Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AGMAT	79814	hgsc.bcm.edu	37	1	15911349	15911349	+	Silent	SNP	G	G	A	rs3737705	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	AGMAT-91	NM_024758	exon1	c.C114T	p.D38D	GGGCGCGTCGGAA	.	5	5	0	0	G|0.647;A|0.353	1	0	1	0	0
TRIM63	84676	hgsc.bcm.edu	37	1	26386772	26386772	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRIM63-226	NM_032588	exon4	c.C582A	p.S194S	TCGACGGGAATCC	.	45	4	62	0	.	0	0	0	0	0
PTGER3	5733	broad.mit.edu	37	1	71512493	71512493	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PTGER3-660	NM_001126044	exon1	c.G768A	p.L256L	GGACACCAGGGCC	.	114	4	139	0	.	0	0	0	0	0
HRNR	388697	broad.mit.edu;bcgsc.ca	37	1	152188140	152188140	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	HRNR-93	NM_001009931	exon3	c.G5965A	p.G1989S	CTAAGCCAGAAGA	.	3928	167	2748	0	.	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152280081	152280081	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FLG-106	NM_002016	exon3	c.C7281A	p.A2427A	TCCATGGGCGGAC	.	481	116	309	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228526051	228526051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OBSCN-403	NM_001271223	exon79	c.G19933A	p.D6645N	TCTGAAGACGAAT	.	55	9	31	0	.	2	2	0	0	0
PCNXL2	80003	bcgsc.ca	37	1	233225848	233225848	+	Silent	SNP	T	T	C	rs12059884	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCNXL2-91	NM_014801	exon23	c.A4035G	p.T1345T	ATATGATGTGATG	.	147	6	120	0	T|0.854;C|0.146	0	0	0	0	0
RYR2	6262	bcgsc.ca	37	1	237958589	237958589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RYR2-158	NM_001035	exon96	c.G13914T	p.Q4638H	TTTTAGGTCATTT	.	127	6	142	0	.	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	194	4	124	0	.	2	2	0	0	0
NPFFR1	64106	hgsc.bcm.edu	37	10	72014863	72014863	+	Silent	SNP	G	G	A	rs60225321	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	NPFFR1-22	NM_022146	exon4	c.C1143T	p.S381S	CAGCCCGGAGTCG	.	18	11	0	0	G|0.929;A|0.071	0	0	0	0	0
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	84745227	84745227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	NRG3-522	NM_001010848	exon9	c.G1957A	p.A653T	GAACTGGCCAGCG	.	96	43	71	0	.	2	2	0	0	0
PIK3AP1	118788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98386618	98386618	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PIK3AP1-519	NM_152309	exon10	c.C1516G	p.L506V	GACCAAGATGGCA	.	187	87	135	0	.	0	0	0	0	0
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	113924340	113924340	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GPAM-92	NM_001244949	exon13	c.C1250T	p.P417L	GACACCGGTTTCT	.	100	48	53	0	.	0	0	0	0	0
PNLIP	5406	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118318731	118318731	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PNLIP-92	NM_000936	exon10	c.T996G	p.P332P	ATATCCTGGGAAA	.	134	62	96	0	.	0	0	0	0	0
ENO4	387712	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	10	118633606	118633606	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ENO4-69	NM_001242699	exon10	c.T1235C	p.V412A	ATGAAGTGATCAT	.	125	51	109	0	.	0	0	0	0	0
C11orf35	256329	hgsc.bcm.edu	37	11	556372	556372	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C11orf35-69	NM_173573	exon10	c.G1077A	p.P359P	GCCTGTCGGGCTG	.	8	8	0	0	.	1	0	1	0	0
CDHR5	53841	hgsc.bcm.edu	37	11	617593	617593	+	Missense_Mutation	SNP	G	G	C	rs137998609	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CDHR5-90	NM_021924	exon15	c.C2296G	p.R766G	CAGCTCGGGCCGC	.	20	19	0	0	G|0.990;C|0.010	37	0	37	0	0
