 exon11 c.G1801A p.V601I CCGTGACAGAGGG . 175 24 178 0 . 0 0 0 0 0 PTPN6 5777 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 7060782 7060782 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PTPN6-703 NM_080548 exon2 c.C25T p.R9X TTTCACCGAGACC . 115 9 113 0 . 0 0 0 0 0 CD163L1 283316 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 7522051 7522051 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CD163L1-100 NM_174941 exon15 c.G3941A p.R1314Q TTGCACCGCATGT . 88 28 71 1 . 0 0 0 0 0 ARID2 196528 broad.mit.edu 37 12 46211485 46211485 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ARID2-100 NM_152641 exon5 c.G451T p.D151Y TCCATGGACTTTA . 33 4 36 0 . 0 0 0 0 0 HDAC7 51564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 48189737 48189737 + Silent SNP T T G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HDAC7-289 NM_015401 exon9 c.A858C p.T286T GGACACTGTCGGC . 122 20 80 0 . 0 0 0 0 0 TMBIM6 7009 broad.mit.edu;bcgsc.ca 37 12 50136045 50136045 + Silent SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TMBIM6-90 NM_001098576 exon1 c.A126G p.G42G TTTCGGATTGGTT . 81 10 56 1 . 0 0 0 0 0 KIF5A 3798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 57976934 57976934 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KIF5A-517 NM_004984 exon28 c.C3071G p.P1024R TTTTCCCTCTCCA . 130 31 90 0 . 0 0 0 0 0 SYCP3 50511 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 102122734 102122734 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SYCP3-90 NM_001177949 exon9 c.C682T p.R228W ACTTCCGAACACT . 90 20 71 0 . 0 0 0 0 0 MMAB 326625 broad.mit.edu 37 12 110011235 110011235 + Silent SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MMAB-90 NM_052845 exon1 c.C51A p.G17G GCGCAGGCCAAGA . 94 12 42 0 . 0 0 0 0 0 LHX5 64211 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 113906071 113906071 + Missense_Mutation SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . LHX5-90 NM_022363 exon3 c.A536G p.K179R CGCCGCTTGGTGC . 268 14 173 0 . 0 0 0 0 0 RNFT2 84900 hgsc.bcm.edu 37 12 117187907 117187907 + Silent SNP T T C rs111256849 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_001109903 exon4 c.T345C p.H115H CCACCATTTCCAC . 25 14 1 0 T|0.767;C|0.233 0 0 0 0 0 NOS1 4842 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 117725978 117725978 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NOS1-154 NM_000620 exon5 c.C1028T p.P343L TGAGAAGGATGCA . 130 61 104 1 . 0 0 0 0 0 SRRM4 84530 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 119583269 119583269 + Silent SNP C C T rs201517536 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SRRM4-2 NM_194286 exon9 c.C855T p.Y285Y GGAGTACGACTCA . 103 40 102 0 C|1.000;T|0.000 0 0 0 0 0 GCN1L1 10985 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 120589045 120589045 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . GCN1L1-94 NM_006836 exon34 c.G4213A p.V1405M CCTTCACCAGGCC . 101 15 105 0 . 0 0 0 0 0 CLIP1 6249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 12 122812908 122812908 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CLIP1-155 NM_001247997 exon16 c.G2933C p.S978T TCAATACTTTTTT . 71 14 50 0 . 0 0 0 0 0 RIMBP2 23504 hgsc.bcm.edu 37 12 130921471 130921471 + Silent SNP T T C rs2292663 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RIMBP2-142 NM_015347 exon10 c.A1971G p.P657P TGGCTGTGGCAGG . 86 49 2 0 T|0.868;C|0.132 0 0 0 0 0 GSX1 219409 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 13 28367932 28367932 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . GSX1-69 NM_145657 exon2 c.C642T p.G214G TGGCGGCGGCGGC . 180 80 98 1 . 0 0 0 0 0 TEP1 7011 hgsc.bcm.edu;broad.mit.edu 37 14 20869174 20869174 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TEP1-95 NM_007110 exon9 c.1518delG p.G506fs TTTGTTCCCCCGT . 221 13 144 0 . 0 0 0 0 0 CEBPE 1053 broad.mit.edu 37 14 23588089 23588089 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CEBPE-92 NM_001805 exon1 c.G212T p.G71V CCGGGGCCCTTGA . 90 9 63 0 . 0 0 0 0 0 SAMD4A 23034 hgsc.bcm.edu 37 14 55227103 55227103 + Silent SNP C C T rs12879706 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SAMD4A-90 NM_015589 exon6 c.C1401T p.A467A CGGGGCCAGCGGG . 5 5 0 0 C|0.973;T|0.027 0 0 0 0 0 ALKBH1 8846 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 78161095 78161095 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ALKBH1-228 NM_006020 exon3 c.C441A p.S147R CTCTTTGCTCTGT . 77 6 72 0 . 0 0 0 0 0 SNW1 22938 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 78205323 78205323 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SNW1-187 NM_012245 exon4 c.G412T p.E138X TAGCTTCTTCATC . 143 13 134 0 . 0 0 0 0 0 DYNC1H1 1778 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 102484794 102484794 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . DYNC1H1-98 NM_001376 exon41 c.G8184A p.L2728L GTTCCTGCGCCAC . 79 7 79 0 . 0 0 0 0 0 CDC42BPB 9578 bcgsc.ca 37 14 103447136 103447136 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CDC42BPB-581 NM_006035 exon8 c.G1114A p.V372M CATCCACGTCGAA . 166 8 149 0 . 0 0 0 0 0 EXOC3L4 91828 hgsc.bcm.edu 37 14 103568729 103568729 + Silent SNP A A G rs10142200 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . EXOC3L4-23 NM_001077594 exon2 c.A669G p.E223E GGAGGAAGCCCAC . 9 9 0 0 A|0.486;G|0.514 0 0 0 0 0 C14orf180 400258 hgsc.bcm.edu 37 14 105055119 105055127 + Frame_Shift_Del DEL GACGGGCAG GACGGGCAG - rs61397088 bycluster;alternate_allele TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 GACGGGCAG GACGGGCAG - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C14orf180-492 NM_001008404 exon5 c.482_784del p.161_161del GGCTCTGACGGGC . 18 4 2 0 -|1.000;|0.000 0 0 0 0 0 SKOR1 390598 hgsc.bcm.edu 37 15 68120014 68120014 + Silent SNP C C T rs62015251 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SKOR1-90 NM_001258024 exon7 c.C1668T p.Y556Y GGCGTACGGCGCG . 20 15 0 0 C|0.908;T|0.092 0 0 0 0 0 C15orf59 388135 broad.mit.edu 37 15 74032929 74032929 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C15orf59-91 NM_001039614 exon2 c.G211T p.D71Y AGTCGTCCGGCTC . 313 7 239 2 . 0 0 0 0 0 CSPG4 1464 broad.mit.edu 37 15 75981765 75981765 + Missense_Mutation SNP G G T rs149356457 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CSPG4-229 NM_001897 exon3 c.C1641A p.N547K GACAGGGTTGACC . 226 9 185 2 G|0.998;T|0.002 0 0 0 0 0 RASGRF1 5923 broad.mit.edu;bcgsc.ca 37 15 79290464 79290464 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RASGRF1-662 NM_002891 exon20 c.G2988C p.E996D CTTCCGCTCCTGG . 