Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBR4	23352	bcgsc.ca	37	1	19447843	19447843	+	Silent	SNP	C	C	G	rs1044010	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	UBR4-612	NM_020765	exon68	c.G9981C	p.L3327L	GCCGCACAGAGCA	.	348	11	437	4	C|0.488;G|0.512	0	0	0	0	0
RSPO1	284654	bcgsc.ca	37	1	38079517	38079517	+	Missense_Mutation	SNP	T	T	G	rs36043533	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	RSPO1-22	NM_001242908	exon6	c.A484C	p.K162Q	GCTGCTTCTTGGA	.	219	14	320	2	T|0.954;G|0.046	0	0	0	0	0
ZFYVE9	9372	bcgsc.ca	37	1	52761610	52761610	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ZFYVE9-230	NM_004799	exon12	c.G3294T	p.L1098F	GCCATTGTTTGGA	.	50	4	71	0	.	0	0	0	0	0
DHCR24	1718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	55337052	55337052	+	Missense_Mutation	SNP	C	C	G	rs181555625	alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DHCR24-91	NM_014762	exon5	c.G847C	p.V283L	TCATGACCCCTGT	.	60	6	80	0	C|0.999;A|0.000	8	8	0	0	0
SPRR3	6707	ucsc.edu	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SPRR3-45	NM_001097589	exon2	c.C219T	p.G73G	GCCAGGCTGTACC	.	117	30	87	0	A|0.000;C|0.697;T|0.303	1	1	0	0	0
SPRR3	6707	ucsc.edu	37	1	152975739	152975739	+	Silent	SNP	T	T	A	rs17851565	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SPRR3-45	NM_001097589	exon2	c.T243A	p.G81G	GCCAGGTTGTACC	.	115	14	93	1	A|0.010;C|0.001;T|0.988	0	0	0	0	0
FCRL2	79368	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	157740445	157740445	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	FCRL2-92	NM_030764	exon3	c.64delC	p.L22fs	CCACAAGGGTCAG	.	56	16	36	0	.	0	0	0	0	0
GJC2	57165	hgsc.bcm.edu	37	1	228346053	228346053	+	Silent	SNP	C	C	T	rs116557768		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GJC2-68	NM_020435	exon2	c.C594T	p.H198H	GCAACACGATGGG	.	21	14	0	0	C|0.986;T|0.014	0	0	0	0	0
ECHDC3	79746	hgsc.bcm.edu	37	10	11784633	11784633	+	Missense_Mutation	SNP	C	C	T	rs11558855		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ECHDC3-90	NM_024693	exon1	c.C58T	p.R20C	CTCCGGCGCGGCC	.	6	6	0	0	C|0.878;T|0.122	0	0	0	0	0
PTPLA	9200	hgsc.bcm.edu	37	10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	rs7895850	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PTPLA-226	NM_014241	exon1	c.G190C	p.E64Q	TCCGCTCGCCGGG	.	11	7	0	0	C|0.007;G|0.002;T|0.991	0	0	0	0	0
SLC25A16	8034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70243288	70243288	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SLC25A16-90	NM_152707	exon9	c.C900G	p.L300L	ACGATAGAGTCCT	.	51	12	38	0	.	1	0	1	0	0
ACADSB	36	bcgsc.ca	37	10	124800853	124800853	+	Silent	SNP	C	C	T	rs1140591	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ACADSB-92	NM_001609	exon5	c.C639T	p.H213H	TGAGCACGCAGGG	.	83	4	75	0	A|0.000;C|0.783;G|0.000;T|0.217	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219036	134219036	+	Silent	SNP	G	G	A	rs11817589	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PWWP2B-90	NM_001098637	exon2	c.G1032A	p.E344E	CAGCGAGCACGAG	.	14	7	0	0	G|0.909;A|0.091	2	2	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	16	8	0	0	C|0.860;T|0.140	2	2	0	0	0
PHLDA2	7262	broad.mit.edu	37	11	2950513	2950513	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PHLDA2-514	NM_003311	exon1	c.C82A	p.R28S	CCCCGCGCTTCTT	.	83	7	19	1	.	0	0	0	0	0
