Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SZT2	23334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43891735	43891735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SZT2-144	NM_015284	exon21	c.G2956A	p.V986I	ACCTGCGTCCATG	.	117	50	111	0	.	1	0	1	0	0
SZT2	23334	bcgsc.ca	37	1	43906896	43906896	+	Silent	SNP	A	A	G	rs2027130	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SZT2-144	NM_015284	exon52	c.A7185G	p.E2395E	AACAGAATGTGGG	.	114	6	102	0	A|0.698;G|0.302	0	0	0	0	0
L1TD1	54596	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	62675591	62675591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	L1TD1-92	NM_001164835	exon5	c.C1145T	p.S382F	AGTTTTCCGAGCT	.	198	15	216	0	.	0	0	0	0	0
LCE1E	353135	ucsc.edu;bcgsc.ca	37	1	152760075	152760075	+	Silent	SNP	A	A	G	rs201660535	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LCE1E-90	NM_178353	exon2	c.A300G	p.S100S	GCCCTCAGGGGGC	.	102	24	87	1	A|0.995;G|0.005	0	0	0	0	0
FAM189B	10712	hgsc.bcm.edu	37	1	155220208	155220208	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM189B-154	NM_006589	exon9	c.C1369T	p.R457X	GGGCTCGGGTGGG	.	10	7	1	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5473W	TCTGCGCGGCTCA	.	5	4	1	0	C|0.643;T|0.357	0	0	0	0	0
ECHDC3	79746	bcgsc.ca	37	10	11805249	11805249	+	Silent	SNP	T	T	C	rs61739577	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ECHDC3-90	NM_024693	exon5	c.T618C	p.G206G	TACTGGTGAGCCC	.	69	4	56	0	T|0.807;C|0.193	32	31	0	0	1
PROSER2	254427	hgsc.bcm.edu	37	10	11912144	11912144	+	Silent	SNP	C	C	T	rs17851505	byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_153256	exon4	c.C1047T	p.H349H	TGCGCACGAGGCC	.	10	6	0	0	C|0.932;T|0.068	0	0	0	0	0
WDFY4	57705	bcgsc.ca	37	10	50184949	50184949	+	Silent	SNP	C	C	T	rs2271565	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	WDFY4-22	NM_020945	exon59	c.C9216T	p.C3072C	AACCTGCTGCTGC	.	210	8	232	2	C|0.685;T|0.315	7	7	0	0	0
TBC1D12	23232	hgsc.bcm.edu	37	10	96163039	96163039	+	Silent	SNP	C	C	G	rs2477534	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TBC1D12-68	NM_015188	exon1	c.C669G	p.P223P	CAGCCCCGCCAGC	.	8	8	0	0	C|0.339;G|0.661	0	0	0	0	0
PIK3AP1	118788	bcgsc.ca	37	10	98380277	98380277	+	Silent	SNP	C	C	T	rs3748234	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PIK3AP1-519	NM_152309	exon12	c.G1773A	p.S591S	TATACTCGACTGG	.	113	5	128	1	C|0.452;T|0.548	0	0	0	0	0
RRP12	23223	bcgsc.ca	37	10	99160152	99160152	+	Silent	SNP	A	A	G	rs1048442	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	RRP12-92	NM_001145114	exon2	c.T279C	p.G93G	GAAGGTACCCGAG	.	115	7	146	1	A|0.622;G|0.378	1	1	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	7	7	0	0	A|0.009;G|0.991	1	0	1	0	0
LHPP	64077	hgsc.bcm.edu	37	10	126150523	126150523	+	Missense_Mutation	SNP	C	C	A	rs75426652		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LHPP-90	NM_022126	exon1	c.C92A	p.T31K	GCGGCACGGCCAT	.	6	6	0	0	C|0.919;A|0.081	2	0	2	0	0
CTBP2	1488	bcgsc.ca	37	10	126678148	126678148	+	Missense_Mutation	SNP	G	G	T	rs146419230	alternate_allele	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CTBP2-90	NM_022802	exon9	c.C2897A	p.A966E	GAGGGCGCTTGGG	.	47	4	44	0	.	20	20	0	0	0
FANK1	92565	hgsc.bcm.edu	37	10	127585221	127585221	+	Nonsense_Mutation	SNP	C	C	T	rs202109621		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FANK1-91	NM_145235	exon1	c.C10T	p.Q4X	GAGCCCCAGAGTA	.	88	6	2	0	.	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	5	5	0	0	C|0.860;T|0.140	1	1	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1264691	1264691	+	Missense_Mutation	SNP	T	T	C	rs2943502	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_002458	exon31	c.T6581C	p.M2194T	ACACCATGGCCAC	.	263	55	136	3	T|0.408;C|0.592	0	0	0	0	0
KRTAP5-4	387267	hgsc.bcm.edu;bcgsc.ca	37	11	1643258	1643258	+	Silent	SNP	C	C	T	rs28696103		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001012709	exon1	c.G66A	p.G22G	ACAGCCCCCACAG	.	245	25	66	0	.	0	0	0	0	0
