Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCC	9696	hgsc.bcm.edu	37	1	17265507	17265507	+	Missense_Mutation	SNP	C	C	T	rs201951425	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CROCC-137	NM_014675	exon12	c.C1478T	p.P493L	GGACCCCGTCCCC	.	14	8	0	0	C|0.983;T|0.017	0	0	0	0	0
ST6GALNAC5	81849	broad.mit.edu	37	1	77334277	77334279	+	In_Frame_Del	DEL	GCA	GCA	-	rs113832855	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ST6GALNAC5-92	NM_030965	exon2	c.111_113del	p.37_38del	GCCCCCGCAGCAG	.	194	8	87	0	GCA|0.500;-|0.500	0	0	0	0	0
NBPF4	148545	broad.mit.edu	37	1	108769307	108769307	+	Silent	SNP	G	G	A	rs2582071		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_001143989	exon14	c.C1869T	p.S623S	CTCTGCGCTCTCA	.	137	7	384	0	G|0.500;A|0.500	0	0	0	0	0
TMEM72	643236	bcgsc.ca	37	10	45430462	45430462	+	Silent	SNP	C	C	T	rs17417442	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TMEM72-90	NM_001123376	exon5	c.C708T	p.A236A	CCTCGCCGAAGGT	.	124	6	124	1	C|0.634;T|0.366	0	0	0	0	0
GDF10	2662	hgsc.bcm.edu	37	10	48438647	48438649	+	In_Frame_Del	DEL	GCA	GCA	-	rs71522826	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	GCA	GCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GDF10-650	NM_004962	exon1	c.62_64del	p.21_22del	ACAACGGCAGCAG	.	34	28	2	1	-|0.500;CAG|0.500	0	0	0	0	0
TET1	80312	broad.mit.edu	37	10	70451264	70451264	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TET1-663	NM_030625	exon12	c.A6104C	p.H2035P	TTGAGCACCCCAA	.	55	13	62	9	.	0	0	0	0	0
PI4K2A	55361	bcgsc.ca	37	10	99410790	99410790	+	Silent	SNP	T	T	C	rs7915721	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PI4K2A-226	NM_018425	exon2	c.T528C	p.P176P	CTGTCCTTGCTGC	.	145	5	169	1	T|0.663;C|0.337	0	0	0	0	0
IRF7	3665	hgsc.bcm.edu	37	11	615103	615103	+	Silent	SNP	G	G	A	rs113083699		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	IRF7-90	NM_004031	exon1	c.C216T	p.I72I	CTTGAAGATGCGC	.	10	9	0	0	G|0.949;A|0.051	1	1	0	0	0
MUC6	4588	bcgsc.ca	37	11	1016835	1016835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	MUC6-23	NM_005961	exon31	c.T5966C	p.F1989S	GTCTGGAAGGATG	.	1957	82	2412	42	.	0	0	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093314	1093314	+	Silent	SNP	A	A	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	MUC2-90	NM_002457	exon30	c.A5133T	p.P1711P	AACCCCAACACCC	.	208	8	111	1	.	0	0	0	0	0
ART5	116969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	3661315	3661315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ART5-91	NM_053017	exon2	c.G344A	p.R115Q	CCCGTCCGCACGG	.	141	8	143	0	.	0	0	0	0	0
NLRP14	338323	broad.mit.edu	37	11	7064833	7064833	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NLRP14-295	NM_176822	exon4	c.A1576C	p.T526P	CATTTGACACAGA	.	71	4	55	0	.	0	0	0	0	0
CST6	1474	hgsc.bcm.edu	37	11	65779590	65779590	+	Silent	SNP	C	C	T	rs1131544		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CST6-523	NM_001323	exon1	c.C75T	p.D25D	ACGCGACGCCCGG	.	5	5	0	0	C|0.921;T|0.079	0	0	0	0	0
USP2	9099	hgsc.bcm.edu	37	11	119234664	119234664	+	Silent	SNP	G	G	C	rs201288742		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	USP2-661	NM_171997	exon1	c.C42G	p.P14P	GGCGGCGGGGGGG	.	21	19	3	0	G|0.991;C|0.009	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	10	10	0	0	C|0.429;T|0.571	4	4	0	0	0