MUC5B	727897	ucsc.edu;bcgsc.ca	37	11	1253942	1253942	+	Silent	SNP	T	T	C	rs908229	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_002458	exon17	c.T2007C	p.Y669Y	CTCCTATGTGCAC	.	123	16	46	0	T|0.463;C|0.537	0	0	0	0	0
MUC5B	727897	bcgsc.ca	37	11	1253969	1253969	+	Silent	SNP	A	A	G	rs72846370		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_002458	exon17	c.A2034G	p.V678V	GGGCGTACAGCTC	.	116	12	35	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253980	1253980	+	Missense_Mutation	SNP	A	A	G	rs202127660		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_002458	exon17	c.A2045G	p.D682G	TCAGCGACTGGAG	.	102	10	25	0	.	0	0	0	0	0
MUC5B	727897	broad.mit.edu	37	11	1267340	1267340	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_002458	exon31	c.C9230G	p.T3077S	GGACCACCGGGAC	.	187	5	335	0	.	0	0	0	0	0
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1471882	1471882	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	BRSK2-333	NM_001256630	exon14	c.G1491A	p.T497T	CCACACGCCAAAG	.	80	67	10	0	.	0	0	0	0	0
PLCB3	5331	broad.mit.edu	37	11	64034712	64034712	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PLCB3-228	NM_000932	exon30	c.T3470G	p.V1157G	AGCAGGTCCTGCA	.	140	20	161	17	.	35	35	0	0	0
GSTP1	2950	bcgsc.ca	37	11	67353579	67353579	+	Missense_Mutation	SNP	C	C	T	rs1138272	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GSTP1-91	NM_000852	exon6	c.C341T	p.A114V	AGGAGGCGGGCAA	.	90	6	134	2	C|0.954;T|0.046	1	1	0	0	0
TENM4	26011	broad.mit.edu	37	11	78498081	78498081	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001098816	exon16	c.A2227C	p.T743P	GGCAGGTGCCCCC	.	90	12	65	9	.	0	0	0	0	0
C11orf92	399948	bcgsc.ca	37	11	111167792	111167792	+	RNA	SNP	T	T	G	rs10891245	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C11orf92-226	.	.	.	.	TGTGGCTTCAGCT	.	52	4	67	0	T|0.700;G|0.300	0	0	0	0	0
SLCO1B7	338821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	21196449	21196449	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001009562	exon6	c.T768C	p.D256D	TAATGATAAAAGG	.	27	11	20	0	.	0	0	0	0	0
SLC2A13	114134	hgsc.bcm.edu	37	12	40499118	40499118	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC2A13-515	NM_052885	exon1	c.C493T	p.L165L	CAGCCAGCACCGC	.	93	50	4	0	.	2	0	2	0	0
TMEM19	55266	hgsc.bcm.edu;broad.mit.edu	37	12	72091182	72091182	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TMEM19-90	NM_018279	exon4	c.G505T	p.A169S	TACTCCGCTTCCT	.	72	4	58	0	.	5	5	0	0	0
GALNT4	8693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	89916603	89916603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_003774	exon1	c.G1724A	p.S575N	TCAAAACTCCAAA	.	104	25	80	2	.	0	0	0	0	0
C12orf65	91574	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123738436	123738436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C12orf65-90	NM_001194995	exon2	c.G215T	p.G72V	CAGGGGGCCAGGC	.	139	53	140	1	.	29	15	14	0	0
PCDH20	64881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	61986775	61986775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCDH20-581	NM_022843	exon2	c.A1457G	p.E486G	AAATATTCATTAT	.	177	91	154	0	.	0	0	0	0	0
KLF5	688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	73636282	73636282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	KLF5-155	NM_001730	exon2	c.C545T	p.P182L	CGGCCCCGACCCA	.	77	38	61	0	.	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	89	11	21	0	.	16	16	0	0	0
LRRC16B	90668	broad.mit.edu	37	14	24527404	24527404	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	LRRC16B-139	NM_138360	exon17	c.G1363C	p.D455H	CTCAGTGACCTGC	.	200	5	195	0	.	0	0	0	0	0