223 9 156 0 . 0 0 0 0 0 HOMER2 9455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 15 83527785 83527785 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HOMER2-67 NM_199330 exon5 c.C523G p.Q175E ACCTCTGCGTCAA . 123 42 107 0 . 0 0 0 0 0 SEC11A 23478 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 85230912 85230912 + Silent SNP A A G rs71395463 alternate_allele TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SEC11A-23 NM_014300 exon3 c.T255C p.F85F TATCCTAAAAACA . 113 7 92 0 A|0.500;T|0.500 0 0 0 0 0 RCCD1 91433 hgsc.bcm.edu 37 15 91500017 91500017 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RCCD1-90 NM_001017919 exon2 c.G53T p.G18V GCTTCGGGCAGGA . 37 13 4 0 . 0 0 0 0 0 C16orf89 146556 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 5097933 5097933 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C16orf89-92 NM_001098514 exon7 c.C901A p.Q301K GATATTGAATAGC . 39 18 29 0 . 0 0 0 0 0 ABCC6 368 broad.mit.edu 37 16 16302676 16302676 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ABCC6-93 NM_001171 exon7 c.G703T p.D235Y AGAGGTCTTTTGG . 310 87 303 2 . 0 0 0 0 0 CLN3 1201 bcgsc.ca 37 16 28502861 28502861 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CLN3-90 NM_001042432 exon3 c.C67A p.P23T GCCGGGGCTCCGG . 72 4 86 0 . 0 0 0 0 0 APOBR 55911 bcgsc.ca 37 16 28508069 28508069 + Silent SNP C C T rs151174 byfrequency;by1000genomes TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . APOBR-90 NM_018690 exon2 c.C1707T p.G569G GGGGGGCGCCCAG . 208 7 197 0 C|0.746;T|0.254 0 0 0 0 0 VPS35 55737 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 46705646 46705646 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . VPS35-90 NM_018206 exon12 c.C1495T p.R499C CAGAGCGCAGCAG . 154 29 147 0 . 0 0 0 0 0 DNAJA2 10294 broad.mit.edu;bcgsc.ca 37 16 47005448 47005448 + Missense_Mutation SNP T T A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . DNAJA2-226 NM_005880 exon3 c.A175T p.N59Y CAGGATTTGATAG . 52 17 68 1 . 0 0 0 0 0 ABCC11 85320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 16 48261750 48261750 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ABCC11-95 NM_033151 exon3 c.C362G p.S121X TGGACTGACAGTG . 111 20 151 0 . 0 0 0 0 0 CDH5 1003 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 66420935 66420935 + Missense_Mutation SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CDH5-525 NM_001795 exon3 c.A434G p.N145S ACGTGAACGACAA . 345 18 272 0 . 0 0 0 0 0 KLHDC4 54758 bcgsc.ca 37 16 87788864 87788864 + Missense_Mutation SNP G G A rs2303771 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KLHDC4-182 NM_001184856 exon4 c.C305T p.T102I TTTCTGGTATTGT . 145 8 188 0 G|0.634;A|0.366 0 0 0 0 0 RPL13 6137 hgsc.bcm.edu 37 16 89627671 89627671 + Silent SNP C C T rs174035 bycluster;byfrequency;by1000genomes TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RPL13-90 NM_001243131 exon3 c.C141T p.A47A CATCGCCCCGCGC . 20 12 0 0 C|0.846;T|0.154 0 0 0 0 0 NOS2 4843 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 26110037 26110037 + Missense_Mutation SNP A A T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NOS2-156 NM_000625 exon6 c.T563A p.F188Y GTGGCGAAGATGA . 228 45 147 1 . 0 0 0 0 0 ASIC2 40 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 31618452 31618452 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_183377 exon1 c.C682G p.L228V CGCAGAGCTCGCC . 116 17 85 0 . 0 0 0 0 0 RAD51D 5892 broad.mit.edu 37 17 33428353 33428353 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RAD51D-228 NM_001142571 exon9 c.G830A p.S277N CTCCCGCTGTCCC . 65 3 41 0 . 0 0 0 0 0 AATF 26574 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 35310421 35310421 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . AATF-90 NM_012138 exon3 c.G519C p.E173D GGAGGAGGAAGAC . 306 116 244 0 . 0 0 0 0 0 C17orf78 284099 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 35734873 35734873 + Missense_Mutation SNP G G A rs184660990 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_173625 exon2 c.G115A p.V39M AAAGACGTGAGAA . 323 49 262 0 G|0.999;A|0.001 0 0 0 0 0 KRTAP4-11 653240 broad.mit.edu 37 17 39274069 39274069 + Missense_Mutation SNP G G C rs75281517 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_033059 exon1 c.C499G p.R167G AGACTCGGCCACA . 206 6 140 0 G|0.750;C|0.250 0 0 0 0 0 KRT32 3882 broad.mit.edu 37 17 39619136 39619136 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KRT32-90 NM_002278 exon6 c.G1163A p.R388Q TCCAGCCGGGCCC . 156 20 100 2 . 0 0 0 0 0 KLHL10 317719 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 39998282 39998282 + Silent SNP A A T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KLHL10-227 NM_152467 exon2 c.A402T p.S134S CAAGTCAGAGCTG . 301 20 229 0 . 0 0 0 0 0 TBX21 30009 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 45821703 45821703 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TBX21-90 NM_013351 exon4 c.C911G p.A304G TGACTGCCTACCA . 211 26 177 0 . 0 0 0 0 0 WFIKKN2 124857 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 48916914 48916914 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . WFIKKN2-93 NM_175575 exon2 c.G265A p.V89M AGCTGCGTGGCGG . 270 98 186 1 . 0 0 0 0 0 TOM1L1 10040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 52993172 52993172 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TOM1L1-91 NM_005486 exon7 c.G669C p.L223F CATATTGATGGAG . 161 32 156 0 . 0 0 0 0 0 TBX4 9496 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 59560686 59560686 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TBX4-227 NM_018488 exon8 c.C1447T p.R483X CAGGTCCGAGAGC . 173 58 168 0 . 0 0 0 0 0 PITPNC1 26207 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 17 65683182 65683182 + Missense_Mutation SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PITPNC1-226 NM_181671 exon9 c.A683G p.D228G TTTCAGATATGAC . 138 27 96 0 . 0 0 0 0 0 RBFOX3 146713 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 17 77093792 77093792 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_001082575 exon10 c.G604A p.D202N CAGGCCCGTAGAC . 350 62 221 0 . 0 0 0 0 0 NPLOC4 55666 ucsc.edu;bcgsc.ca 37 17 79577266 79577266 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NPLOC4-24 NM_017921 exon5 c.G405A p.L135L TTTCCCCAAAGGG . 422 143 352 4 . 0 0 0 0 0 CCDC178 374864 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 30926226 30926226 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_001105528 exon8 c.G607C p.D203H AAGAGTCAATTTT . 