RNFT2	84900	hgsc.bcm.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_001109903	exon4	c.T345C	p.H115H	CCACCATTTCCAC	.	10	5	2	0	T|0.767;C|0.233	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu	37	12	119594447	119594447	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRRM4-2	NM_194286	exon13	c.A1680C	p.R560S	CCGGAGACGGAGC	.	74	17	8	0	.	0	0	0	0	0
SRRM4	84530	hgsc.bcm.edu	37	12	119594453	119594453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRRM4-2	NM_194286	exon13	c.C1686A	p.S562R	ACGGAGCCGGACC	.	59	10	6	0	.	0	0	0	0	0
EP400	57634	bcgsc.ca	37	12	132547090	132547090	+	Silent	SNP	A	A	G	rs7974276	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	EP400-520	NM_015409	exon47	c.A8178G	p.Q2726Q	GCAGCAACAACAG	.	270	11	166	2	A|0.794;G|0.206	0	0	0	0	0
HNRNPA1L2	144983	hgsc.bcm.edu	37	13	53217493	53217493	+	Missense_Mutation	SNP	A	A	G	rs78872760	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HNRNPA1L2-90	NM_001011724	exon7	c.A866G	p.Y289C	GCCCCTATGGCGG	.	4	4	0	0	A|0.826;G|0.174	132	129	3	0	0
ARHGEF7	8874	bcgsc.ca	37	13	111870037	111870037	+	Silent	SNP	T	T	C	rs2296354	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ARHGEF7-232	NM_001113511	exon6	c.T543C	p.D181D	GACCGATAATAGC	.	204	8	215	0	T|0.807;C|0.193	0	0	0	0	0
NDRG2	57447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21488972	21488972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NDRG2-154	NM_201537	exon7	c.G439C	p.A147P	CTCCAGCTCCAAC	.	34	22	36	0	.	2	0	2	0	0
SAMD4A	23034	hgsc.bcm.edu	37	14	55227152	55227152	+	Missense_Mutation	SNP	G	G	T	rs149416017		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SAMD4A-90	NM_015589	exon6	c.G1450T	p.A484S	GAGCTGGCCGTCG	.	4	4	1	0	G|0.987;T|0.013	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369395	65369395	+	Missense_Mutation	SNP	C	C	T	rs2919358	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_001101362	exon1	c.C242T	p.A81V	TGCAGGCCGTGGA	.	11	9	1	0	C|0.452;T|0.548	0	0	0	0	0
PLIN1	5346	hgsc.bcm.edu	37	15	90209135	90209135	+	Silent	SNP	G	G	A	rs8179074	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLIN1-91	NM_001145311	exon9	c.C1248T	p.F416F	GTCCCGGAATTCG	.	9	9	0	0	G|0.976;A|0.024	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	10	10	0	0	G|0.570;T|0.430	0	0	0	0	0
ANKS3	124401	hgsc.bcm.edu	37	16	4748461	4748461	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ANKS3-90	NM_133450	exon14	c.C1691G	p.A564G	TCCCGGGCCAGGG	.	21	5	3	0	.	1	1	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	12	12	0	0	G|0.001;A|0.999	0	0	0	0	0
SPNS3	201305	bcgsc.ca	37	17	4391132	4391132	+	Silent	SNP	C	C	T	rs2291743	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SPNS3-153	NM_182538	exon12	c.C1482T	p.N494N	CAGCAACGACCTG	.	244	8	266	2	C|0.793;T|0.207	2	2	0	0	0
SPNS3	201305	bcgsc.ca	37	17	4391153	4391153	+	Silent	SNP	A	A	G	rs333122	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SPNS3-153	NM_182538	exon12	c.A1503G	p.L501L	AGGCCTACTTTCG	.	228	8	262	4	A|0.784;G|0.216	3	3	0	0	0