NTF3	4908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5604093	5604093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NTF3-205	NM_001102654	exon2	c.G752A	p.R251Q	GCTGGCGGTGGAT	.	79	24	59	0	.	0	0	0	0	0
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6174404	6174404	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	VWF-163	NM_000552	exon11	c.A1192T	p.S398C	CAAAGCTCTTGAA	.	170	57	111	0	.	3	3	0	0	0
KRT72	140807	hgsc.bcm.edu	37	12	52995020	52995020	+	Missense_Mutation	SNP	C	C	T	rs57242225	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	KRT72-96	NM_001146225	exon1	c.G217A	p.G73S	CGAAGCCGCCCAG	.	13	8	1	0	C|0.921;T|0.079	0	0	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	105	4	46	1	.	0	0	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187919	117187919	+	Silent	SNP	C	C	T	rs116754010	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	NM_001109903	exon4	c.C357T	p.G119G	CCATGGCGGCCAC	.	7	4	0	0	C|0.954;T|0.046	0	0	0	0	0
OR4K5	79317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20389141	20389141	+	Missense_Mutation	SNP	A	A	C	rs200386813	alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	OR4K5-70	NM_001005483	exon1	c.A376C	p.I126L	GTAGCCATATGCA	.	259	42	163	0	A|0.999;G|0.001	0	0	0	0	0
HECTD1	25831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31647449	31647449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	HECTD1-570	NM_015382	exon3	c.G152A	p.R51H	AAAGTGCGAGGAG	.	40	13	33	0	.	0	0	0	0	0
TTLL5	23093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	76219245	76219245	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	TTLL5-92	NM_015072	exon18	c.C1497T	p.L499L	CTACCTCGAGCAT	.	35	12	32	0	.	0	0	0	0	0
KIF26A	26153	hgsc.bcm.edu	37	14	104644099	104644099	+	Silent	SNP	T	T	C	rs2497297	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	KIF26A-24	NM_015656	exon12	c.T4974C	p.S1658S	CAGCAGTGGCTAT	.	10	6	0	0	T|0.603;C|0.397	0	0	0	0	0
OR4N4	283694	bcgsc.ca	37	15	22382897	22382897	+	Missense_Mutation	SNP	A	A	G	rs62006710	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	OR4N4-73	NM_001005241	exon1	c.A425G	p.Y142C	CCTGCTATGCAAT	.	184	7	131	1	A|0.815;G|0.185	0	0	0	0	0
DISP2	85455	hgsc.bcm.edu	37	15	40660192	40660192	+	Silent	SNP	C	C	T	rs8040755	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DISP2-92	NM_033510	exon8	c.C1879T	p.L627L	GCTGTGCTGGTGC	.	9	4	2	0	C|0.941;T|0.059	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	5	5	0	0	A|0.226;C|0.774	0	0	0	0	0
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93521561	93521561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CHD2-229	NM_001271	exon21	c.A2675G	p.Q892R	ACCCCCAGAATGA	.	45	11	37	0	.	0	0	0	0	0
CLEC16A	23274	bcgsc.ca	37	16	11114170	11114170	+	Missense_Mutation	SNP	C	C	T	rs74163614		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CLEC16A-92	NM_015226	exon11	c.C1424T	p.T475M	AGAGCACGCAATG	.	121	5	101	0	C|0.999;T|0.001	0	0	0	0	0
NOMO1	23420	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	14988885	14988885	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NOMO1-45	NM_014287	exon30	c.G3475T	p.G1159X	GCACAAGGATCCT	.	2445	348	2184	4	.	182	181	1	0	0