96 9 95 0 . 0 0 0 0 0 LOXHD1 125336 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 18 44118286 44118286 + Missense_Mutation SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_144612 exon26 c.A3928G p.I1310V GGGTGATCTCGTA . 134 27 118 0 . 0 0 0 0 0 ARID3A 1820 hgsc.bcm.edu 37 19 929753 929753 + Silent SNP A A G rs1799595 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ARID3A-90 NM_005224 exon2 c.A225G p.P75P ACACCCAGCCAGC . 11 11 0 0 A|0.114;G|0.886 0 0 0 0 0 KLF16 83855 hgsc.bcm.edu 37 19 1854557 1854557 + Silent SNP A A G rs3746045 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KLF16-90 NM_031918 exon2 c.T660C p.P220P GGCACCAGGGCGC . 28 13 2 0 A|0.591;G|0.409 0 0 0 0 0 FAM108A1 81926 broad.mit.edu 37 19 1881527 1881527 + Frame_Shift_Del DEL G G - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM108A1-90 NM_031213 exon2 c.39delC p.F13fs GCAGCAGAAGAGG . 69 7 16 0 . 0 0 0 0 0 FAM108A1 81926 broad.mit.edu 37 19 1881529 1881530 + Frame_Shift_Del DEL AG AG - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM108A1-90 NM_031213 exon2 c.36_37del p.12_13del AGCAGAAGAGGCA . 68 7 16 0 . 0 0 0 0 0 ADAT3 113179 hgsc.bcm.edu 37 19 1912251 1912251 + Missense_Mutation SNP A A G rs150715312 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ADAT3-154 NM_138422 exon2 c.A205G p.K69E CTGGACAAGCGCC . 64 18 10 0 A|0.993;G|0.007 0 0 0 0 0 DOHH 83475 broad.mit.edu 37 19 3496745 3496745 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . DOHH-90 NM_001145165 exon2 c.C68A p.A23D AAGCGGGCCTGCA . 147 12 24 1 . 0 0 0 0 0 C19orf10 56005 hgsc.bcm.edu 37 19 4670313 4670313 + Missense_Mutation SNP C C G rs2270090 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C19orf10-90 NM_019107 exon1 c.G34C p.G12R TCGCGCCGACGCC . 9 7 1 0 C|0.752;G|0.248 0 0 0 0 0 TNFSF9 8744 broad.mit.edu 37 19 6534816 6534816 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TNFSF9-227 NM_003811 exon3 c.G504T p.Q168H CCTGCAGCCACTG . 82 8 23 1 . 0 0 0 0 0 CD209 30835 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 19 7808071 7808071 + Missense_Mutation SNP C C T rs200282091 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CD209-91 NM_021155 exon7 c.G1069A p.A357T ATTCCGCGCAGTC . 147 44 130 0 C|0.999;T|0.000 0 0 0 0 0 HNRNPM 4670 broad.mit.edu 37 19 8550869 8550869 + Frame_Shift_Del DEL C C - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HNRNPM-68 NM_005968 exon14 c.1557delC p.G519fs CATGGGCCCTGCC . 168 11 39 0 . 0 0 0 0 0 HNRNPM 4670 hgsc.bcm.edu 37 19 8550870 8550870 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HNRNPM-68 NM_005968 exon14 c.C1558T p.P520S ATGGGCCCTGCCA . 168 23 39 0 . 0 0 0 0 0 HNRNPM 4670 hgsc.bcm.edu 37 19 8550874 8550874 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HNRNPM-68 NM_005968 exon14 c.C1562G p.A521G GCCCTGCCATCGA . 167 38 39 0 . 0 0 0 0 0 HNRNPM 4670 hgsc.bcm.edu 37 19 8550876 8550876 + Missense_Mutation SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HNRNPM-68 NM_005968 exon14 c.A1564G p.I522V CCTGCCATCGAGC . 170 24 40 0 . 0 0 0 0 0 HNRNPM 4670 hgsc.bcm.edu 37 19 8550878 8550878 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HNRNPM-68 NM_005968 exon14 c.C1566G p.I522M TGCCATCGAGCGC . 169 40 40 0 . 0 0 0 0 0 LPAR2 9170 broad.mit.edu;bcgsc.ca 37 19 19737970 19737970 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . LPAR2-501 NM_004720 exon2 c.G124A p.V42I CGCTGACGGTCAG . 214 15 134 2 . 0 0 0 0 0 LSM14A 26065 broad.mit.edu 37 19 34710315 34710315 + Silent SNP T T G rs201741862 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . LSM14A-91 NM_001114093 exon7 c.T801G p.A267A TTCAGCTCCAAGG . 67 4 60 1 T|0.999;G|0.001 0 0 0 0 0 DMKN 93099 broad.mit.edu 37 19 36002403 36002404 + Frame_Shift_Del DEL GC GC - rs71940230 alternate_allele TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . DMKN-155 NM_001126058 exon5 c.827_828del p.276_276del ACTGCTGCTGCCA . 92 0 81 0 . 0 0 0 0 0 PRR19 284338 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 42814036 42814036 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PRR19-68 NM_199285 exon2 c.C300T p.P100P CAGCCCCACACTC . 38 5 52 0 . 0 0 0 0 0 ZNF285 26974 bcgsc.ca 37 19 44891003 44891003 + Silent SNP G G A rs201302972 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ZNF285-94 NM_152354 exon4 c.C1404T p.S468S AACAGAGCTATAC . 164 16 144 2 G|0.998;A|0.002 0 0 0 0 0 ZNF285 26974 bcgsc.ca 37 19 44891010 44891010 + Missense_Mutation SNP G G C rs150792548 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ZNF285-94 NM_152354 exon4 c.C1397G p.A466G CTATACGCAAAAT . 178 15 147 3 A|0.000;C|0.002;G|0.998 0 0 0 0 0 PTGIR 5739 hgsc.bcm.edu 37 19 47127324 47127324 + Silent SNP C C G rs2229128 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PTGIR-522 NM_000960 exon2 c.G159C p.V53V TCCGGTCACCAGC . 16 16 0 0 C|0.254;G|0.746 0 0 0 0 0 SLC8A2 6543 hgsc.bcm.edu 37 19 47951134 47951134 + Silent SNP C C T rs61748880 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SLC8A2-94 NM_015063 exon4 c.G1695A p.T565T GCGCGCCGTGCCG . 7 7 0 0 C|0.964;T|0.036 0 0 0 0 0 FAM83E 54854 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 49104471 49104471 + Silent SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM83E-91 NM_017708 exon5 c.A1332G p.P444P TCGGGCTGGGGAC . 71 6 54 0 . 0 0 0 0 0 KLK11 11012 broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 51527336 51527336 + Missense_Mutation SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KLK11-650 NM_144947 exon4 c.T524C p.L175P GAAATGAGGCAGC . 111 14 105 1 . 0 0 0 0 0 FPR1 2357 broad.mit.edu 37 19 52249450 52249450 + Silent SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FPR1-524 NM_001193306 exon3 c.C798G p.V266V GATTCTGACTGTG . 129 3 111 0 . 0 0 0 0 0 NLRP4 147945 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 56369429 56369429 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NLRP4-216 NM_134444 exon3 c.G670T p.E224X CAACCGGAGAGAC . 102 14 111 0 . 0 0 0 0 0 ZNF835 90485 broad.mit.edu 37 19 57176051 57176051 + Silent SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ZNF835-72 NM_001005850 exon2 c.C516A p.G172G GGCCTTGCCGCAC . 68 5 46 0 . 0 0 0 0 0 PEG3 5178 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 57327088 57327088 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PEG3-164 NM_001146184 exon9 c.G2722T p.V908F CAGGAACACTTTT . 69 5 48 0 . 