RAI1	10743	ucsc.edu	37	17	17697102	17697102	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	RAI1-91	NM_030665	exon3	c.G840A	p.Q280Q	GCAGCAGCAGCAG	.	94	10	56	2	.	0	0	0	0	0
RNF135	84282	hgsc.bcm.edu	37	17	29298390	29298390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	RNF135-227	NM_197939	exon1	c.A299G	p.H100R	CTGCCCACTGCCC	.	9	5	2	0	.	0	0	0	0	0
ARL5C	390790	broad.mit.edu;bcgsc.ca	37	17	37316988	37316988	+	Missense_Mutation	SNP	T	T	C	rs16522	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ARL5C-68	NM_001143968	exon5	c.A347G	p.Q116R	GCATCCTGTAGAG	.	100	6	109	0	A|0.012;C|0.144	0	0	0	0	0
TTLL6	284076	hgsc.bcm.edu	37	17	46846505	46846505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TTLL6-90	NM_001130918	exon15	c.C2522A	p.T841N	CTCAGAGTAACAT	.	78	4	108	0	.	0	0	0	0	0
EVPL	2125	bcgsc.ca	37	17	74014668	74014668	+	Missense_Mutation	SNP	T	T	C	rs2071192	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	EVPL-93	NM_001988	exon12	c.A1298G	p.Q433R	TCACCCTGCAGCA	.	230	8	190	2	T|0.239;G|0.223	0	0	0	0	0
UTS2R	2837	broad.mit.edu	37	17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	UTS2R-153	NM_018949	exon1	c.C866A	p.A289E	CGCTGGCGCCGCG	.	114	7	32	1	.	0	0	0	0	0
ZFR2	23217	hgsc.bcm.edu	37	19	3831404	3831404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZFR2-70	NM_015174	exon5	c.C749G	p.S250W	GGCTTCGAGTCGG	.	19	10	2	0	.	0	0	0	0	0
PLIN5	440503	hgsc.bcm.edu	37	19	4524016	4524016	+	Missense_Mutation	SNP	G	G	A	rs1062223	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLIN5-22	NM_001013706	exon8	c.C916T	p.R306W	GGCCCCGCACGCT	.	8	6	0	0	G|0.892;A|0.108	0	0	0	0	0
ZNF266	10781	bcgsc.ca	37	19	9524185	9524185	+	Silent	SNP	A	A	G	rs2241356	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZNF266-91	NM_001271314	exon11	c.T1416C	p.A472A	CTTAAAAGCTTTG	.	176	6	161	1	A|0.383;G|0.617	1	1	0	0	0
NWD1	284434	broad.mit.edu	37	19	16859997	16859997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NWD1-7	NM_001007525	exon6	c.G544A	p.E182K	GACCGGGAACAGG	.	204	6	182	0	.	0	0	0	0	0
GDF1	2657	hgsc.bcm.edu	37	19	18980172	18980172	+	Missense_Mutation	SNP	G	G	A	rs4808863	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GDF1-226	NM_001492	exon8	c.C353T	p.A118V	GCCGAGGCAGGCT	.	12	11	0	0	G|0.715;A|0.285	0	0	0	0	0
ZNF676	163223	hgsc.bcm.edu	37	19	22363460	22363460	+	Silent	SNP	A	A	G	rs78757874		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZNF676-90	NM_001001411	exon3	c.T1059C	p.T353T	ATGTTTAGTAAGG	.	40	5	20	0	.	0	0	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127439	47127439	+	Missense_Mutation	SNP	A	A	G	rs200213497		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PTGIR-522	NM_000960	exon2	c.T44C	p.V15A	GGCCCCACCGAGC	.	6	5	0	0	.	0	0	0	0	0
PPP1R15A	23645	bcgsc.ca	37	19	49377873	49377873	+	Silent	SNP	G	G	A	rs35023389	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PPP1R15A-226	NM_014330	exon2	c.G1383A	p.L461L	AGCCTTGGGAGAA	.	189	8	222	2	G|0.861;A|0.139	11	11	0	0	0
GYS1	2997	bcgsc.ca	37	19	49485548	49485548	+	Silent	SNP	G	G	A	rs5464	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GYS1-524	NM_002103	exon7	c.C1026T	p.F342F	CTCCAGGAAGACG	.	182	7	230	0	G|0.713;A|0.287	0	0	0	0	0