MYH11	4629	hgsc.bcm.edu;ucsc.edu	37	16	15809040	15809040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	MYH11-666	NM_001040114	exon40	c.C5615A	p.A1872D	TGCTCGGCCATCT	.	40	4	39	0	.	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	4	4	0	0	T|0.035;G|0.004	0	0	0	0	0
CDT1	81620	bcgsc.ca	37	16	88872511	88872511	+	Silent	SNP	T	T	C	rs510862	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CDT1-227	NM_030928	exon6	c.T915C	p.H305H	GGAGCATGTCAAG	.	88	6	76	0	T|0.145;C|0.855	0	0	0	0	0
FLCN	201163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	17131266	17131266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	FLCN-1292	NM_144997	exon4	c.C186A	p.S62R	TGCGGGGCTGTGC	.	196	69	123	0	.	0	0	0	0	0
EIF1	10209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39847059	39847059	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	EIF1-90	NM_005801	exon4	c.T323C	p.L108P	ATCAGCTGAAGGT	.	126	48	120	0	.	1395	734	661	0	0
SERPINB12	89777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61223496	61223496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SERPINB12-227	NM_080474	exon1	c.T104C	p.L35P	TGAGCCTCTCAGC	.	136	51	112	0	.	0	0	0	0	0
CELF5	60680	bcgsc.ca	37	19	3224896	3224896	+	Silent	SNP	G	G	C	rs17852497	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CELF5-92	NM_021938	exon1	c.G159C	p.P53P	GATCCCGCGGCAC	.	306	11	159	2	G|0.815;C|0.185	0	0	0	0	0
C3	718	bcgsc.ca	37	19	6677989	6677989	+	Silent	SNP	G	G	A	rs17030	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C3-95	NM_000064	exon41	c.C4896T	p.P1632P	CTCCTCGGGCCAG	.	117	5	104	1	G|0.494;A|0.506	504	504	0	0	0
UNC13A	23025	bcgsc.ca	37	19	17741047	17741047	+	Silent	SNP	A	A	G	rs10413821	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	UNC13A-25	NM_001080421	exon29	c.T3576C	p.V1192V	GGAGAAAACATCC	.	105	5	135	0	A|0.571;G|0.429	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002386	36002386	+	Missense_Mutation	SNP	C	C	T	rs117522133	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DMKN-155	NM_001126058	exon5	c.G845A	p.S282N	CCGCCACTGCTGC	.	66	21	72	0	C|0.945;T|0.055	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002389	36002389	+	Missense_Mutation	SNP	C	C	T	rs142519211	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DMKN-155	NM_001126058	exon5	c.G842A	p.S281N	CCACTGCTGCCGC	.	63	18	72	0	C|0.957;T|0.043	0	0	0	0	0
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41063159	41063159	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SPTBN4-94	NM_020971	exon26	c.C5520T	p.F1840F	GTTCTTCAGTGAC	.	135	41	105	0	.	0	0	0	0	0
TPRX1	284355	ucsc.edu	37	19	48305646	48305646	+	Missense_Mutation	SNP	G	G	A	rs112842028		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	TPRX1-90	NM_198479	exon2	c.C622T	p.P208S	GGCCTGGGATCGG	.	38	6	45	0	G|0.500;A|0.500	0	0	0	0	0
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29295883	29295883	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C2orf71-91	NM_001029883	exon1	c.A1245T	p.S415S	AGCCCCTGAGAGC	.	159	58	118	0	.	0	0	0	0	0
GALNT14	79623	broad.mit.edu;bcgsc.ca	37	2	31147655	31147655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GALNT14-93	NM_001253826	exon13	c.C1201T	p.R401C	GGCAGCGCAGATT	.	76	4	85	0	.	0	0	0	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	250	35	117	1	G|1.000;|0.000	0	0	0	0	0
SLC5A7	60482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	108627278	108627278	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SLC5A7-93	NM_021815	exon9	c.C1704T	p.S568S	TGATTCCAGTCCA	.	21	10	18	0	.	0	0	0	0	0