0 0 0 0 0 CMPK2 129607 hgsc.bcm.edu 37 2 7005369 7005369 + Silent SNP A A G rs11678810 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CMPK2-68 NM_001256478 exon1 c.T459C p.C153C CTCCTGACAGGCG . 6 6 0 0 A|0.003;G|0.997 0 0 0 0 0 CPSF3 51692 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 9580674 9580674 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CPSF3-153 NM_016207 exon8 c.C815T p.S272L ATGCATCATCTTT . 142 45 145 0 . 0 0 0 0 0 CCDC121 79635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 27850291 27850291 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CCDC121-68 NM_001142683 exon2 c.G862A p.E288K TCTCCTCCTGTAA . 48 13 49 0 . 0 0 0 0 0 FAM179A 165186 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 29274646 29274646 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM179A-26 NM_199280 exon20 c.G2747A p.R916Q ACCCCCGGAAGCC . 170 16 157 0 . 0 0 0 0 0 C2orf71 388939 broad.mit.edu;bcgsc.ca 37 2 29296788 29296788 + Missense_Mutation SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C2orf71-91 NM_001029883 exon1 c.A340G p.I114V ACGGAATATCCTT . 233 10 263 1 . 0 0 0 0 0 PLEKHH2 130271 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 43984346 43984346 + Missense_Mutation SNP T T A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PLEKHH2-92 NM_172069 exon26 c.T3884A p.V1295D AGCAAGTCATAGA . 108 6 102 0 . 0 0 0 0 0 SRBD1 55133 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 45801796 45801796 + Missense_Mutation SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SRBD1-90 NM_018079 exon8 c.A1139G p.D380G TCTTTGTCTTTAG . 89 21 90 0 . 0 0 0 0 0 INO80B 83444 hgsc.bcm.edu 37 2 74684659 74684659 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . INO80B-226 NM_031288 exon5 c.G739A p.A247T ACTGCGGCGACCA . 18 6 5 0 . 0 0 0 0 0 KRCC1 51315 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 88327571 88327571 + Nonsense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KRCC1-69 NM_016618 exon4 c.C512G p.S171X TCCTCTGATTTTT . 52 20 71 0 . 0 0 0 0 0 CNNM4 26504 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 97475185 97475185 + Silent SNP C C T rs187426899 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CNNM4-154 NM_020184 exon7 c.C2259T p.D753D GGTGGACGAGACC . 203 86 178 0 C|0.999;T|0.000 0 0 0 0 0 PDCL3 79031 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 101192892 101192892 + Silent SNP C C T rs145184150 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PDCL3-90 NM_024065 exon6 c.C654T p.D218D TGAAGACGTGTTG . 84 14 92 0 C|0.999;T|0.001 0 0 0 0 0 POU3F3 5455 hgsc.bcm.edu 37 2 105472055 105472055 + Silent SNP T T C rs186512421 by1000genomes TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . POU3F3-45 NM_006236 exon1 c.T87C p.A29A AGGGGCTGGCGGC . 7 6 1 0 T|0.299;C|0.701 0 0 0 0 0 C2orf40 84417 hgsc.bcm.edu 37 2 106682226 106682226 + Silent SNP T T C rs4271786 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C2orf40-90 NM_032411 exon1 c.T6C p.A2A CATGGCTGCCTCC . 11 8 1 0 T|0.765;C|0.235 0 0 0 0 0 C2orf40 84417 hgsc.bcm.edu 37 2 106682235 106682235 + Silent SNP C C G rs4266035 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C2orf40-90 NM_032411 exon1 c.C15G p.P5P CTCCCCCGCGCGG . 15 10 1 0 C|0.795;G|0.205 0 0 0 0 0 MARCO 8685 broad.mit.edu 37 2 119739941 119739941 + Missense_Mutation SNP G G T rs202171758 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MARCO-95 NM_006770 exon12 c.G1018T p.G340W AGCCCCGGGAGTC . 128 4 114 2 . 0 0 0 0 0 NR4A2 4929 bcgsc.ca 37 2 157185931 157185931 + Silent SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NR4A2-189 NM_006186 exon3 c.C768A p.S256S GGAGGGGGAGCCC . 67 36 34 1 . 0 0 0 0 0 LY75 4065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 160676404 160676404 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . LY75-90 NM_002349 exon29 c.C3986A p.T1329N AGTGGGGTCTTAT . 54 19 58 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 179445121 179445121 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TTN-636 NM_001267550 exon317 c.G66985T p.A22329S TTCCTGCATCATA . 93 34 116 0 . 0 0 0 0 0 MYL1 4632 broad.mit.edu 37 2 211179635 211179635 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MYL1-91 NM_079420 exon1 c.G132C p.K44N AGTTACCTTAATG . 196 6 175 0 . 0 0 0 0 0 DNAJB2 3300 broad.mit.edu;bcgsc.ca 37 2 220149572 220149572 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . DNAJB2-226 NM_006736 exon9 c.C838G p.Q280E GAGGCACAGCACC . 166 12 161 1 . 0 0 0 0 0 SPEG 10290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 2 220354432 220354432 + Missense_Mutation SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SPEG-383 NM_005876 exon36 c.A8692G p.T2898A TCCTCTACTCCTG . 65 39 55 0 . 0 0 0 0 0 CDS2 8760 ucsc.edu;bcgsc.ca 37 20 5170814 5170814 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CDS2-226 NM_003818 exon13 c.C1272T p.I424I CCACATCTTCAAC . 331 57 304 3 . 0 0 0 0 0 INSM1 3642 hgsc.bcm.edu 37 20 20350152 20350152 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . INSM1-91 NM_002196 exon1 c.C1241T p.P414L CCGGGCCCGACGA . 6 4 0 0 . 0 0 0 0 0 FRG1B 284802 broad.mit.edu 37 20 29625956 29625956 + RNA SNP G G A rs147809085 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FRG1B-22 . . . . GACCAAGAGAACA . 169 5 153 0 . 0 0 0 0 0 FRG1B 284802 broad.mit.edu 37 20 29625971 29625971 + RNA SNP C C A rs145033899 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FRG1B-22 . . . . GGGAACCAGTCTT . 173 7 156 0 . 0 0 0 0 0 C20orf112 140688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 20 31115669 31115669 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C20orf112-514 NM_001256798 exon2 c.C369T p.V123V CACAGCGACCCGC . 104 27 83 0 . 0 0 0 0 0 WFDC8 90199 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 44184408 44184408 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . WFDC8-90 NM_181510 exon4 c.G377A p.R126K CAGCCCCTGTATT . 94 11 77 0 . 0 0 0 0 0 ARFRP1 10139 bcgsc.ca 37 20 62333492 62333492 + Silent SNP C C T rs112359854 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ARFRP1-291 NM_001134758 exon5 c.G342A p.A114A ACCAAACGCCTGC . 63 22 38 1 . 0 0 0 0 0 SON 6651 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 34924819 34924819 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SON-97 NM_032195 exon3 c.G3282A p.S1094S GATGTCGTCATAC . 324 72 263 1 . 0 0 0 0 0 KRTAP10-10 353333 ucsc.edu 37 21 46057625 46057625 + Silent SNP T T C rs55677560 bycluster TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KRTAP10-10-90 NM_181688 exon1 c.T291C p.P97P TGTGCCTGTCTGC . 