INSM2	84684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	36004341	36004341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	INSM2-226	NM_032594	exon1	c.G883C	p.E295Q	TGCCCTGAGTGCG	.	92	25	23	0	.	0	0	0	0	0
SLC10A1	6554	broad.mit.edu	37	14	70246042	70246042	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC10A1-91	NM_003049	exon3	c.C603T	p.A201A	TGTGACGGCCACA	.	89	5	92	1	.	0	0	0	0	0
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74191989	74191989	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_194278	exon9	c.2560delC	p.L854fs	GCACCAGGAAGAA	.	70	57	111	0	.	0	0	0	0	0
SAMD15	161394	bcgsc.ca	37	14	77845121	77845121	+	Missense_Mutation	SNP	A	A	G	rs2193595	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SAMD15-90	NM_001010860	exon1	c.A1360G	p.K454E	AGTGACAAATTTA	.	48	4	52	0	A|0.451;G|0.549	0	0	0	0	0
CHGA	1113	bcgsc.ca	37	14	93401178	93401178	+	Silent	SNP	A	A	G	rs941581	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CHGA-516	NM_001275	exon8	c.A1323G	p.E441E	CATTGAAGCAGAG	.	232	9	169	0	A|0.243;G|0.757	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	5	5	0	0	G|0.327;T|0.673	67	29	38	0	0
APBA2	321	broad.mit.edu;bcgsc.ca	37	15	29393975	29393975	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	APBA2-90	NM_005503	exon9	c.C1512T	p.F504F	TGTGTTCGAGTCG	.	140	6	146	1	.	0	0	0	0	0
MFAP1	4236	broad.mit.edu	37	15	44116740	44116740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MFAP1-226	NM_005926	exon1	c.C28A	p.Q10K	GCGGTTGCTTCAT	.	204	6	183	0	.	5	5	0	0	0
SPG11	80208	broad.mit.edu	37	15	44858189	44858189	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SPG11-95	NM_025137	exon38	c.G6862T	p.A2288S	GCTGGGCCTGTCG	.	55	4	80	1	.	27	27	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058090	79058090	+	Missense_Mutation	SNP	A	A	G	rs2929158	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ADAMTS7-226	NM_014272	exon19	c.T4163C	p.V1388A	TCAGGGACTCTGT	.	97	6	14	0	A|0.898;G|0.102	32	30	2	0	0
PDE8A	5151	hgsc.bcm.edu;bcgsc.ca	37	15	85656649	85656650	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TC	TC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PDE8A-94	NM_002605	exon13	c.1156_1157del	p.386_386del	ATACATTCCATGA	.	156	36	113	0	.	0	0	0	0	0
PTX4	390667	hgsc.bcm.edu	37	16	1537601	1537601	+	Missense_Mutation	SNP	A	A	G	rs2667674	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PTX4-90	NM_001013658	exon2	c.T497C	p.L166P	CCCTCCAGAGCAG	.	29	11	0	0	A|0.928;G|0.072	0	0	0	0	0
EME2	197342	hgsc.bcm.edu	37	16	1823444	1823444	+	Silent	SNP	C	C	G	rs761065		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	EME2-229	NM_001257370	exon1	c.C216G	p.V72V	GCAGGTCCTGAAG	.	9	5	0	0	C|0.615;G|0.385	0	0	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2156447	2156447	+	Silent	SNP	G	G	A	rs2003782	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PKD1-91	NM_000296	exon18	c.C7441T	p.L2481L	CGCCCAGTGGGAA	.	21	11	0	0	G|0.793;A|0.207	21	18	3	0	0
FLYWCH1	84256	hgsc.bcm.edu	37	16	2980747	2980747	+	Missense_Mutation	SNP	C	C	T	rs201356969		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FLYWCH1-22	NM_020912	exon4	c.C659T	p.P220L	TGGGCCCGTGGCA	.	42	20	4	0	.	7	3	4	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MEFV-228	NM_000243	exon2	c.C495A	p.A165A	CTCCGAGGCCTTC	.	16	13	0	0	G|0.570;T|0.430	0	0	0	0	0
ATXN2L	11273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28844676	28844676	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ATXN2L-92	NM_145714	exon14	c.1955+1G>T	.	TGCTGAGTGAGTG	.	89	43	79	0	.	9	0	9	0	0