CGB7	94027	ucsc.edu	37	19	49558216	49558216	+	Missense_Mutation	SNP	C	C	T	rs36106771	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CGB7-90	NM_033142	exon2	c.G65A	p.R22K	ATCTCCCTGGATG	.	28	10	35	2	C|0.674;T|0.326	0	0	0	0	0
ZNF83	55769	bcgsc.ca	37	19	53116856	53116856	+	Missense_Mutation	SNP	T	T	A	rs199873537		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZNF83-91	NM_018300	exon3	c.A962T	p.E321V	CCACACTCATTAC	.	185	10	121	2	.	6	5	1	0	0
ZBTB45	84878	hgsc.bcm.edu	37	19	59028585	59028585	+	Silent	SNP	G	G	A	rs11545185	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZBTB45-90	NM_032792	exon2	c.C456T	p.R152R	GCGCAGGCGGTGA	.	4	4	0	0	G|0.844;A|0.156	0	0	0	0	0
TMEM247	388946	bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	292	30	187	2	G|1.000;|0.000	0	0	0	0	0
BCL11A	53335	broad.mit.edu	37	2	60688968	60688968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	BCL11A-1149	NM_018014	exon4	c.T1079C	p.L360P	GGAGGGAGGGGGG	.	87	9	59	5	.	0	0	0	0	0
COPS7B	64708	broad.mit.edu;bcgsc.ca	37	2	232659056	232659056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	COPS7B-228	NM_022730	exon4	c.A322G	p.M108V	TCAAGAATGAAGG	.	58	4	90	0	.	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26061803	26061803	+	RNA	SNP	C	C	A	rs78281752	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	.	.	.	.	CAGTTTCTTTTGA	.	60	11	23	0	C|0.649;A|0.351	1	1	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	726	23	567	8	.	3	3	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625971	29625971	+	RNA	SNP	C	C	A	rs145033899		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FRG1B-22	.	.	.	.	GGGAACCAGTCTT	.	145	6	102	1	.	0	0	0	0	0
WISP2	8839	hgsc.bcm.edu	37	20	43348735	43348735	+	Silent	SNP	C	C	A	rs2296530	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	WISP2-130	NM_003881	exon2	c.C258A	p.G86G	CGGTGGCCGGGGG	.	9	9	0	0	C|0.615;A|0.385	1	0	1	0	0
MN1	4330	broad.mit.edu	37	22	28194934	28194936	+	In_Frame_Del	DEL	TGC	TGC	-	rs34890218		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	MN1-993	NM_002430	exon1	c.1596_1598del	p.532_533del	TGCTGTTGCTGCT	.	100	7	10	0	.	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TRIOBP-136	NM_001039141	exon7	c.A3899G	p.H1300R	GCACCCACAGCCC	.	4	4	0	0	A|0.354;G|0.646	0	0	0	0	0
FBLN2	2199	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	13612958	13612958	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FBLN2-91	NM_001998	exon2	c.T1103C	p.V368A	CTCTCGTCCCAAC	.	110	8	33	0	.	0	0	0	0	0
HHATL	57467	bcgsc.ca	37	3	42735150	42735150	+	Missense_Mutation	SNP	T	T	C	rs11079	bycluster;byfrequency;by1000genomes	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HHATL-93	NM_020707	exon10	c.A1207G	p.M403V	TTTGCATCCAGAG	.	117	8	111	0	T|0.381;C|0.619	3	3	0	0	0
NBEAL2	23218	broad.mit.edu	37	3	47036675	47036675	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	NBEAL2-69	NM_015175	exon13	c.G1450T	p.A484S	TGCCCTGCCAGCC	.	97	9	23	0	.	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	8	6	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	8	6	1	0	G|0.252;C|0.748	0	0	0	0	0
PPP2R3A	5523	bcgsc.ca	37	3	135722264	135722264	+	Missense_Mutation	SNP	A	A	G	rs17197552	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PPP2R3A-662	NM_002718	exon2	c.A1924G	p.S642G	TGTAGAAGTCCTG	.	125	7	150	0	A|0.779;G|0.221	0	0	0	0	0