141 13 120 0 C|1.000;|0.000 0 0 0 0 0 C21orf67 84536 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 46355733 46355733 + RNA SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . . . . . CCTGATGGGCAGG . 64 12 51 0 . 0 0 0 0 0 PRODH 5625 hgsc.bcm.edu 37 22 18923745 18923745 + Missense_Mutation SNP G G T rs2008720 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PRODH-289 NM_016335 exon2 c.C56A p.P19Q GACAGCGGGACGA . 5 5 0 0 G|0.457;T|0.543 0 0 0 0 0 SCARF2 91179 hgsc.bcm.edu 37 22 20780091 20780091 + Silent SNP C C G rs77189880 bycluster;byfrequency;by1000genomes TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SCARF2-341 NM_153334 exon11 c.G2187C p.P729P CAGCCCCGGGGGG . 6 6 0 0 C|0.138;G|0.862 0 0 0 0 0 CHEK2 11200 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 29121006 29121006 + Missense_Mutation SNP T T A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CHEK2-1515 NM_001005735 exon5 c.A680T p.N227I TTGTTATTCAAAG . 222 15 167 0 . 0 0 0 0 0 C22orf31 25770 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 29454817 29454817 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C22orf31-90 NM_015370 exon3 c.G786C p.Q262H GTCCCTCTGAGCA . 112 17 87 0 . 0 0 0 0 0 CSF2RB 1439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 37333549 37333549 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CSF2RB-93 NM_000395 exon14 c.C1699G p.P567A CAGCCCCCCAGCC . 65 7 47 0 . 0 0 0 0 0 CACNA1I 8911 broad.mit.edu 37 22 40066230 40066230 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CACNA1I-135 NM_021096 exon25 c.G4382A p.R1461H AGAAGCGCCGGAG . 66 15 49 1 . 0 0 0 0 0 ENTHD1 150350 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 22 40140106 40140106 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ENTHD1-93 NM_152512 exon7 c.C1402T p.L468L GATGCAGCTTGGC . 155 25 129 0 . 0 0 0 0 0 RRP7A 27341 bcgsc.ca 37 22 42912029 42912029 + Silent SNP G G T rs3201001 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RRP7A-91 NM_015703 exon3 c.C330A p.P110P TGGCTTGGGATGA . 172 8 122 1 G|0.748;T|0.252 0 0 0 0 0 ARPP21 10777 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 35730810 35730810 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ARPP21-93 NM_001267619 exon6 c.G418T p.E140X AGCCAAGAATACA . 276 83 236 2 . 0 0 0 0 0 MLH1 4292 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 37055929 37055929 + Silent SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MLH1-2559 NM_000249 exon9 c.G684C p.L228L AGAACTGATAGAA . 115 9 124 0 . 0 0 0 0 0 MAGI1 9223 broad.mit.edu 37 3 65372850 65372851 + Frame_Shift_Del DEL TC TC - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MAGI1-661 NM_015520 exon15 c.2467_2468del p.823_823del TTGATTTCTCTCT . 149 12 99 0 . 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550756 66550756 + Missense_Mutation SNP G G C rs1403625 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . LRIG1-230 NM_015541 exon1 c.C76G p.L26V GCCGAAGCAAAAG . 5 5 0 0 G|0.237;C|0.763 0 0 0 0 0 LRIG1 26018 hgsc.bcm.edu 37 3 66550762 66550762 + Missense_Mutation SNP G G C rs1403626 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . LRIG1-230 NM_015541 exon1 c.C70G p.L24V GCAAAAGCAGCCA . 5 5 0 0 G|0.252;C|0.748 0 0 0 0 0 CCDC14 64770 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 123650270 123650270 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CCDC14-68 NM_022757 exon10 c.G1551A p.V517V TTCAATCACTTTT . 22 4 31 0 . 0 0 0 0 0 CCDC39 339829 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 3 180372596 180372596 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CCDC39-72 NM_181426 exon7 c.C884T p.T295M TATGCCGTTCTAC . 95 20 74 0 . 0 0 0 0 0 MCF2L2 23101 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org 37 3 182941972 182941972 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MCF2L2-293 NM_015078 exon19 c.G2122C p.D708H GAAGATCTTCTTT . 17 8 16 0 . 0 0 0 0 0 ECE2 9718 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 183975278 183975278 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ECE2-94 NM_014693 exon2 c.C214G p.L72V AGTGCCCTGAGCT . 98 9 93 0 . 0 0 0 0 0 RTP1 132112 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 186917619 186917619 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RTP1-155 NM_153708 exon2 c.C553T p.R185W AACCGGCGGCACC . 215 26 54 0 . 0 0 0 0 0 TMEM44 93109 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 194336340 194336340 + Silent SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TMEM44-90 NM_001166305 exon8 c.A1011G p.Q337Q AAGGGCTTGGGTG . 129 10 108 0 . 0 0 0 0 0 GRK4 2868 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 2990469 2990469 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . GRK4-507 NM_182982 exon3 c.G164C p.S55T ATAGCAGTCTTTG . 113 9 80 0 . 0 0 0 0 0 BLOC1S4 55330 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 6718286 6718286 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_018366 exon1 c.G350A p.G117D GCGAGGGCGTGCC . 85 36 32 0 . 0 0 0 0 0 FAM184B 27146 hgsc.bcm.edu 37 4 17643848 17643848 + Missense_Mutation SNP G G A rs2286771 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM184B-23 NM_015688 exon13 c.C2350T p.R784W CGCCCCGCTCCTG . 18 12 0 0 G|0.440;A|0.560 0 0 0 0 0 LCORL 254251 hgsc.bcm.edu 37 4 18023336 18023336 + Silent SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . LCORL-90 NM_001166139 exon1 c.C39G p.A13A AGCAGCGGCGGCG . 12 5 2 0 . 0 0 0 0 0 RBM47 54502 hgsc.bcm.edu 37 4 40440854 40440854 + Silent SNP G G C rs1052153 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RBM47-25 NM_001098634 exon4 c.C57G p.S19S CTTGGCGGAGGAC . 7 7 0 0 G|0.794;C|0.206 0 0 0 0 0 ATP8A1 10396 broad.mit.edu 37 4 42580310 42580310 + Silent SNP A A C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ATP8A1-92 NM_001105529 exon12 c.T1095G p.V365V TTTCACAACTTCT . 167 4 102 0 . 0 0 0 0 0 CORIN 10699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 47788784 47788784 + Missense_Mutation SNP T T A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CORIN-91 NM_006587 exon3 c.A367T p.T123S CATCCGTAGTCCA . 215 32 147 0 . 0 0 0 0 0 TEC 7006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 48172291 48172291 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TEC-1004 NM_003215 exon5 c.G428T p.C143F TTTTCACATCCGG . 194 42 185 0 . 