SEZ6L2	26470	hgsc.bcm.edu	37	16	29908433	29908433	+	Missense_Mutation	SNP	C	C	G	rs11649499	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SEZ6L2-92	NM_001243332	exon3	c.G221C	p.R74P	GGGTCCCGATCAG	.	8	8	0	0	C|0.218;G|0.782	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	7	7	0	0	G|0.001;A|0.999	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88520086	88520086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZFPM1-90	NM_153813	exon1	c.C40T	p.R14C	ATCAAGCGTGAGT	.	8	4	0	0	.	0	0	0	0	0
C17orf97	400566	hgsc.bcm.edu	37	17	260182	260182	+	Silent	SNP	T	T	C	rs7502594		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C17orf97-91	NM_001013672	exon1	c.T49C	p.L17L	CGCCGATTAGTCG	.	10	7	0	0	T|0.657;C|0.343	0	0	0	0	0
SMYD4	114826	bcgsc.ca	37	17	1684605	1684605	+	Missense_Mutation	SNP	G	G	T	rs58337165	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SMYD4-230	NM_052928	exon11	c.C2390A	p.P797H	GGGGTGGGTGGTA	.	122	6	155	0	G|0.880;T|0.120	0	0	0	0	0
HIC1	3090	hgsc.bcm.edu	37	17	1960974	1960974	+	Silent	SNP	C	C	T	rs77393586		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	HIC1-135	NM_001098202	exon2	c.C1047T	p.R349R	GGAGCGCGGCTCC	.	10	5	0	0	C|0.839;T|0.161	0	0	0	0	0
OR1D5	8386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2966182	2966182	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_014566	exon1	c.C720A	p.T240T	GGCACAGGTAGAG	.	684	268	615	0	.	0	0	0	0	0
GSG2	83903	broad.mit.edu	37	17	3629267	3629267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GSG2-297	NM_031965	exon1	c.G2038T	p.G680W	AGCTGTGGGTTGC	.	82	3	55	0	.	1	1	0	0	0
ATPAF2	91647	broad.mit.edu	37	17	17942265	17942265	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ATPAF2-90	NM_145691	exon1	c.T63G	p.G21G	GGGGCCACCCGCC	.	103	29	42	12	.	2	1	1	0	0
KRTAP4-7	100132476	bcgsc.ca	37	17	39240737	39240737	+	Missense_Mutation	SNP	C	C	G	rs201389180		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_033061	exon1	c.C279G	p.S93R	GTCCAGCTGCTGC	.	122	37	31	0	.	0	0	0	0	0
KRTAP4-7	100132476	bcgsc.ca	37	17	39240745	39240745	+	Missense_Mutation	SNP	A	A	G	rs199744933		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_033061	exon1	c.A287G	p.K96R	GCTGCAAGCCCCA	.	119	41	28	1	.	0	0	0	0	0
NPTX1	4884	hgsc.bcm.edu	37	17	78449948	78449948	+	Missense_Mutation	SNP	C	C	T	rs144443274		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	NPTX1-90	NM_002522	exon1	c.G299A	p.G100D	GCCTCGCCGGCTC	.	6	4	0	0	C|0.910;T|0.090	1	0	1	0	0
POLI	11201	broad.mit.edu	37	18	51795958	51795960	+	In_Frame_Del	DEL	CGA	CGA	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	POLI-229	NM_007195	exon1	c.42_44del	p.14_15del	CGGCGGCGACGAC	.	92	34	8	0	.	0	0	0	0	0
R3HDM4	91300	bcgsc.ca	37	19	899444	899444	+	Silent	SNP	C	C	T	rs2965284	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_138774	exon7	c.G699A	p.S233S	ACTGGCCGAGATG	.	145	6	102	0	C|0.877;T|0.123	3	3	0	0	0
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8595175	8595175	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO1F-93	NM_012335	exon21	c.G2233T	p.G745W	CCAGCCCCAGGTA	.	167	38	144	0	.	0	0	0	0	0
RLN3	117579	bcgsc.ca	37	19	14141666	14141666	+	Missense_Mutation	SNP	G	G	T	rs78161395	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RLN3-90	NM_080864	exon2	c.G335T	p.G112V	CCCCTGGGGTTCT	.	104	5	80	0	G|0.865;T|0.135	0	0	0	0	0