SPON2	10417	hgsc.bcm.edu	37	4	1165131	1165131	+	Missense_Mutation	SNP	C	C	T	rs193114328	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SPON2-90	NM_012445	exon3	c.G364A	p.A122T	ACACCGCGTGCAC	.	36	31	0	0	C|0.990;T|0.010	0	0	0	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388664	1388664	+	Missense_Mutation	SNP	T	T	C	rs199774688	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CRIPAK-90	NM_175918	exon1	c.T365C	p.M122T	TGCCGATGCGGAG	.	135	8	26	0	T|0.995;C|0.005	2	2	0	0	0
HTT	3064	bcgsc.ca	37	4	3215835	3215835	+	Missense_Mutation	SNP	T	T	C	rs362331	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HTT-281	NM_002111	exon50	c.T6925C	p.Y2309H	CTCATCTACTGTG	.	82	5	109	1	C|0.453;N|0.000	0	0	0	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492434	48492434	+	Missense_Mutation	SNP	G	G	C	rs10008444		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZAR1-90	NM_175619	exon1	c.G126C	p.Q42H	GCAGCAGCGCGGC	.	4	4	0	0	G|0.025;C|0.975	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	912	41	812	8	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537090	88537090	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	DSPP-90	NM_014208	exon5	c.T3276C	p.N1092N	CAGCAATAGCAGT	.	377	51	648	38	.	0	0	0	0	0
ADH6	130	broad.mit.edu	37	4	100137315	100137316	+	Splice_Site	DEL	TA	TA	-	rs56278423	bycluster	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ADH6-228	.	.	.	.	TTTTTTTACCTTT	.	9	4	4	0	T|1.000	0	0	0	0	0
COL25A1	84570	bcgsc.ca	37	4	109863370	109863370	+	Missense_Mutation	SNP	C	C	T	rs17531474	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	COL25A1-92	NM_001256074	exon7	c.G547A	p.V183I	CCTTGACGGTGAG	.	345	14	396	3	C|0.940;T|0.060	0	0	0	0	0
LRIT3	345193	broad.mit.edu	37	4	110772859	110772859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	LRIT3-90	NM_198506	exon2	c.C316A	p.Q106K	CTGAAGCAACTGC	.	68	7	64	0	.	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRD5A1-90	NM_001047	exon1	c.C90G	p.R30R	CGCGCGCAATCGT	.	6	6	0	0	C|0.454;G|0.546	0	0	0	0	0
GABRG2	2566	hgsc.bcm.edu	37	5	161529571	161529571	+	Missense_Mutation	SNP	A	A	G	rs211035	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GABRG2-95	NM_198903	exon6	c.A643G	p.I215V	CGTTCTATTGCCC	.	6	6	0	0	A|0.193;G|0.807	0	0	0	0	0
HLA-B	3106	bcgsc.ca	37	6	31324516	31324516	+	Missense_Mutation	SNP	C	C	A	rs1131215	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HLA-B-90	NM_005514	exon2	c.G292T	p.D98Y	CTCGGTCAGTCTG	.	89	37	147	4	C|0.417;A|0.583	6	6	0	0	0
HLA-B	3106	bcgsc.ca	37	6	31324586	31324586	+	Silent	SNP	C	C	T	rs151341145	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HLA-B-90	NM_005514	exon2	c.G222A	p.P74P	TATCCACGGCGCC	.	89	28	170	3	.	67	67	0	0	0
TNXB	7148	hgsc.bcm.edu	37	6	32063513	32063514	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	AC	AC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TNXB-90	NM_019105	exon3	c.2116_2117del	p.706_706del	CCCTCTACACACA	.	403	11	247	2	.	0	0	0	0	0
HLA-DRB1	3123	bcgsc.ca	37	6	32557436	32557436	+	Missense_Mutation	SNP	C	C	G	rs201614260	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HLA-DRB1-1	NM_002124	exon1	c.G84C	p.L28F	CCCAGACAAAGCC	.	143	18	222	3	C|0.936;G|0.064	0	0	0	0	0