OR52B6	340980	bcgsc.ca	37	11	5602438	5602438	+	Missense_Mutation	SNP	T	T	A	rs2341432	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OR52B6-69	NM_001005162	exon1	c.T332A	p.L111H	ATAGCCTCATTTC	.	203	8	220	0	T|0.358;A|0.642	0	0	0	0	0
OR8U1	219417	ucsc.edu	37	11	56143357	56143357	+	Silent	SNP	G	G	A	rs76949582	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OR8U1-72	NM_001005204	exon1	c.G258A	p.L86L	TTTCTTGTACAAA	.	79	11	75	3	G|0.844;A|0.156	0	0	0	0	0
OR8U1	219417	ucsc.edu;bcgsc.ca	37	11	56143360	56143360	+	Silent	SNP	C	C	T	rs79469149	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OR8U1-72	NM_001005204	exon1	c.C261T	p.Y87Y	CTTGTACAAACAA	.	78	8	76	1	C|0.852;T|0.148	0	0	0	0	0
HNRNPUL2	221092	hgsc.bcm.edu	37	11	62494434	62494434	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	HNRNPUL2-22	NM_001079559	exon1	c.C195T	p.A65A	CGACGCGGCCACA	.	4	4	0	0	.	0	0	0	0	0
VEGFB	7423	hgsc.bcm.edu	37	11	64005029	64005029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	VEGFB-90	NM_003377	exon6	c.C548T	p.T183I	GCACCACCAGCGC	.	21	17	2	0	.	223	19	204	0	0
ZDHHC24	254359	bcgsc.ca	37	11	66307025	66307025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZDHHC24-68	NM_207340	exon3	c.C830A	p.A277E	ACATCTGCTGTGG	.	59	4	48	0	.	46	46	0	0	0
PC	5091	broad.mit.edu	37	11	66631380	66631380	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PC-228	NM_000920	exon11	c.C1233T	p.S411S	GAAGGCGGAAGCA	.	158	5	100	1	.	9	9	0	0	0
RSF1	51773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	77412599	77412599	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	RSF1-93	NM_016578	exon6	c.A1675G	p.T559A	ACTCGGTGGAAGA	.	69	28	66	0	.	5	2	3	0	0
FAM181B	220382	hgsc.bcm.edu	37	11	82443754	82443754	+	Missense_Mutation	SNP	G	G	A	rs147683846		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM181B-135	NM_175885	exon1	c.C1018T	p.P340S	CGCGGGGGGCAGT	.	11	7	0	0	G|0.982;A|0.018	2	1	1	0	0
TMPRSS5	80975	bcgsc.ca	37	11	113570385	113570385	+	Missense_Mutation	SNP	C	C	T	rs11601425	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TMPRSS5-1	NM_030770	exon3	c.G137A	p.R46Q	CCACGTCGCATGG	.	316	9	210	2	C|0.946;T|0.054	0	0	0	0	0
TAPBPL	55080	bcgsc.ca	37	12	6562823	6562823	+	Missense_Mutation	SNP	C	C	T	rs2041387	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TAPBPL-90	NM_018009	exon3	c.C506T	p.A169V	ATGAGGCGCTCTG	.	136	6	93	0	C|0.744;N|0.000	17	17	0	0	0
TAPBPL	55080	bcgsc.ca	37	12	6562836	6562836	+	Silent	SNP	G	G	A	rs2041388	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TAPBPL-90	NM_018009	exon3	c.G519A	p.P173P	GCACCCGACGCTG	.	124	6	81	0	G|0.800;A|0.200	18	18	0	0	0
ZNF384	171017	hgsc.bcm.edu	37	12	6777075	6777075	+	Silent	SNP	C	C	T	rs1052680	alternate_allele	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF384-1083	NM_001135734	exon11	c.G1539A	p.Q513Q	TTGCTGCTGCTGC	.	63	4	17	0	C|1.000;|0.000	18	18	0	0	0
FAM90A1	55138	ucsc.edu	37	12	8375048	8375048	+	Missense_Mutation	SNP	G	G	T	rs17857270	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM90A1-91	NM_018088	exon7	c.C765A	p.S255R	CTGGGGGCTGACG	.	77	8	11	0	G|0.859;T|0.141	1	0	1	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	375	21	252	11	G|0.998;A|0.002	657	435	222	0	0
KRT83	3889	broad.mit.edu	37	12	52709845	52709845	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	KRT83-91	NM_002282	exon7	c.C1094A	p.A365D	CTGAGGGCCGCCT	.	138	17	26	3	.	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713511	107713511	+	Missense_Mutation	SNP	G	G	C	rs961498	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	BTBD11-93	NM_001018072	exon1	c.G794C	p.G265A	GCCCTGGGTCAGG	.	4	4	0	0	G|0.588;C|0.412	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu	37	12	119594512	119594512	+	Missense_Mutation	SNP	G	G	C	rs140426282		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SRRM4-2	NM_194286	exon13	c.G1745C	p.R582P	GCAGCCGGAGCCG	.	15	5	1	0	G|0.989;C|0.011	0	0	0	0	0
SCARB1	949	hgsc.bcm.edu	37	12	125348263	125348263	+	Missense_Mutation	SNP	C	C	T	rs4238001	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SCARB1-226	NM_005505	exon1	c.G4A	p.G2S	AGCAGCCCATGTC	.	10	6	0	0	C|0.935;T|0.065	40	13	27	0	0