IWS1	55677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128281317	128281317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	IWS1-91	NM_017969	exon2	c.G85C	p.G29R	CCTCACCGTCTGA	.	101	33	47	0	.	0	0	0	0	0
HJURP	55355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234750050	234750050	+	Missense_Mutation	SNP	G	G	A	rs148843421	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	HJURP-69	NM_018410	exon8	c.C1376T	p.P459L	GAGTCCGGGAGGC	.	82	17	77	0	G|1.000;A|0.000	0	0	0	0	0
ANKMY1	51281	bcgsc.ca	37	2	241465261	241465261	+	Silent	SNP	G	G	A	rs35186665	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ANKMY1-90	NM_016552	exon6	c.C909T	p.H303H	GTGGCAGTGAGTC	.	72	4	50	0	G|0.934;A|0.066	0	0	0	0	0
SNED1	25992	hgsc.bcm.edu	37	2	242011084	242011084	+	Missense_Mutation	SNP	T	T	C	rs17440466	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SNED1-72	NM_001080437	exon25	c.T3683C	p.L1228P	CGGAGCTGCGCCT	.	18	18	1	0	T|0.877;C|0.123	0	0	0	0	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278515	278515	+	Silent	SNP	T	T	C	rs2223665	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ZCCHC3-90	NM_033089	exon1	c.T288C	p.D96D	CGGGGATCCGAAG	.	5	5	0	0	T|0.454;C|0.546	0	0	0	0	0
TRIB3	57761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	368653	368653	+	Splice_Site	SNP	A	A	G	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	TRIB3-359	.	.	.	.	TTTACCAGATGCG	.	46	17	40	0	.	4	0	4	0	0
CPXM1	56265	bcgsc.ca	37	20	2776975	2776975	+	Missense_Mutation	SNP	C	C	T	rs41310169	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CPXM1-94	NM_001184699	exon9	c.G1160A	p.R387Q	GTCACCCGTGGGT	.	63	4	68	0	C|0.993;T|0.007	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	.	.	.	.	TCTCCTGCTTAGA	.	64	4	41	1	G|0.994;C|0.006	0	0	0	0	0
R3HDML	140902	bcgsc.ca	37	20	42966025	42966025	+	Silent	SNP	T	T	C	rs1884612	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	R3HDML-90	NM_178491	exon1	c.T228C	p.S76S	GGCCAGTGTGTAC	.	195	8	129	0	T|0.730;C|0.270	0	0	0	0	0
OCSTAMP	128506	broad.mit.edu	37	20	45174026	45174026	+	Silent	SNP	A	A	C	rs202396	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	NM_080721	exon2	c.T987G	p.A329A	CACAGTAGCCTGT	.	62	3	54	0	A|0.805;C|0.195	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	9	8	0	0	C|0.802;G|0.198	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	9	8	0	0	G|0.803;A|0.197	0	0	0	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020669	46020670	+	Splice_Site	DEL	AG	AG	-	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	.	.	.	.	GCCCCCAGCTGCT	.	90	8	17	0	.	0	0	0	0	0
LSS	4047	bcgsc.ca	37	21	47614443	47614443	+	Silent	SNP	A	A	G	rs2254522	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	LSS-90	NM_001001438	exon20	c.T1950C	p.H650H	TGTGTTATGGATC	.	106	5	106	0	A|0.712;C|0.002	18	18	0	0	0
CLDN5	7122	hgsc.bcm.edu	37	22	19511953	19511953	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CLDN5-492	NM_001130861	exon1	c.G81T	p.R27S	GGGTACCCTCTTT	.	24	11	0	0	.	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	4	4	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	4	4	0	0	G|0.826;C|0.174	0	0	0	0	0