OR7A10	390892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14951843	14951843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OR7A10-68	NM_001005190	exon1	c.C847A	p.P283T	GCATGGGGGTGAC	.	140	66	92	0	.	0	0	0	0	0
SLC27A1	376497	hgsc.bcm.edu	37	19	17597661	17597661	+	Missense_Mutation	SNP	A	A	T	rs61743602	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC27A1-226	NM_198580	exon2	c.A457T	p.M153L	GCGGGCATGGAGG	.	16	10	0	0	A|0.993;T|0.007	1	0	1	0	0
ZNF254	9534	hgsc.bcm.edu;mdanderson.org	37	19	24310744	24310744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZNF254-90	NM_203282	exon4	c.G1942A	p.D648N	ACCACAGATAAGA	.	16	7	8	0	.	3	2	1	0	0
LRP3	4037	hgsc.bcm.edu	37	19	33698018	33698018	+	Missense_Mutation	SNP	C	C	T	rs11539586		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	LRP3-92	NM_002333	exon7	c.C1850T	p.A617V	CGCGGGCGCCCCG	.	14	9	0	0	T|0.000;G|0.967	53	27	25	0	1
SLC7A10	56301	broad.mit.edu	37	19	33699842	33699842	+	Silent	SNP	T	T	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC7A10-91	NM_019849	exon11	c.A1527C	p.P509P	GGAGGGTGGGCAG	.	58	13	40	7	.	0	0	0	0	0
FFAR1	2864	broad.mit.edu;mdanderson.org	37	19	35843174	35843174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FFAR1-90	NM_005303	exon1	c.C720A	p.Y240X	ACCCTACAACGCC	.	40	11	34	0	.	0	0	0	0	0
CATSPERG	57828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38845375	38845375	+	Silent	SNP	C	C	T	rs114967522		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CATSPERG-92	NM_021185	exon9	c.C1023T	p.S341S	GGCCAGCGAGTGC	.	182	82	119	0	C|0.999;T|0.001	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	9	9	0	0	G|0.349;A|0.651	0	0	0	0	0
ZNF234	10780	bcgsc.ca	37	19	44660559	44660559	+	Missense_Mutation	SNP	G	G	T	rs151243299	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_006630	exon6	c.G390T	p.L130F	TGATTTGTCCTGC	.	209	7	169	0	G|0.993;T|0.007	0	0	0	0	0
GLTSCR2	29997	hgsc.bcm.edu	37	19	48258619	48258619	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GLTSCR2-514	NM_015710	exon9	c.C1068T	p.A356A	GCAGGCCGCGTTG	.	13	7	0	0	.	299	158	141	0	0
SULT2B1	6820	broad.mit.edu	37	19	49100007	49100007	+	Silent	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SULT2B1-91	NM_177973	exon6	c.C657A	p.G219G	ACAGGGCTCCGTG	.	64	5	28	0	.	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RASIP1-228	NM_017805	exon5	c.C1801T	p.R601C	CCAGGCGGCCCAG	.	5	5	0	0	G|0.738;A|0.262	15	0	15	0	0
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49699903	49699903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRPM4-91	NM_017636	exon17	c.A2417G	p.Q806R	ATTTCCAGCCGGC	.	55	26	24	0	.	2	2	0	0	0
SLC6A16	28968	broad.mit.edu	37	19	49812163	49812163	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SLC6A16-94	NM_014037	exon7	c.C1199T	p.A400V	ACTGTCGCCCAGA	.	148	5	112	0	.	0	0	0	0	0
TSKS	60385	hgsc.bcm.edu	37	19	50249883	50249883	+	Missense_Mutation	SNP	G	G	A	rs142807989	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TSKS-154	NM_021733	exon6	c.C836T	p.S279F	CCCTGGGACGTGG	.	22	13	0	0	G|0.999;A|0.001	0	0	0	0	0
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51172454	51172454	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SHANK1-153	NM_016148	exon22	c.C2763A	p.P921P	TGGCGGGGGAATG	.	40	18	26	0	.	0	0	0	0	0
DPRX	503834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54140161	54140161	+	Silent	SNP	C	C	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DPRX-90	NM_001012728	exon3	c.C495G	p.P165P	CTACCCCATTTTG	.	166	71	130	0	.	0	0	0	0	0