FZD10	11211	broad.mit.edu	37	12	130647553	130647553	+	Missense_Mutation	SNP	C	C	A	rs200800452		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FZD10-658	NM_007197	exon1	c.C66A	p.S22R	CATCAGCTCCATG	.	180	22	45	1	.	0	0	0	0	0
MYH6	4624	broad.mit.edu	37	14	23862646	23862646	+	Missense_Mutation	SNP	C	C	A	rs143978652	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MYH6-94	NM_002471	exon23	c.G3010T	p.A1004S	GATGGGCCTCTTG	.	192	8	168	0	C|0.999;A|0.001	0	0	0	0	0
DHRS4	10901	ucsc.edu	37	14	24424289	24424289	+	Silent	SNP	T	T	C	rs1127279		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DHRS4-91	NM_021004	exon2	c.T174C	p.H58H	GGCCCATGTGGTC	.	368	110	82	3	.	46	46	0	0	0
PLEKHG3	26030	hgsc.bcm.edu	37	14	65209970	65209970	+	Missense_Mutation	SNP	G	G	A	rs201046500		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PLEKHG3-91	NM_015549	exon15	c.G3041A	p.R1014Q	GCGGCCGGCCCCG	.	21	10	1	0	G|0.996;A|0.004	0	0	0	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889708	23889708	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_019066	exon1	c.T3182A	p.I1061N	TTGATGATATCTA	.	164	4	190	0	.	0	0	0	0	0
LACTB	114294	hgsc.bcm.edu	37	15	63414083	63414083	+	Missense_Mutation	SNP	A	A	C	rs34317102	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LACTB-90	NM_171846	exon1	c.A13C	p.M5L	CGGCTCATGTCAG	.	10	10	0	0	A|0.226;C|0.774	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	8	8	0	0	C|0.452;T|0.548	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	7	6	0	0	G|0.479;T|0.521	0	0	0	0	0
CHRNB4	1143	bcgsc.ca	37	15	78921762	78921762	+	Silent	SNP	G	G	A	rs3743072	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CHRNB4-90	NM_000750	exon5	c.C885T	p.I295I	CTTGCCGATGAGA	.	237	9	237	3	G|0.962;A|0.038	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79051801	79051801	+	Missense_Mutation	SNP	C	C	A	rs201472223		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ADAMTS7-226	NM_014272	exon24	c.G5023T	p.A1675S	AGGGGGCGCCGTG	.	25	8	0	0	.	5	5	0	0	0
ADAMTS7	11173	ucsc.edu	37	15	79089111	79089111	+	Missense_Mutation	SNP	A	A	G	rs3825807	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ADAMTS7-226	NM_014272	exon4	c.T640C	p.S214P	GTCGAGACTCCAG	.	50	12	10	0	A|0.704;G|0.296	0	0	0	0	0
FAM174B	400451	broad.mit.edu	37	15	93198679	93198684	+	In_Frame_Del	DEL	TGGAGC	TGGAGC	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM174B-90	NM_207446	exon1	c.206_211del	p.69_71del	TGCTGTTGGAGCT	.	89	49	21	0	.	0	0	0	0	0
MRPS34	65993	hgsc.bcm.edu	37	16	1823054	1823054	+	Missense_Mutation	SNP	C	C	G	rs11552432		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MRPS34-92	NM_023936	exon1	c.G67C	p.E23Q	GTTGCTCCCGCAG	.	12	6	1	0	C|0.014;G|0.986	7	3	4	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	6	5	0	0	C|0.615;G|0.385	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2049849	2049849	+	Silent	SNP	T	T	C	rs12149722		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF598-432	NM_178167	exon11	c.A1701G	p.T567T	GGGGCGTGTGCTC	.	6	4	0	0	T|0.897;C|0.103	23	8	15	0	0
MTHFSD	64779	bcgsc.ca	37	16	86575737	86575737	+	Silent	SNP	C	C	T	rs3829533	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MTHFSD-90	NM_001159377	exon6	c.G525A	p.T175T	CACCGGCGTCTCC	.	167	7	108	0	C|0.895;T|0.105	10	10	0	0	0
ZNF469	84627	broad.mit.edu	37	16	88494947	88494947	+	Missense_Mutation	SNP	T	T	C	rs11648572	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001127464	exon1	c.T1069C	p.S357P	CTCTCTTCCCCTG	.	196	7	52	1	T|0.018;C|0.982	0	0	0	0	0
ZNF469	84627	broad.mit.edu	37	16	88494976	88494976	+	Missense_Mutation	SNP	A	A	C	rs11640794	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001127464	exon1	c.A1098C	p.R366S	CCCGAGACCCTTC	.	221	8	75	1	A|0.169;C|0.831	0	0	0	0	0
ZNF469	84627	hgsc.bcm.edu	37	16	88497394	88497394	+	Silent	SNP	T	T	C	rs111557381	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001127464	exon2	c.T3432C	p.R1144R	GGCCCGTGGCCCG	.	9	9	0	0	T|0.962;C|0.038	0	0	0	0	0