TRERF1	55809	broad.mit.edu	37	6	42196330	42196330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	TRERF1-230	NM_033502	exon18	c.C3356A	p.A1119D	TTCTGAGCCTTTT	.	24	3	25	0	.	1	1	0	0	0
FAM46A	55603	broad.mit.edu	37	6	82461728	82461742	+	In_Frame_Del	DEL	CCGCCGAAGTCGCCG	CCGCCGAAGTCGCCG	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FAM46A-90	NM_017633	exon2	c.117_131del	p.39_44del	CCGCCACCGCCGA	.	80	10	34	0	.	0	0	0	0	0
SYTL3	94120	broad.mit.edu	37	6	159086557	159086557	+	Missense_Mutation	SNP	C	C	T	rs150257129	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SYTL3-90	NM_001242384	exon6	c.C241T	p.R81W	GTGTGCCGGGGCT	.	92	4	39	1	C|0.998;T|0.002	0	0	0	0	0
EGFR	1956	bcgsc.ca	37	7	55249063	55249063	+	Silent	SNP	G	G	A	rs1050171	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	EGFR-44910	NM_005228	exon20	c.G2361A	p.Q787Q	CGTGCAGCTCATC	.	263	8	250	1	G|0.497;A|0.503	0	0	0	0	0
GAL3ST4	79690	bcgsc.ca	37	7	99758136	99758136	+	Silent	SNP	T	T	G	rs3800951	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GAL3ST4-47	NM_024637	exon4	c.A876C	p.A292A	CAGCCATGCCAGA	.	132	6	161	1	T|0.464;G|0.536	0	0	0	0	0
RELN	5649	broad.mit.edu	37	7	103206814	103206814	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	RELN-574	NM_173054	exon33	c.T4793C	p.M1598T	TCATTCATTCCTA	.	66	3	47	0	.	0	0	0	0	0
SLC37A3	84255	bcgsc.ca	37	7	140080087	140080087	+	Missense_Mutation	SNP	C	C	G	rs62490396	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SLC37A3-93	NM_207113	exon3	c.G193C	p.V65L	CCTCCACAGGCAG	.	96	5	110	0	C|0.599;G|0.401	0	0	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	8	7	0	0	G|0.907;A|0.093	0	0	0	0	0
WWP1	11059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87437479	87437479	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	WWP1-659	NM_007013	exon10	c.T1089G	p.G363G	TCATGGTAGAACC	.	56	19	32	0	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	10	10	0	0	.	0	0	0	0	0
THEM6	51337	hgsc.bcm.edu	37	8	143809193	143809193	+	Silent	SNP	C	C	T	rs2257840		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_016647	exon1	c.C429T	p.G143G	GGACGGCTTCGTG	.	10	10	0	0	C|0.534;T|0.466	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144990396	144990396	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLEC-141	NM_201380	exon32	c.C14004A	p.Y4668X	CGAGGCGTAGCGG	.	63	4	17	0	.	5	5	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998514	144998514	+	Silent	SNP	C	C	T	rs75586449	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLEC-141	NM_201380	exon31	c.G5994A	p.A1998A	GTTCTCCGCCTCC	.	10	5	0	0	C|0.961;T|0.039	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	9	4	0	0	C|0.707;T|0.293	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	13	13	0	0	G|0.572;C|0.428	0	0	0	0	0
AQP7	364	ucsc.edu	37	9	33385287	33385287	+	Missense_Mutation	SNP	T	T	C	rs74557595		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	AQP7-90	NM_001170	exon8	c.A745G	p.N249D	CCCCATTGCTGCA	.	31	8	27	2	.	0	0	0	0	0
CA9	768	hgsc.bcm.edu	37	9	35675852	35675852	+	Silent	SNP	C	C	G	rs2301370	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	CA9-95	NM_001216	exon3	c.C528G	p.A176A	CCCGGCCCTGCGC	.	27	16	3	0	C|0.941;G|0.059	0	0	0	0	0