SPECC1L	23384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24709364	24709364	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SPECC1L-92	NM_001145468	exon3	c.C237G	p.C79W	CACCTGCCCATCT	.	233	84	164	0	.	0	0	0	0	0
PDCD6IP	10015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33877676	33877676	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PDCD6IP-228	NM_001162429	exon8	c.C990T	p.D330D	TCCAGACCTTAAA	.	153	53	110	0	.	2	2	0	0	0
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41266136	41266136	+	Missense_Mutation	SNP	T	T	C	rs121913407	bycluster	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CTNNB1-24361	NM_001098209	exon3	c.T133C	p.S45P	GCTCCTTCTCTGA	.	134	57	116	0	.	16	10	6	0	0
GPX1	2876	broad.mit.edu	37	3	49395674	49395679	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GPX1-68	.	.	.	.	GACTGGGCCGCCG	.	37	14	4	0	.	0	0	0	0	0
CNBP	7555	hgsc.bcm.edu	37	3	128889366	128889366	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CNBP-226	NM_001127192	exon5	c.A470G	p.E157G	TTGACTTCACTTG	.	77	4	57	0	.	50	50	0	0	0
CPNE4	131034	bcgsc.ca	37	3	131268824	131268824	+	Silent	SNP	T	T	C	rs11915192	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CPNE4-92	NM_130808	exon14	c.A1269G	p.S423S	TGACGCTGACTTG	.	172	6	149	0	T|0.840;C|0.160	0	0	0	0	0
VWA5B2	90113	hgsc.bcm.edu	37	3	183959508	183959508	+	Silent	SNP	A	A	C	rs28606531	byfrequency;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	NM_138345	exon19	c.A3411C	p.P1137P	GGGGCCAGGCCAG	.	10	5	0	0	A|0.927;C|0.073	0	0	0	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	IDUA-91	NM_000203	exon8	c.A1120C	p.T374P	AACAACACCCGCC	.	183	65	60	11	.	8	5	3	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	24	13	2	0	C|0.960;G|0.040	11	3	8	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1389070	1389070	+	Silent	SNP	A	A	G	rs151096093	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	CRIPAK-90	NM_175918	exon1	c.A771G	p.G257G	ATGTGGAGTGCCC	.	43	14	6	0	A|0.981;G|0.019	8	2	6	0	0
GABRB1	2560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	47408836	47408836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GABRB1-92	NM_000812	exon8	c.G973A	p.A325T	GAGTATGCCTTTG	.	98	39	80	0	.	0	0	0	0	0
PF4	5196	broad.mit.edu	37	4	74846972	74846972	+	Silent	SNP	G	G	A	rs62313967		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PF4-90	NM_002619	exon3	c.C255T	p.D85D	TTGCAGGTCCAAG	.	111	9	106	1	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	669	23	417	2	.	0	0	0	0	0
DSPP	1834	mdanderson.org	37	4	88537087	88537087	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DSPP-90	NM_014208	exon5	c.C3273T	p.S1091S	CAGCAGCAATAGC	.	187	31	192	3	.	0	0	0	0	0
DCHS2	54798	broad.mit.edu;bcgsc.ca	37	4	155410822	155410822	+	Silent	SNP	G	G	A	rs4696593	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	DCHS2-94	NM_001142552	exon1	c.C1686T	p.S562S	GGAGGCGCTGACC	.	84	4	47	0	G|0.377;A|0.623	0	0	0	0	0
HSD17B4	3295	ucsc.edu;bcgsc.ca	37	5	118861713	118861713	+	Missense_Mutation	SNP	A	A	G	rs11205	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	HSD17B4-92	NM_001199291	exon20	c.A1750G	p.I584V	AAGGCAATTAAGG	.	46	5	49	0	A|0.591;G|0.409	0	0	0	0	0
RAD50	10111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131927722	131927722	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	RAD50-229	NM_005732	exon11	c.T1789C	p.L597L	GCCAAATTGAAGT	.	144	54	118	0	.	0	0	0	0	0