ZC3H18	124245	broad.mit.edu	37	16	88677692	88677693	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZC3H18-69	NM_144604	exon8	c.1223_1224del	p.408_408del	GGGAGCGAGAGAG	.	199	7	114	0	.	0	0	0	0	0
KDM6B	23135	broad.mit.edu	37	17	7752795	7752795	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	KDM6B-205	NM_001080424	exon11	c.A3189C	p.T1063T	GCCCACACCCCCG	.	67	7	30	0	.	5	5	0	0	0
ACACA	31	bcgsc.ca	37	17	35609866	35609866	+	Silent	SNP	C	C	T	rs2229416	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ACACA-154	NM_198834	exon15	c.G1923A	p.Q641Q	GTTCATCTGAAAG	.	76	5	65	0	T|0.139;C|0.861	0	0	0	0	0
KRTAP4-8	728224	hgsc.bcm.edu	37	17	39254013	39254013	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_031960	exon1	c.C324G	p.S108R	GCAGCAGCTGGAC	.	123	22	18	0	.	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;bcgsc.ca	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_033059	exon1	c.C481G	p.L161V	GACGCAGGCAGCA	.	190	37	82	0	G|0.500;C|0.500	0	0	0	0	0
KRTAP4-11	653240	ucsc.edu	37	17	39274157	39274157	+	Silent	SNP	G	G	A	rs76095941		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_033059	exon1	c.C411T	p.P137P	GCAGCTGGGGTGG	.	222	87	16	2	G|0.500;A|0.500	0	0	0	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG	.	135	10	22	0	.	0	0	0	0	0
BPTF	2186	hgsc.bcm.edu	37	17	65955758	65955758	+	Silent	SNP	T	T	C	rs202116659		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	BPTF-94	NM_182641	exon24	c.T8028C	p.A2676A	ACCAGCTCCTCCA	.	50	9	63	0	.	7	7	0	0	0
TMC6	11322	bcgsc.ca	37	17	76121864	76121864	+	Missense_Mutation	SNP	A	A	G	rs2748427	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TMC6-90	NM_001127198	exon5	c.T373C	p.W125R	TGGGCCAGGCGGA	.	147	109	8	0	A|0.702;G|0.298	1	1	0	0	0
CBX4	8535	hgsc.bcm.edu	37	17	77808133	77808133	+	Silent	SNP	G	G	A	rs62075209		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CBX4-228	NM_003655	exon5	c.C1308T	p.P436P	GCAGGTGGGGGTG	.	5	5	0	0	G|0.993;A|0.007	0	0	0	0	0
MADCAM1	8174	bcgsc.ca	37	19	501701	501701	+	Missense_Mutation	SNP	G	G	A	rs72970252	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MADCAM1-90	NM_130760	exon4	c.G700A	p.D234N	CCTCCCGACACCA	.	153	10	97	0	G|0.879;A|0.121	0	0	0	0	0
FAM108A1	81926	hgsc.bcm.edu	37	19	1881488	1881488	+	Silent	SNP	G	G	A	rs200425255		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FAM108A1-90	NM_031213	exon2	c.C78T	p.L26L	GAAGGCGAGCTTG	.	11	7	0	0	G|0.999;A|0.001	25	8	17	0	0
LINGO3	645191	hgsc.bcm.edu	37	19	2291501	2291501	+	Missense_Mutation	SNP	T	T	A	rs201142184		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001101391	exon2	c.A275T	p.H92L	TCCACGTGCGCGA	.	47	38	0	0	T|0.998;A|0.002	0	0	0	0	0
PTPRS	5802	hgsc.bcm.edu	37	19	5222831	5222831	+	Missense_Mutation	SNP	G	G	A	rs2230610	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PTPRS-357	NM_002850	exon18	c.C2972T	p.A991V	TTCTCCGCGCCCG	.	7	6	0	0	G|0.979;A|0.021	3	0	2	1	0
CAMSAP3	57662	bcgsc.ca	37	19	7675369	7675369	+	Silent	SNP	C	C	T	rs62113420	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001080429	exon8	c.C849T	p.C283C	GGTGTGCTTGAAG	.	48	4	40	0	C|0.897;T|0.103	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	23	21	0	0	C|0.788;T|0.212	3	0	3	0	0
CCDC105	126402	hgsc.bcm.edu	37	19	15133926	15133926	+	Missense_Mutation	SNP	C	C	A	rs8112667	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CCDC105-91	NM_173482	exon7	c.C1495A	p.P499T	GCGGACCCCTAGT	.	6	6	0	0	C|0.671;A|0.329	0	0	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OCEL1-68	NM_024578	exon2	c.C123A	p.T41T	CAGGACCCGCCCA	.	7	5	0	0	C|0.734;A|0.266	12	1	11	0	0
IGFLR1	79713	hgsc.bcm.edu	37	19	36231288	36231288	+	Missense_Mutation	SNP	C	C	T	rs140952221	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	IGFLR1-90	NM_024660	exon3	c.G335A	p.C112Y	TCTCTGCAGCGCC	.	8	7	1	0	C|0.989;T|0.011	0	0	0	0	0