TMC4	147798	bcgsc.ca	37	19	54676763	54676763	+	Missense_Mutation	SNP	C	C	T	rs641738	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TMC4-91	NM_001145303	exon1	c.G50A	p.G17E	AGCCACCCCCTAG	.	64	5	59	0	C|0.615;T|0.385	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	12	12	0	0	.	0	0	0	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	189	1	139	0	.	5	3	2	0	0
ZNF606	80095	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58500063	58500063	+	Silent	SNP	G	G	A	rs182994172	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZNF606-92	NM_025027	exon5	c.C204T	p.A68A	GTCCACGGCCACG	.	90	43	67	1	G|0.999;T|0.001	0	0	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CMPK2-68	NM_001256478	exon1	c.T459C	p.C153C	CTCCTGACAGGCG	.	10	10	0	0	A|0.003;G|0.997	1	0	1	0	0
TMEM247	388946	ucsc.edu;bcgsc.ca	37	2	46707808	46707808	+	Missense_Mutation	SNP	C	C	G	rs74318890		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001145051	exon2	c.C382G	p.Q128E	CAGCGGCAGCGGC	.	389	65	115	1	G|1.000;|0.000	0	0	0	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188562	70188562	+	Missense_Mutation	SNP	C	C	T	rs148290351	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ASPRV1-69	NM_152792	exon1	c.G259A	p.G87R	CGCTCCCGGCCAT	.	200	5	125	0	C|0.999;T|0.001	1	1	0	0	0
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84771405	84771405	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DNAH6-69	NM_001370	exon5	c.C711T	p.S237S	TATTAGCCAAAGG	.	146	58	116	0	.	0	0	0	0	0
XIRP2	129446	broad.mit.edu	37	2	168108439	168108439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	XIRP2-104	NM_152381	exon9	c.G10537A	p.E3513K	CAAGAGGAATCTG	.	26	3	16	0	.	0	0	0	0	0
KCNE4	23704	broad.mit.edu;bcgsc.ca	37	2	223917881	223917881	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	KCNE4-91	NM_080671	exon2	c.C486T	p.P162P	GGCGCCCGCGCTG	.	110	36	47	2	.	3	3	0	0	0
WDFY1	57590	hgsc.bcm.edu	37	2	224809876	224809876	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	WDFY1-226	NM_020830	exon1	c.C126A	p.A42A	CTCGCTGGCCGTG	.	71	40	3	0	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628299	29628299	+	RNA	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FRG1B-22	.	.	.	.	GCAAAAAGTAAAA	.	396	23	412	11	.	79	79	0	0	0
IFT52	51098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42233641	42233641	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	IFT52-92	NM_016004	exon6	c.414-1G>T	.	CTTCAAGGGAAAT	.	69	31	48	0	.	0	0	0	0	0
SPATA25	128497	bcgsc.ca	37	20	44515559	44515559	+	Missense_Mutation	SNP	G	G	A	rs3827040	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_080608	exon2	c.C281T	p.P94L	ACATGCGGGAATT	.	111	6	77	0	G|0.917;A|0.083	0	0	0	0	0
SYCP2	10388	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	58450354	58450354	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SYCP2-525	NM_014258	exon33	c.C3321A	p.G1107G	TGGACTGCCAGAT	.	69	6	52	0	.	0	0	0	0	0
RGS19	10287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	62705725	62705725	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RGS19-227	NM_005873	exon5	c.G234A	p.T78T	ACTTGGCGTGGCA	.	131	64	26	0	.	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36041978	36041978	+	Silent	SNP	A	A	G	rs7280973		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CLIC6-91	NM_053277	exon1	c.A291G	p.Q97Q	GCCCCAAGGAGGG	.	4	4	0	0	A|0.001;G|0.999	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042579	36042579	+	Missense_Mutation	SNP	C	C	G	rs13049028	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CLIC6-91	NM_053277	exon1	c.C892G	p.Q298E	CCGCAGCAATCGG	.	13	13	0	0	C|0.802;G|0.198	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042584	36042584	+	Silent	SNP	G	G	A	rs13049239	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CLIC6-91	NM_053277	exon1	c.G897A	p.S299S	GCAATCGGGGGAC	.	13	13	0	0	G|0.803;A|0.197	0	0	0	0	0