PCDHB5	26167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140515569	140515569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PCDHB5-95	NM_015669	exon1	c.C553T	p.R185C	CATAATCGCGGAG	.	142	57	136	0	.	0	0	0	0	0
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170648797	170648797	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	RANBP17-524	NM_022897	exon22	c.A2375G	p.N792S	CTCCTAATGGAAT	.	29	13	34	0	.	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086070	5086070	+	Silent	SNP	A	A	G	rs667752		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PPP1R3G-136	NM_001145115	exon1	c.A351G	p.A117A	GGACGCACAGCTC	.	5	5	0	0	A|0.006;G|0.994	1	0	1	0	0
ATXN1	6310	hgsc.bcm.edu	37	6	16327900	16327900	+	Missense_Mutation	SNP	C	C	A	rs200111316		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ATXN1-93	NM_001128164	exon7	c.G642T	p.Q214H	CTGCTGCTGCTGC	.	52	9	14	0	.	1	1	0	0	0
HLA-DQB1	3119	bcgsc.ca	37	6	32629129	32629129	+	Missense_Mutation	SNP	T	T	C	rs1130432	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	HLA-DQB1-22	NM_002123	exon4	c.A767G	p.Q256R	CCTTTCTGACTCC	.	34	5	23	0	T|0.827;C|0.173	0	0	0	0	0
TMEM151B	441151	hgsc.bcm.edu	37	6	44243154	44243154	+	Silent	SNP	C	C	T	rs12194552	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	NM_001137560	exon3	c.C591T	p.R197R	CGAACGCGTCAAC	.	20	11	0	0	C|0.967;T|0.033	0	0	0	0	0
UTRN	7402	ucsc.edu	37	6	145051594	145051594	+	Missense_Mutation	SNP	G	G	T	rs4305737	byfrequency;alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	UTRN-95	NM_007124	exon53	c.G7911T	p.E2637D	TGAAGAGCCAAGA	.	33	4	25	0	G|0.490;A|0.510	0	0	0	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	10	7	0	0	C|0.663;G|0.337	0	0	0	0	0
SAMD12	401474	bcgsc.ca	37	8	119391791	119391791	+	Silent	SNP	T	T	C	rs5020517	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SAMD12-227	NM_207506	exon4	c.A471G	p.L157L	AAGCAATAGGGTA	.	136	6	96	0	T|0.303;C|0.697	0	0	0	0	0
TSNARE1	203062	bcgsc.ca	37	8	143413136	143413136	+	Missense_Mutation	SNP	C	C	T	rs10435683	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	TSNARE1-90	NM_145003	exon5	c.G802A	p.V268I	GGAAGACGTTGGC	.	159	6	154	1	C|0.606;T|0.394	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	4	4	0	0	A|0.118;G|0.882	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990528	144990528	+	Silent	SNP	A	A	G	rs7014582	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PLEC-141	NM_201380	exon32	c.T13872C	p.A4624A	GGAGCCAGCGGTA	.	11	6	1	0	A|0.536;G|0.464	7	6	1	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144999417	144999417	+	Silent	SNP	C	C	T	rs55836855	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PLEC-141	NM_201380	exon31	c.G5091A	p.A1697A	CTGCCGCGCTCGC	.	7	4	3	0	C|0.731;T|0.269	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145107390	145107390	+	Missense_Mutation	SNP	C	C	T	rs185836803		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	OPLAH-68	NM_017570	exon23	c.G3265A	p.V1089I	GGATGACATCCAC	.	19	11	0	0	C|0.998;T|0.002	13	4	9	0	0
NACC2	138151	hgsc.bcm.edu	37	9	138903545	138903545	+	Silent	SNP	G	G	A	rs79175912		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NACC2-90	NM_144653	exon6	c.C1581T	p.D527D	GCCGGCGTCGAAG	.	25	14	3	0	G|0.999;A|0.001	0	0	0	0	0