ZNF420	147923	broad.mit.edu	37	19	37618242	37618242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF420-90	NM_144689	exon5	c.A349G	p.M117V	GACAAAATGTCCA	.	225	4	212	0	.	1	1	0	0	0
ZNF285	26974	ucsc.edu	37	19	44891043	44891043	+	Missense_Mutation	SNP	G	G	T	rs77661661		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ZNF285-94	NM_152354	exon4	c.C1364A	p.P455Q	TTGTATGGTTTCT	.	183	28	163	4	.	1	1	0	0	0
SCAF1	58506	hgsc.bcm.edu	37	19	50154607	50154607	+	Missense_Mutation	SNP	C	C	T	rs146455893	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SCAF1-68	NM_021228	exon7	c.C961T	p.R321C	AGCCCCCGCCCGG	.	15	11	1	0	A|0.000;C|0.999;T|0.001	7	2	5	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869899	55869899	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001145402	exon9	c.A2337C	p.P779P	GCCCCATGGCTGC	.	68	5	30	0	.	0	0	0	0	0
FAM71E2	284418	hgsc.bcm.edu	37	19	55869902	55869902	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001145402	exon9	c.G2334A	p.Q778Q	CCATGGCTGCTCC	.	67	5	28	0	.	0	0	0	0	0
NLRP5	126206	bcgsc.ca	37	19	56572875	56572875	+	Missense_Mutation	SNP	G	G	A	rs36118060	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NLRP5-162	NM_153447	exon15	c.G3584A	p.R1195Q	ATGACCGGTACTG	.	204	7	190	2	G|0.825;A|0.175	0	0	0	0	0
ZNF814	730051	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58385748	58385748	+	Missense_Mutation	SNP	G	G	A	rs145250945		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001144989	exon3	c.C1010T	p.A337V	AAGCTAGCATATT	.	154	63	82	1	.	2	2	0	0	0
ZNF814	730051	ucsc.edu;bcgsc.ca	37	19	58385762	58385762	+	Silent	SNP	C	C	G	rs199732634		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001144989	exon3	c.G996C	p.S332S	GCTAAACGATTTC	.	131	44	74	2	.	1	1	0	0	0
SIX3	6496	hgsc.bcm.edu	37	2	45171842	45171842	+	Silent	SNP	A	A	G	rs62840660	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SIX3-90	NM_005413	exon2	c.A942G	p.A314A	GCGCGCAGACACC	.	5	5	0	0	A|0.059;G|0.941	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	4	4	0	0	A|0.029;G|0.971	0	0	0	0	0
FMNL2	114793	hgsc.bcm.edu	37	2	153476069	153476069	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FMNL2-516	NM_052905	exon15	c.C1674A	p.P558P	GCCGCCCCCTCCT	.	10	5	15	0	.	0	0	0	0	0
EFHD1	80303	bcgsc.ca	37	2	233537125	233537125	+	Missense_Mutation	SNP	A	A	G	rs11550699	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	EFHD1-90	NM_025202	exon3	c.A557G	p.K186R	GTGTCAAAGGTGC	.	255	7	258	0	A|0.685;G|0.315	1	1	0	0	0
C2orf54	79919	bcgsc.ca	37	2	241828012	241828012	+	Silent	SNP	T	T	C	rs6708304	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	C2orf54-90	NM_001085437	exon4	c.A948G	p.E316E	CTGCAGTTCTGCC	.	119	99	9	0	T|0.464;C|0.536	0	0	0	0	0
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2573005	2573005	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TMC2-93	NM_080751	exon8	c.G884A	p.R295Q	TGCCTCGGGCTGA	.	189	61	130	0	.	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	8	6	0	0	C|0.769;T|0.231	2	0	2	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	.	.	.	.	GCCCCCCTGCTGC	.	62	19	15	0	.	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	9	9	0	0	C|0.138;G|0.862	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SCARF2-341	NM_153334	exon11	c.C2181G	p.R727R	CGGGGGGCGCGGC	.	9	9	0	0	G|0.826;C|0.174	0	0	0	0	0
CRYBB1	1414	bcgsc.ca	37	22	26995525	26995525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CRYBB1-91	NM_001887	exon6	c.C688A	p.R230S	GGCGACGCAGGGA	.	169	6	155	0	.	2	2	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28195386	28195386	+	Missense_Mutation	SNP	C	C	A	rs45589338	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MN1-993	NM_002430	exon1	c.G1146T	p.Q382H	GCCCTGCTGGGGC	.	7	5	0	0	C|0.986;A|0.014	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	6	5	0	0	A|0.354;G|0.646	0	0	0	0	0
NPTXR	23467	broad.mit.edu	37	22	39222627	39222627	+	Missense_Mutation	SNP	G	G	A	rs34637063	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NPTXR-92	NM_014293	exon3	c.C976T	p.R326W	TGGACCGCAGCCA	.	171	4	36	0	G|0.996;A|0.004	3	3	0	0	0