U2AF1	7307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44524486	44524486	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	U2AF1-90	NM_001025203	exon2	c.T71C	p.I24T	GCTCCAATTTTGA	.	125	44	137	0	.	75	56	19	0	0
KRTAP10-7	386675	broad.mit.edu	37	21	46020656	46020670	+	Splice_Site	DEL	CTGCTGCGCCCCCAG	CTGCTGCGCCCCCAG	-	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	.	.	.	.	GCCCCCCTGCTGC	.	84	13	24	0	.	0	0	0	0	0
COL6A2	1292	hgsc.bcm.edu	37	21	47552201	47552201	+	Missense_Mutation	SNP	C	C	T	rs117725825	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	COL6A2-515	NM_001849	exon28	c.C2795T	p.P932L	GCAGCCCGCGTGG	.	82	58	6	0	C|0.998;T|0.002	340	139	201	0	0
MN1	4330	hgsc.bcm.edu	37	22	28194895	28194900	+	In_Frame_Del	DEL	TGCTGT	TGCTGT	-	rs75719175	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	TGCTGT	TGCTGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MN1-993	NM_002430	exon1	c.1632_1637del	p.544_546del	TGCTGCTGCTGTT	.	33	26	8	0	.	0	0	0	0	0
TTC28	23331	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	28503713	28503713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001145418	exon7	c.T2120C	p.L707P	TTATTCAGAGACT	.	69	59	89	1	.	0	0	0	0	0
RHBDD3	25807	bcgsc.ca	37	22	29656389	29656389	+	Silent	SNP	G	G	T	rs2231398	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	RHBDD3-91	NM_012265	exon6	c.C909A	p.A303A	AAGCGAGGCCTGG	.	78	5	88	1	G|0.749;T|0.251	22	22	0	0	0
SEC14L4	284904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30887672	30887672	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SEC14L4-91	NM_001161368	exon11	c.G969C	p.K323N	CCCCATCTTGGTC	.	75	6	104	0	.	0	0	0	0	0
CARD10	29775	hgsc.bcm.edu	37	22	37915145	37915145	+	Silent	SNP	C	C	T	rs79861380		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CARD10-662	NM_014550	exon1	c.G63A	p.E21E	CTCCGCCTCAGAC	.	11	11	0	0	C|0.935;T|0.065	0	0	0	0	0
TCF20	6942	broad.mit.edu	37	22	42609400	42609400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TCF20-95	NM_181492	exon1	c.C1912A	p.P638T	TAGGTGGCCTTTG	.	94	5	112	1	.	1	1	0	0	0
PNPLA3	80339	bcgsc.ca	37	22	44322922	44322922	+	Missense_Mutation	SNP	T	T	G	rs2076213	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PNPLA3-90	NM_025225	exon2	c.T295G	p.C99G	GGTCTCTGCAAAT	.	115	8	160	0	T|0.735;G|0.060;C|0.016;A|0.189	0	0	0	0	0
PNPLA3	80339	bcgsc.ca	37	22	44322970	44322970	+	Missense_Mutation	SNP	G	G	T	rs2076212	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PNPLA3-90	NM_025225	exon2	c.G343T	p.G115C	AAAATAGGCATCT	.	175	10	215	0	G|0.868;T|0.132	0	0	0	0	0
CNTN4	152330	broad.mit.edu;bcgsc.ca	37	3	3030028	3030028	+	Splice_Site	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CNTN4-344	NM_175607	exon14	c.1359-1G>A	.	ATTTCAGAATTAC	.	60	5	49	1	.	0	0	0	0	0
LRRC3B	116135	bcgsc.ca	37	3	26751493	26751493	+	Silent	SNP	A	A	T	rs35497952	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	LRRC3B-94	NM_052953	exon2	c.A330T	p.G110G	CAAAGGAGTAGCT	.	117	6	89	0	A|0.899;T|0.101	0	0	0	0	0
FAM3D	131177	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58631299	58631299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	FAM3D-90	NM_138805	exon5	c.C200T	p.A67V	TTAAACGCAAAGT	.	102	59	129	2	.	0	0	0	0	0