GPSM1	26086	broad.mit.edu;bcgsc.ca	37	9	139235606	139235606	+	Missense_Mutation	SNP	G	G	C	rs78403475		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	GPSM1-90	NM_015597	exon9	c.G1363C	p.A455P	GGGACAGCACAGG	.	180	7	120	0	G|0.900;C|0.100	0	0	0	0	0
FBXW5	54461	broad.mit.edu	37	9	139837138	139837138	+	Missense_Mutation	SNP	G	G	A	rs148935719	byfrequency	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	FBXW5-226	NM_018998	exon5	c.C536T	p.A179V	AGCAGCGCGAAGG	.	125	5	49	3	G|0.998;A|0.002	0	0	0	0	0
PCSK1N	27344	hgsc.bcm.edu	37	X	48690749	48690749	+	Silent	SNP	C	C	T	rs11538178		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	PCSK1N-130	NM_013271	exon2	c.G117A	p.E39E	GCGGGGCTCCTGC	.	18	8	2	0	C|0.762;T|0.238	0	0	0	0	0
SERPINA7	6906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105277575	105277575	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SERPINA7-226	NM_000354	exon5	c.T1164A	p.D388E	AGATCTATCAATT	.	230	99	233	0	.	0	0	0	0	0
C14orf23	387978	broad.mit.edu	37	14	29261305	29261306	+	RNA	INS	-	-	AAC	rs200251419		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C14orf23-23	.	.	.	.	AGCACTAAAAAAA	.	65	19	78	0	-|0.667;AAC|0.333	0	0	0	0	0
AMN	81693	hgsc.bcm.edu;broad.mit.edu	37	14	103396993	103396994	+	In_Frame_Ins	INS	-	-	GCCGGG	rs36040113		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	AMN-90	NM_030943	exon12	c.1338_1339insGCCGGG	p.F446delinsFAG	TCTGTTCGCCGGG	.	76	14	10	0	-|1.000;|0.000	0	0	0	0	0
SPIRE2	84501	broad.mit.edu	37	16	89916879	89916880	+	In_Frame_Ins	INS	-	-	GAG	rs146569219		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	SPIRE2-90	NM_032451	exon3	c.456_457insGAG	p.P152delinsPE	GGGTCCCGAGGAG	.	52	16	4	0	-|0.923;GAG|0.077	0	0	0	0	0
ULK2	9706	hgsc.bcm.edu	37	17	19770717	19770718	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	ULK2-334	NM_014683	exon1	c.14_15insTGG	p.G5delinsVG	AAGTCACCCACCA	.	43	13	8	2	.	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305774	39305775	+	In_Frame_Ins	INS	-	-	TGGCAGCAGCTGGGG	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	KRTAP4-5-90	NM_033188	exon1	c.246_247insCCCCAGCTGCTGCCA	p.Q82delinsHPSCCQ	GGTGGTCTGGCAG	.	75	59	11	0	.	0	0	0	0	0
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu	37	21	47721985	47721986	+	In_Frame_Ins	INS	-	-	TGGTGG	rs71318063	bycluster;by1000genomes;alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C21orf58-91	NM_058180	exon8	c.897_898insCCACCA	p.H299delinsHHH	CACAGCATGGTGG	.	57	8	6	0	-|0.500;TGG|0.500	0	0	0	0	0
ZNF717	100131827	broad.mit.edu	37	3	75790810	75790811	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	.	NM_001128223	exon3	c.135_136insA	p.T45fs	GTACAGGGTCCTC	.	154	14	116	0	.	0	0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139417461	139417462	+	Frame_Shift_Ins	INS	-	-	G	rs146350322	by1000genomes;alternate_allele	TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	NOTCH1-5459	NM_017617	exon4	c.583_584insC	p.C195fs	TGTGGCAGGTGCC	.	106	8	12	0	.	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095596	90095597	+	Missense_Mutation	DNP	AT	AT	GC	novel		TCGA-OR-A5L3-01A-11D-A29I-10	TCGA-OR-A5L3-10A-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	20de8d93-d3ca-4127-a242-4b4883523118	4a788687-ee2a-41b7-809d-410076aa453b	.	C16orf3-90	NM_001214	exon1	c.A154G	p.I52A	AGGCTATGGGGCA	.	60	0	27	0	T|0.361;C|0.639	0	0	0	0	0