PRR5	55615	hgsc.bcm.edu	37	22	45132831	45132831	+	Missense_Mutation	SNP	G	G	A	rs56299305	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PRR5-23	NM_001198721	exon10	c.G940A	p.E314K	TGCCCCGAGCCTC	.	30	10	0	0	G|0.995;A|0.005	7	5	2	0	0
TTC38	55020	bcgsc.ca	37	22	46664412	46664412	+	Missense_Mutation	SNP	C	C	T	rs117135869	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TTC38-91	NM_017931	exon2	c.C35T	p.A12V	TGTAGGCCTGGAA	.	151	8	155	4	C|0.990;T|0.010	0	0	0	0	0
TTLL3	26140	bcgsc.ca	37	3	9870857	9870857	+	Silent	SNP	G	G	A	rs2290303	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TTLL3-585	NM_001025930	exon10	c.G1761A	p.Q587Q	CGTGCAGTGTCGG	.	286	8	248	3	G|0.623;A|0.377	15	15	0	0	0
FANCD2	2177	hgsc.bcm.edu;bcgsc.ca	37	3	10108898	10108898	+	Silent	SNP	A	A	G	rs77246387	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FANCD2-229	NM_001018115	exon26	c.A2391G	p.V797V	GATTGTAAATGCC	.	89	7	85	0	A|0.909;G|0.091	0	0	0	0	0
FANCD2	2177	hgsc.bcm.edu;bcgsc.ca	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FANCD2-229	NM_001018115	exon26	c.G2406T	p.Q802H	CTGCCAGGAAACA	.	119	6	96	0	G|0.990;T|0.010	1	1	0	0	0
NR2C2	7182	bcgsc.ca	37	3	15046088	15046088	+	Silent	SNP	T	T	C	rs77813966	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NR2C2-226	NM_003298	exon3	c.T97C	p.L33L	GGCCCATTGAGTG	.	189	7	237	1	T|0.968;C|0.032	0	0	0	0	0
PRSS42	339906	hgsc.bcm.edu	37	3	46875395	46875395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PRSS42-91	NM_182702	exon1	c.C191A	p.T64K	AAGGACGTAAACA	.	78	4	29	0	.	0	0	0	0	0
IQCF1	132141	bcgsc.ca	37	3	51930850	51930850	+	Missense_Mutation	SNP	T	T	C	rs57859638	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	IQCF1-91	NM_152397	exon3	c.A169G	p.K57E	ATACTTTTTCTGA	.	99	6	107	0	T|0.851;C|0.149	0	0	0	0	0
PLXNA1	5361	broad.mit.edu	37	3	126707544	126707544	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PLXNA1-93	NM_032242	exon1	c.T108G	p.G36G	CGGGGGTTCACAG	.	144	36	24	2	.	0	0	0	0	0
PLXNA1	5361	hgsc.bcm.edu	37	3	126733053	126733053	+	Silent	SNP	C	C	T	rs11719489	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PLXNA1-93	NM_032242	exon11	c.C2439T	p.R813R	CCTGCGCGAGAGC	.	13	11	0	0	C|0.900;T|0.100	0	0	0	0	0
KLHL24	54800	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183388949	183388949	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	KLHL24-91	NM_017644	exon6	c.G1352T	p.S451I	TGACTAGCTGTGT	.	218	37	231	1	.	9	7	2	0	0
OTOP1	133060	hgsc.bcm.edu	37	4	4228456	4228456	+	Silent	SNP	G	G	T	rs73191872	bycluster;by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	OTOP1-92	NM_177998	exon1	c.C136A	p.R46R	CGCCCCGCCGGGG	.	22	7	2	0	.	0	0	0	0	0
WFS1	7466	bcgsc.ca	37	4	6302545	6302545	+	Silent	SNP	C	C	T	rs56072215	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	WFS1-91	NM_001145853	exon8	c.C1023T	p.F341F	CTTCTTCGCCTTC	.	344	8	355	1	C|0.951;T|0.049	14	14	0	0	0
NKX3-2	579	hgsc.bcm.edu	37	4	13545716	13545716	+	Missense_Mutation	SNP	G	G	C	rs202191746		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NKX3-2-68	NM_001189	exon1	c.C323G	p.A108G	GCGTCCGCGCAGC	.	13	8	0	0	G|0.998;C|0.002	0	0	0	0	0
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68510476	68510476	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UBA6-90	NM_018227	exon17	c.C1416A	p.G472G	TTCACAGCCTATG	.	183	23	194	0	.	2	1	1	0	0
UGT2B11	10720	ucsc.edu	37	4	70066376	70066376	+	Missense_Mutation	SNP	C	C	G	rs144149579	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UGT2B11-93	NM_001073	exon6	c.G1372C	p.D458H	CTCGATCCAGGGG	.	77	18	83	5	C|0.932;G|0.068	0	0	0	0	0
UGT2B11	10720	ucsc.edu	37	4	70066408	70066408	+	Missense_Mutation	SNP	C	C	A	rs200919649		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UGT2B11-93	NM_001073	exon6	c.G1340T	p.R447I	TGAATTCTTGATA	.	55	10	61	2	.	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu	37	5	5140798	5140798	+	Missense_Mutation	SNP	C	C	T	rs61754840		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	ADAMTS16-275	NM_139056	exon2	c.C94T	p.P32S	ATGGGACCCGCAG	.	16	6	0	0	C|0.995;T|0.005	0	0	0	0	0