0 0 0 0 0 FRAS1 80144 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 79440544 79440544 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FRAS1-68 NM_025074 exon67 c.C10449G p.I3483M CTACATCTATGTG . 104 42 93 0 . 0 0 0 0 0 GK2 2712 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 80327936 80327936 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . GK2-94 NM_033214 exon1 c.C1419T p.S473S TTCAAGGCTCCAA . 262 27 170 0 . 0 0 0 0 0 COQ2 27235 hgsc.bcm.edu 37 4 84205872 84205872 + Missense_Mutation SNP C C A rs6818847 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . COQ2-92 NM_015697 exon1 c.G196T p.V66L GTGCCACAGCCCG . 7 7 0 0 C|0.324;A|0.676 0 0 0 0 0 MMRN1 22915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 90872784 90872784 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MMRN1-94 NM_007351 exon7 c.G3147A p.P1049P GCATCCGTGCCAA . 145 26 128 0 . 0 0 0 0 0 C4orf21 55345 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 113505163 113505163 + Silent SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C4orf21-90 NM_018392 exon15 c.A4269G p.P1423P ATAAAGTGGTATC . 66 18 56 0 . 0 0 0 0 0 QRFPR 84109 broad.mit.edu 37 4 122254171 122254171 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . QRFPR-90 NM_198179 exon4 c.G602A p.C201Y TCTAAGCAGCAGA . 212 8 189 0 . 0 0 0 0 0 GLRB 2743 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 158074152 158074152 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . GLRB-92 NM_000824 exon9 c.G1187T p.S396I ATATTAGCACTTT . 81 13 118 0 . 0 0 0 0 0 DDX60L 91351 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 169369890 169369890 + Missense_Mutation SNP A A C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . DDX60L-69 NM_001012967 exon9 c.T1037G p.V346G CCAAAAACGTTTA . 260 37 210 0 . 0 0 0 0 0 ACSL1 2180 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 4 185686036 185686036 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ACSL1-92 NM_001995 exon15 c.G1403A p.C468Y GTCAGGCAGCACC . 157 30 222 0 . 0 0 0 0 0 IRX4 50805 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 1879672 1879672 + Nonsense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . IRX4-226 NM_016358 exon4 c.G682T p.E228X CCCCCTCCTCCTC . 145 58 139 1 . 0 0 0 0 0 FAM173B 134145 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org 37 5 10239180 10239180 + Missense_Mutation SNP A A T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM173B-91 NM_199133 exon2 c.T305A p.I102N CTCACAATGCGTC . 38 17 46 0 . 0 0 0 0 0 MAP3K1 4214 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 56155597 56155597 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MAP3K1-956 NM_005921 exon3 c.C689T p.A230V TAGCAGCTGAGTC . 128 15 222 0 . 0 0 0 0 0 RASGRF2 5924 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 80409739 80409739 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RASGRF2-725 NM_006909 exon15 c.G2470T p.A824S CAAAAAGGTATTA . 42 14 55 0 . 0 0 0 0 0 RGMB 285704 hgsc.bcm.edu 37 5 98109838 98109838 + Missense_Mutation SNP A A C rs2662263 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_001012761 exon3 c.A187C p.S63R CGCCGCAGCCCCG . 4 4 0 0 T|0.046;G|0.950 0 0 0 0 0 SOWAHA 134548 hgsc.bcm.edu 37 5 132149684 132149684 + Missense_Mutation SNP G G C rs40274 bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_175873 exon1 c.G371C p.R124P TGGTCCGGGTGCC . 10 10 0 0 G|0.980;C|0.020 0 0 0 0 0 AFF4 27125 hgsc.bcm.edu 37 5 132232343 132232343 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . AFF4-229 NM_014423 exon11 c.C1979A p.P660H GAAGGAGGAAGGC . 80 4 120 0 . 0 0 0 0 0 HARS2 23438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 5 140075331 140075331 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HARS2-90 NM_012208 exon6 c.C534T p.D178D TTTTGACATTGCT . 148 22 190 0 . 0 0 0 0 0 PCDHB10 56126 hgsc.bcm.edu 37 5 140573844 140573844 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PCDHB10-92 NM_018930 exon1 c.C1719T p.T573T CTGCACCGAGCTG . 92 27 3 0 . 0 0 0 0 0 PCDHGB7 56099 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 140797965 140797965 + Missense_Mutation SNP T T C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PCDHGB7-29 NM_018927 exon1 c.T539C p.L180S TCTCATTGGTGGA . 122 12 122 0 . 0 0 0 0 0 FLT4 2324 broad.mit.edu;bcgsc.ca 37 5 180046752 180046752 + Missense_Mutation SNP C C T rs144045237 alternate_allele TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FLT4-1490 NM_182925 exon18 c.G2560A p.G854S AGGCGCCGTAGCC . 242 15 187 1 . 0 0 0 0 0 OR2Y1 134083 bcgsc.ca 37 5 180166250 180166250 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OR2Y1-68 NM_001001657 exon1 c.G809T p.G270V AATTTTCCCTCAC . 33 9 44 1 . 0 0 0 0 0 TXNDC5 81567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 7904880 7904880 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TXNDC5-90 NM_030810 exon2 c.G340A p.V114I CATAGACTTTGGC . 76 13 86 0 . 0 0 0 0 0 TRIM39 56658 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 30297383 30297383 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TRIM39-161 NM_021253 exon3 c.G289A p.V97I CAGGCCGTCAAGC . 155 13 139 0 . 0 0 0 0 0 SKIV2L 6499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31927812 31927812 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SKIV2L-290 NM_006929 exon3 c.C152T p.A51V CTTGTGCCCCAGA . 75 11 81 0 . 0 0 0 0 0 SKIV2L 6499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31927815 31927815 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SKIV2L-290 NM_006929 exon3 c.C155A p.P52Q GTGCCCCAGATCT . 73 10 81 0 . 0 0 0 0 0 SKIV2L 6499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31928995 31928995 + Silent SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SKIV2L-290 NM_006929 exon8 c.A621G p.G207G TCCTGGACTACTA . 147 15 133 0 . 0 0 0 0 0 HLA-DOB 3112 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 32782314 32782314 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HLA-DOB-91 NM_002120 exon3 c.C426T p.H142H AGAGCAGTGCAGC . 137 18 134 0 . 0 0 0 0 0 NFYA 4800 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 41057410 41057410 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NFYA-226 NM_002505 exon5 c.C402G p.I134M CATCATCCAGCAG . 233 33 178 0 . 0 0 0 0 0 CNPY3 10695 broad.mit.edu 37 6 42897358 42897360 + In_Frame_Del DEL TGC TGC - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CNPY3-69 NM_006586 exon1 c.50_52del p.17_18del TTCCCTTGCTGCT . 85 9 34 0 . 