RABL6	55684	bcgsc.ca	37	9	139732331	139732331	+	Missense_Mutation	SNP	G	G	C	rs2811741	byfrequency	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_001173988	exon10	c.G1147C	p.E383Q	GCCGCAGAGGGCC	.	490	16	458	1	G|0.806;C|0.194	1	1	0	0	0
SRPX	8406	broad.mit.edu	37	X	38079976	38079978	+	In_Frame_Del	DEL	GCA	GCA	-	rs35523939	alternate_allele	TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	SRPX-130	NM_001170751	exon1	c.68_70del	p.23_24del	GGACGCGCAGCAG	.	43	0	5	0	-|1.000;|0.000	0	0	0	0	0
HDAC6	10013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	48676475	48676475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	HDAC6-230	NM_006044	exon21	c.C1953A	p.H651Q	TGTCCACCACGGT	.	492	204	321	0	.	1	1	0	0	0
FAM155B	27112	broad.mit.edu	37	X	68725179	68725181	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FAM155B-131	NM_015686	exon1	c.54_56del	p.18_19del	GACTATCTGCTGC	.	84	8	10	0	.	0	0	0	0	0
ZMYM3	9203	ucsc.edu;bcgsc.ca	37	X	70467669	70467669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	ZMYM3-131	NM_005096	exon12	c.G2063A	p.R688H	ACTCCGCGCTGGC	.	441	181	321	2	.	0	0	0	0	0
GPRASP2	114928	broad.mit.edu	37	X	101971018	101971018	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	GPRASP2-131	NM_138437	exon4	c.T1221C	p.C407C	AATCTGTGAATCT	.	173	13	77	2	.	0	0	0	0	0
G6PD	2539	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153761190	153761190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	G6PD-135	NM_000402	exon9	c.G1108A	p.V370I	GGACGACGGCTGC	.	473	163	271	1	.	11	11	0	0	0
VWF	7450	broad.mit.edu	37	12	6132943	6132944	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	VWF-163	NM_000552	exon25	c.3233_3234insG	p.E1078fs	TATGGCTCGGGGT	.	616	9	364	0	.	0	0	0	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305775	39305776	+	In_Frame_Ins	INS	-	-	GGCAGCAGCTGGGGC	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	KRTAP4-5-90	NM_033188	exon1	c.245_246insGCCCCAGCTGCTGCC	p.Q82delinsRPSCCQ	GTGGTCTGGCAGC	.	97	51	29	0	.	0	0	0	0	0
FADS6	283985	hgsc.bcm.edu	37	17	72889676	72889677	+	In_Frame_Ins	INS	-	-	GGCTCCGTAGGTTCCATC	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	FADS6-22	NM_178128	exon1	c.18_19insGATGGAACCTACGGAGCC	p.P6delinsPMEPTEP	TTCCATGGGCTCC	.	114	0	37	0	.	0	0	0	0	0
DSTN	11034	broad.mit.edu	37	20	17581488	17581489	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	DSTN-154	NM_006870	exon2	c.109_110insT	p.I37fs	GCTGTCATTTTTT	.	203	22	120	3	.	0	0	0	0	0
SPATA31C1	441452	hgsc.bcm.edu	37	9	90534192	90534193	+	In_Frame_Ins	INS	-	-	TCTTGTCTCCCAGCGTCA	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	.	NM_001145124	exon2	c.212_213insTCTTGTCTCCCAGCGTCA	p.H71delinsHLVSQRH	AGCGTCATCTTGT	.	358	0	414	0	.	0	0	0	0	0
VARS	7407	hgsc.bcm.edu	37	6	31762843	31762844	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-OR-A5L9-01A-11D-A29I-10	TCGA-OR-A5L9-10B-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	f6161f8d-580d-41fc-baa3-0dee1add1df0	388e61b1-2a1f-4cc8-b1c9-d1f0709621ec	.	VARS-93	NM_006295	exon2	c.C151A	p.P51S	GAAAGGGAGTCCT	.	6	0	1	0	G|0.721;T|0.279	0	0	0	0	0