TRERF1	55809	broad.mit.edu	37	6	42236973	42236973	+	Missense_Mutation	SNP	C	C	T	rs61756353	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TRERF1-230	NM_033502	exon5	c.G356A	p.G119D	TGGTAGCCATCAG	.	114	4	113	0	C|0.997;T|0.003	0	0	0	0	0
DST	667	bcgsc.ca	37	6	56327849	56327849	+	Missense_Mutation	SNP	C	C	T	rs11758339	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DST-523	NM_015548	exon82	c.G15124A	p.A5042T	CCTCTGCAGATGG	.	127	6	100	1	C|0.788;T|0.212	1	1	0	0	0
DST	667	bcgsc.ca	37	6	56484758	56484758	+	Silent	SNP	C	C	T	rs2230862	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DST-523	NM_001723	exon23	c.G4074A	p.K1358K	TTTCTGCTTGTCA	.	124	6	138	0	C|0.609;T|0.391	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271952	132271952	+	Missense_Mutation	SNP	G	G	C	rs7451102		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CTGF-90	NM_001901	exon2	c.C247G	p.H83D	CGAAGTGACAGAA	.	6	6	0	0	G|0.000;C|1.000	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271959	132271959	+	Silent	SNP	T	T	G	rs12206231		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CTGF-90	NM_001901	exon2	c.A240C	p.L80L	ACAGAATAGGCCC	.	6	6	0	0	T|0.000;G|1.000	0	0	0	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CTGF-90	NM_001901	exon2	c.A219C	p.P73P	GTCGCATGGGTCG	.	4	4	0	0	T|0.000;G|1.000	7	0	7	0	0
MTRF1L	54516	hgsc.bcm.edu	37	6	153323806	153323806	+	Silent	SNP	A	A	G	rs3818126	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MTRF1L-90	NM_019041	exon1	c.T15C	p.V5V	CCACAGAACCCGG	.	9	4	1	0	A|0.800;G|0.200	0	0	0	0	0
TBP	6908	bcgsc.ca	37	6	170871094	170871094	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	TBP-91	NM_003194	exon3	c.G270A	p.Q90Q	GCAGCAGCAGCAG	.	102	9	48	0	.	78	75	2	0	1
VWDE	221806	broad.mit.edu;bcgsc.ca	37	7	12376811	12376811	+	Missense_Mutation	SNP	A	A	C	rs2192828	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	VWDE-68	NM_001135924	exon25	c.T4454G	p.F1485C	TTTTGGAATCTCC	.	136	6	177	0	A|0.306;C|0.694	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	GARS-91	NM_002047	exon1	c.C124G	p.P42A	TCCTGCCCCCCGA	.	6	5	0	0	C|0.329;G|0.671	2	1	1	0	0
NT5C3A	0	ucsc.edu	37	7	33054388	33054388	+	Missense_Mutation	SNP	T	T	C	rs79747830	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001002010	exon9	c.A965G	p.D322G	GATTCATCTTGTA	.	68	15	48	2	T|0.969;C|0.031	27	27	0	0	0
MYO1G	64005	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	45009379	45009387	+	In_Frame_Del	DEL	GCCAGCAGA	GCCAGCAGA	-	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	GCCAGCAGA	GCCAGCAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MYO1G-137	NM_033054	exon11	c.1420_1428del	p.474_476del	GATGGTGCCAGCA	.	126	38	77	0	.	0	0	0	0	0
AUTS2	26053	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70227999	70227999	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	AUTS2-92	NM_001127231	exon7	c.A886G	p.K296E	GTGCTTAAAGACC	.	106	57	101	1	.	0	0	0	0	0
STEAP1	26872	ucsc.edu	37	7	89790570	89790570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	STEAP1-522	NM_012449	exon3	c.G536C	p.S179T	TTTATAGTCTGTC	.	117	16	126	3	.	2	2	0	0	0
LRCH4	4034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100175783	100175783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LRCH4-136	NM_002319	exon7	c.A947T	p.E316V	CTTACCTCATTTC	.	124	12	111	0	.	13	6	7	0	0
DGKI	9162	bcgsc.ca	37	7	137304602	137304602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DGKI-228	NM_004717	exon8	c.C961A	p.P321T	AAGTGGGCGGGAC	.	59	4	73	0	.	0	0	0	0	0
NOM1	64434	hgsc.bcm.edu	37	7	156742501	156742501	+	Missense_Mutation	SNP	C	C	G	rs6969990	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	NOM1-90	NM_138400	exon1	c.C70G	p.R24G	ATGAAGCGCAGAG	.	11	10	0	0	C|0.663;G|0.337	0	0	0	0	0
UBE3C	9690	hgsc.bcm.edu	37	7	157013436	157013436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UBE3C-704	NM_014671	exon15	c.G1968T	p.M656I	GCGGATGGGGAGG	.	66	4	66	0	.	1	1	0	0	0