0 0 0 0 0 CUL9 23113 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 43181477 43181477 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CUL9-529 NM_015089 exon29 c.C5515G p.P1839A CCTGGGCCCCAGC . 69 37 52 1 . 0 0 0 0 0 PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 51890570 51890570 + Silent SNP G G A rs147584295 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PKHD1-603 NM_170724 exon32 c.C4038T p.N1346N GCTCACGTTGCCC . 134 61 148 0 G|0.999;A|0.001 0 0 0 0 0 SERINC1 57515 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 122772896 122772925 + Frame_Shift_Del DEL ATTCCTACAAAAAAAAAAAAAAAAAAATAT ATTCCTACAAAAAAAAAAAAAAAAAAATAT - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 ATTCCTACAAAAAAAAAAAAAAAAAAATAT ATTCCTACAAAAAAAAAAAAAAAAAAATAT - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SERINC1-91 NM_020755 exon7 c.760_763del p.254_255del GTTGTGATTCCTA . 82 12 81 0 . 0 0 0 0 0 LAMA2 3908 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 129465098 129465098 + Missense_Mutation SNP A A C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . LAMA2-162 NM_000426 exon5 c.A692C p.E231A CTCCAGAACTGCT . 71 11 59 0 . 0 0 0 0 0 MED23 9439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 6 131914268 131914268 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MED23-24 NM_015979 exon25 c.G3294A p.W1098X GAATCTCCAGTCA . 188 86 209 0 . 0 0 0 0 0 RADIL 55698 hgsc.bcm.edu 37 7 4876135 4876135 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RADIL-994 NM_018059 exon3 c.C637T p.R213C CTGTGCGGCGCAA . 49 7 8 0 . 0 0 0 0 0 TNRC18 84629 hgsc.bcm.edu 37 7 5372406 5372406 + Silent SNP G G T rs13238738 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TNRC18-46 NM_001080495 exon19 c.C5994A p.R1998R CTCGCTGCGGCGC . 15 10 0 0 G|0.411;T|0.589 0 0 0 0 0 USP42 84132 hgsc.bcm.edu 37 7 6193521 6193521 + Missense_Mutation SNP G G C rs61729726 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . USP42-659 NM_032172 exon15 c.G2336C p.R779P CGCCCCGCGATCC . 27 12 3 0 G|0.456;C|0.544 0 0 0 0 0 C7orf31 136895 broad.mit.edu;bcgsc.ca 37 7 25208036 25208036 + Silent SNP G G A rs148188847 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C7orf31-90 NM_138811 exon3 c.C183T p.G61G TTCAGCGCCCCAA . 221 12 167 1 G|1.000;A|0.000 0 0 0 0 0 HOXA4 3201 hgsc.bcm.edu 37 7 27170145 27170145 + Missense_Mutation SNP T T G rs6944345 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HOXA4-153 NM_002141 exon1 c.A208C p.T70P AGGCAGTGGGCTC . 5 5 0 0 T|0.037;G|0.963 0 0 0 0 0 ADCYAP1R1 117 broad.mit.edu;bcgsc.ca 37 7 31123819 31123819 + Missense_Mutation SNP T T A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ADCYAP1R1-91 NM_001118 exon7 c.T392A p.F131Y ATTACTTTGATGC . 219 7 152 0 . 0 0 0 0 0 RFC2 5982 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 73649931 73649931 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RFC2-229 NM_181471 exon10 c.C885T p.I295I GCCAATGATATCT . 168 55 114 0 . 0 0 0 0 0 TRRAP 8295 broad.mit.edu 37 7 98529263 98529263 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TRRAP-923 NM_001244580 exon26 c.C3827T p.T1276M GTGTCACGGTGAT . 119 7 121 2 . 0 0 0 0 0 MOSPD3 64598 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 7 100212602 100212602 + Silent SNP T T A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MOSPD3-92 NM_001040098 exon5 c.T624A p.P208P GCTGCCTCAAGTC . 100 20 75 0 . 0 0 0 0 0 CPED1 79974 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 120768496 120768496 + Missense_Mutation SNP A A T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_001105533 exon10 c.A1363T p.M455L TCAATTATGACTT . 306 21 270 0 . 0 0 0 0 0 PODXL 5420 hgsc.bcm.edu 37 7 131241030 131241035 + In_Frame_Del DEL GGCGAC GGCGAC - rs11277659 alternate_allele TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 GGCGAC GGCGAC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PODXL-136 NM_001018111 exon1 c.84_89del p.28_30del TGGGAGGGCGACG . 18 8 0 0 . 0 0 0 0 0 FAM115A 9747 broad.mit.edu 37 7 143556212 143556212 + Nonsense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM115A-68 NM_001206938 exon7 c.C2210A p.S737X TGCACTGACTCCA . 410 19 238 1 . 0 0 0 0 0 MYOM2 9172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 2040266 2040266 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MYOM2-95 NM_003970 exon16 c.C1921A p.L641M GAGGACCTGCTGG . 265 126 218 1 . 0 0 0 0 0 SGK223 0 broad.mit.edu 37 8 8239069 8239069 + Missense_Mutation SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_001080826 exon1 c.G189T p.R63S CTCAGGCCTGGGA . 92 9 44 1 . 0 0 0 0 0 COL22A1 169044 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 8 139793209 139793209 + Silent SNP C C A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . COL22A1-103 NM_152888 exon13 c.G1611T p.L537L GCCGGGCAGGCCC . 76 39 33 0 . 0 0 0 0 0 FAM83H 286077 hgsc.bcm.edu 37 8 144808866 144808866 + Missense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM83H-92 NM_198488 exon5 c.G2765A p.R922H CTCCTGCGCTCCG . 34 12 6 0 . 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144998169 144998169 + Silent SNP C C T rs1140522 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PLEC-141 NM_201380 exon31 c.G6339A p.A2113A CTCCGCCGCCAGC . 12 8 0 0 C|0.740;T|0.260 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 144998190 144998190 + Silent SNP A A G rs2857829 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PLEC-141 NM_201380 exon31 c.T6318C p.A2106A CCTCGCAGCCTCC . 22 15 5 0 A|0.738;G|0.262 0 0 0 0 0 PLEC 5339 hgsc.bcm.edu 37 8 145001784 145001784 + Silent SNP A A G rs3135109 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PLEC-141 NM_201380 exon27 c.T3961C p.L1321L CAAGCAACTGGGC . 56 40 0 0 G|0.246;A|0.754 0 0 0 0 0 ERMP1 79956 broad.mit.edu 37 9 5801292 5801292 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ERMP1-69 NM_024896 exon11 c.1951delA p.T651fs GCATGGTTTTTTT . 675 8 142 0 . 0 0 0 0 0 ERMP1 79956 hgsc.bcm.edu 37 9 5832728 5832728 + Silent SNP G G C rs1131727 byfrequency TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ERMP1-69 NM_024896 exon1 c.C300G p.A100A TCCAGCGGCCCCG . 91 86 2 0 G|0.572;C|0.428 0 0 0 0 0 UHRF2 115426 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 6460639 6460639 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . UHRF2-721 NM_152896 exon4 c.G711C p.L237F CATTTTGAAATGG . 85 11 67 0 . 0 0 0 0 0 UHRF2 115426 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 6460721 6460721 + Missense_Mutation SNP G G C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . UHRF2-721 NM_152896 exon4 c.G793C p.D265H TGGTTTGATGCAG . 110 12 87 0 . 0 0 0 0 0 TAF1L 138474 hgsc.bcm.edu 37 9 32633584 32633584 + Frame_Shift_Del DEL T T - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TAF1L-870 NM_153809 exon1 c.1994delA p.K665fs TTGGCCTTTTTTT . 1628 13 263 1 . 0 0 0 0 0 AQP7 364 ucsc.edu 37 9 33385287 33385287 + Missense_Mutation SNP T T C rs74557595 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 T T - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . AQP7-90 NM_001170 exon8 c.A745G p.N249D CCCCATTGCTGCA . 34 10 36 3 . 0 0 0 0 0 HRCT1 646962 broad.mit.edu 37 9 35906348 35906350 + In_Frame_Del DEL CTG CTG - novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HRCT1-22 NM_001039792 exon1 c.64_66del p.22_22del GCGGTCCTGCTGC . 431 10 89 0 . 0 0 0 0 0 SPATA31A6 389730 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 43627272 43627272 + Missense_Mutation SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 A A - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . . NM_001145196 exon4 c.T1415C p.L472P TGGGACAGGGGCT . 95 20 106 0 . 0 0 0 0 0 TRPM3 80036 broad.mit.edu;bcgsc.ca 37 9 73457979 73457979 + Missense_Mutation SNP G G C rs146744968 alternate_allele TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TRPM3-521 NM_001007471 exon5 c.C741G p.C247W TATGGTGCATATC . 123 6 83 0 G|1.000;A|0.000 0 0 0 0 0 GADD45G 10912 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 92220393 92220393 + Nonsense_Mutation SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . GADD45G-514 NM_006705 exon2 c.C100T p.Q34X TCGGCGCAGCGTC . 83 37 54 0 . 0 0 0 0 0 BAAT 570 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 104124861 104124861 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . BAAT-228 NM_001127610 exon4 c.C1106A p.S369Y AGAGGAGAATAGG . 194 79 173 1 . 0 0 0 0 0 OR13C3 138803 broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 107298937 107298937 + Missense_Mutation SNP A A G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . OR13C3-69 NM_001001961 exon1 c.T158C p.I53T ATCTCAATCTTTG . 183 32 168 1 . 0 0 0 0 0 DFNB31 25861 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 117185706 117185706 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . DFNB31-95 NM_001173425 exon7 c.C1514T p.A505V TGCCGCGCCTTCA . 187 47 166 0 . 0 0 0 0 0 TRIM32 22954 ucsc.edu 37 9 119460913 119460913 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . TRIM32-650 NM_012210 exon2 c.C892G p.P298A AAGAAGCCCCGGA . 85 9 73 2 . 0 0 0 0 0 CRB2 286204 hgsc.bcm.edu 37 9 126136139 126136139 + Missense_Mutation SNP C C T rs73571431 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . CRB2-91 NM_173689 exon10 c.C3329T p.T1110M GTCACACGCACCC . 12 4 0 0 C|0.875;T|0.125 0 0 0 0 0 USP20 10868 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 132637739 132637739 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . USP20-658 NM_001008563 exon20 c.C2199T p.T733T CCAGACCTTCCTC . 122 16 99 1 . 0 0 0 0 0 ABL1 25 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 9 133760173 133760173 + Silent SNP C C T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . ABL1-3810 NM_007313 exon11 c.C2553T p.H851H CCCCCACAAGGAA . 171 51 168 0 . 0 0 0 0 0 SARDH 1757 broad.mit.edu 37 9 136577795 136577795 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SARDH-90 NM_007101 exon10 c.C1274A p.A425D CAGTGGGCCAGCT . 53 8 36 2 . 0 0 0 0 0 MAGEB4 4115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 30261199 30261199 + Missense_Mutation SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G G - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MAGEB4-131 NM_002367 exon1 c.G947A p.G316E GAGCTGGAGCCCG . 60 19 63 0 . 0 0 0 0 0 FAM47A 158724 bcgsc.ca 37 X 34148842 34148842 + Silent SNP G G A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM47A-134 NM_203408 exon1 c.C1554T p.R518R CTCCGAGCGGAGA . 103 10 101 1 . 0 0 0 0 0 FAM47A 158724 bcgsc.ca 37 X 34148844 34148844 + Missense_Mutation SNP G G C rs17855514 TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 G - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . FAM47A-134 NM_203408 exon1 c.C1552G p.R518G CCGAGCGGAGACT . 107 13 101 3 . 0 0 0 0 0 PIN4 5303 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org 37 X 71417263 71417263 + Missense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . PIN4-130 NM_006223 exon4 c.C358G p.Q120E CCATTTCAAGAAG . 442 86 350 0 . 0 0 0 0 0 MAGEE1 57692 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 75648451 75648451 + Nonsense_Mutation SNP C C G novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 C C - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . MAGEE1-262 NM_020932 exon1 c.C128G p.S43X CAGGCTCAGACGT . 336 19 247 0 . 0 0 0 0 0 SPANXN3 139067 broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 142605206 142605206 + Missense_Mutation SNP G G T novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . SPANXN3-132 NM_001009609 exon1 c.C14A p.T5N CTGGAAGTTGGCT . 95 23 111 2 . 0 0 0 0 0 HNRNPM 4670 broad.mit.edu 37 19 8550873 8550874 + Frame_Shift_Ins INS - - A novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . HNRNPM-68 NM_005968 exon14 c.1561_1562insA p.A521fs GGCCCTGCCATCG . 167 10 39 0 . 0 0 0 0 0 KRTAP10-6 386674 broad.mit.edu 37 21 46012219 46012220 + In_Frame_Ins INS - - GGGGCGCAGCAGCTG novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . KRTAP10-6-90 NM_198688 exon1 c.147_148insCAGCTGCTGCGCCCC p.P49delinsPSCCAP GGGGGCCGGGGCG . 99 9 34 0 . 0 0 0 0 0 RHBDD3 25807 broad.mit.edu 37 22 29661518 29661519 + Frame_Shift_Ins INS - - C rs150836859 by1000genomes TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . RHBDD3-91 NM_012265 exon3 c.98_99insG p.A33fs GGGCCGGCCCCCA . 290 11 177 0 . 0 0 0 0 0 NUP214 8021 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 134073007 134073008 + Frame_Shift_Ins INS - - C novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 - - - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . NUP214-1131 NM_005085 exon29 c.4126_4127insC p.A1376fs TTTACTGCCCCCC . 130 14 147 0 . 0 0 0 0 0 C11orf96 387763 broad.mit.edu 37 11 43965005 43965006 + Missense_Mutation DNP CC CC AA novel TCGA-OR-A5L2-01A-11D-A30A-10 TCGA-OR-A5L2-10A-01D-A30A-10 CC CC - - - - Unknown Untested Somatic Phase_I WXS none . . Illumina GAIIx b99bd79e-aa33-4896-8d10-2517c793f439 48e26b1d-b84d-432b-940b-9907c81ddf5b . C11orf96-46 . . . p.L301M CTCGCCCTGGCCC . 15 1 8 0 . 0 0 0 0 0