GPR124	25960	broad.mit.edu	37	8	37698805	37698805	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	GPR124-157	NM_032777	exon19	c.C2949A	p.G983G	CAGCGGCCCCCTC	.	49	6	24	0	.	2	2	0	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699516	37699516	+	Silent	SNP	C	C	T	rs7010546	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	GPR124-157	NM_032777	exon19	c.C3660T	p.G1220G	GAGCGGCAGTCTG	.	5	5	0	0	C|0.479;G|0.000;T|0.520	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144940290	144940290	+	Missense_Mutation	SNP	C	C	G	rs201976887		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	EPPK1-25	NM_031308	exon1	c.G7132C	p.D2378H	TGGGGTCGGCCAG	.	442	29	68	0	.	0	0	0	0	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940543	144940543	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	EPPK1-25	NM_031308	exon1	c.C6879T	p.G2293G	CTCGCCGCCCACC	.	111	13	5	0	.	0	0	0	0	0
DMRT1	1761	hgsc.bcm.edu	37	9	841971	841971	+	Missense_Mutation	SNP	T	T	A	rs3739583	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	DMRT1-515	NM_021951	exon1	c.T133A	p.S45T	AGCGGCTCGAGCG	.	8	6	1	0	T|0.317;A|0.683	0	0	0	0	0
UBAP2	55833	bcgsc.ca	37	9	33941759	33941759	+	Missense_Mutation	SNP	T	T	C	rs307658	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	UBAP2-94	NM_018449	exon16	c.A1817G	p.N606S	GCAGAATTCAGTG	.	145	5	163	0	T|0.481;G|0.077	1	1	0	0	0
FGD3	89846	bcgsc.ca	37	9	95738781	95738781	+	Silent	SNP	C	C	A	rs3802381	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	FGD3-228	NM_001083536	exon3	c.C243A	p.P81P	CAGTCCCTCCTCC	.	168	6	108	2	C|0.385;A|0.615	0	0	0	0	0
PTPDC1	138639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	96846961	96846961	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PTPDC1-227	NM_152422	exon1	c.A149T	p.K50M	CCACGAAGCTGCT	.	124	18	57	0	.	0	0	0	0	0
LHX3	8022	hgsc.bcm.edu	37	9	139096812	139096812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	LHX3-91	NM_178138	exon1	c.C47T	p.A16V	GCGGCGGCCCCGG	.	42	33	0	0	.	0	0	0	0	0
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3240298	3240298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	MXRA5-136	NM_015419	exon5	c.G3428C	p.S1143T	TGAGTGCTCATGG	.	119	55	139	0	.	0	0	0	0	0
RBMXL3	139804	broad.mit.edu;bcgsc.ca	37	X	114426765	114426765	+	Missense_Mutation	SNP	C	C	T	rs11795689		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001145346	exon1	c.C2761T	p.P921S	CGCTCGCCCAATG	.	181	6	68	0	C|0.923;T|0.077	0	0	0	0	0
SPRY3	10251	bcgsc.ca	37	X	155004280	155004280	+	Silent	SNP	A	A	G	rs306888	byfrequency	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SPRY3-136	NM_005840	exon2	c.A747G	p.Q249Q	GTGCCAACAGGGC	.	156	6	169	0	A|0.771;G|0.229	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	CELSR2-526	NM_001408	exon1	c.34_35insCGC	p.T12delinsTP	CTCCCAACGCCGC	.	10	10	0	0	-|0.389;CGC|0.611	0	0	0	0	0
KRTAP4-3	85290	broad.mit.edu;bcgsc.ca	37	17	39324229	39324230	+	In_Frame_Ins	INS	-	-	GCAGCAGGTGGTCAG	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	KRTAP4-3-22	NM_033187	exon1	c.196_197insCTGACCACCTGCTGC	p.R66delinsLTTCCR	TGGTCCTGCAGCA	.	353	80	147	0	.	0	0	0	0	0
SHANK1	50944	broad.mit.edu	37	19	51165375	51165376	+	Frame_Shift_Ins	INS	-	-	C	rs146869643	by1000genomes	TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	SHANK1-153	NM_016148	exon23	c.6333_6334insG	p.G2111fs	CGCCAAACCCAGC	.	240	8	172	0	.	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	AGCGTCATCTTGT	.	429	0	493	0	.	0	0	0	0	0
PRAMEF2	65122	bcgsc.ca	37	1	12919623	12919624	+	Missense_Mutation	DNP	CC	CC	TG	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	PRAMEF2-68	NM_023014	exon3	c.C364G	p.L122V	TGGGCCCTGTCCT	.	289	0	279	0	C|0.896;G|0.104	0	0	0	0	0
AKR7L	246181	bcgsc.ca	37	1	19600376	19600377	+	RNA	DNP	TT	TT	GC	novel		TCGA-OR-A5L5-01A-11D-A29I-10	TCGA-OR-A5L5-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ca5ac644-7d21-424b-b263-9600662fc544	ff435c22-e07f-452a-a289-d9e494094897	.	AKR7L-90	.	.	.	.	GCCCATTCGGAGC	.	188	0	46	0	.	0	0	0	0	0