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64536626	64536626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ADAMTS9-230	NM_182920	exon31	c.G4811A	p.R1604H	CTTTCACGGTCCA	.	178	101	191	0	.	0	0	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TSC22D2-91	NM_014779	exon1	c.G1255A	p.A419T	CAGAATGCTTCCT	.	12	8	0	0	G|0.797;A|0.203	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195508392	195508392	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MUC4-90	NM_018406	exon2	c.A10059T	p.V3353V	TGTGGATACTGAG	.	691	112	624	1	.	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195594805	195594805	+	Silent	SNP	A	A	G	rs1056749	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TNK2-957	NM_001010938	exon13	c.T2553C	p.A851A	AGGGGAAGCAGGT	.	18	7	0	0	A|0.886;G|0.114	5	3	2	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388755	1388755	+	Silent	SNP	C	C	G	rs141481663	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CRIPAK-90	NM_175918	exon1	c.C456G	p.P152P	CGTGCCCATGCGG	.	46	12	2	0	C|0.960;G|0.040	12	6	6	0	0
WHSC1	7468	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1905977	1905977	+	Missense_Mutation	SNP	G	G	A	rs192103195		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	WHSC1-664	NM_133335	exon3	c.G632A	p.G211E	ACACTGGAAGAGA	.	177	68	179	1	G|0.999;A|0.000	1	0	1	0	0
WFS1	7466	ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6302448	6302448	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	WFS1-91	NM_001145853	exon8	c.G926T	p.R309M	CCTCCAGGGCAGG	.	279	157	248	3	.	3	1	2	0	0
WFS1	7466	bcgsc.ca	37	4	6303354	6303354	+	Missense_Mutation	SNP	G	G	A	rs734312	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	WFS1-91	NM_001145853	exon8	c.G1832A	p.R611H	TGTTGCGCTGGTG	.	196	7	150	0	G|0.550;A|0.450	4	4	0	0	0
GABRB1	2560	bcgsc.ca	37	4	47322219	47322219	+	Silent	SNP	C	C	A	rs6284	bycluster;byfrequency;bysubmitter;by1000genomes	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GABRB1-92	NM_000812	exon5	c.C537A	p.I179I	GGAGATCGAAAGT	.	100	5	106	1	C|0.849;A|0.151	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537267	88537267	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DSPP-90	NM_014208	exon5	c.C3453T	p.S1151S	AAGCAGCGACAGC	.	589	27	531	7	.	0	0	0	0	0
TRPC3	7222	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122853648	122853648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRPC3-92	NM_001130698	exon2	c.G765T	p.K255N	GGCACCCTTCATC	.	262	87	218	0	.	0	0	0	0	0
INTU	27152	bcgsc.ca	37	4	128584580	128584580	+	Silent	SNP	G	G	A	rs4833380	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	INTU-91	NM_015693	exon4	c.G813A	p.T271T	GGAGACGTCCCAT	.	184	8	181	0	G|0.390;A|0.610	0	0	0	0	0
PCDH18	54510	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	138452025	138452025	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCDH18-185	NM_019035	exon1	c.A1218G	p.K406K	CTGAAGTTTAAAG	.	62	15	71	0	.	0	0	0	0	0
TRIM2	23321	bcgsc.ca	37	4	154216710	154216710	+	Silent	SNP	G	G	A	rs893805	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TRIM2-650	NM_015271	exon6	c.G1032A	p.T344T	CGGGACGATCTTA	.	195	7	191	0	G|0.511;A|0.489	0	0	0	0	0
DCHS2	54798	bcgsc.ca	37	4	155241572	155241572	+	Missense_Mutation	SNP	G	G	A	rs11935573	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	DCHS2-94	NM_017639	exon14	c.C3614T	p.S1205L	TTTCCTGAGAGGA	.	159	6	146	0	G|0.746;A|0.254	0	0	0	0	0
IRX4	50805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1879909	1879909	+	Missense_Mutation	SNP	C	C	A	rs200961337	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	IRX4-226	NM_016358	exon4	c.G445T	p.A149S	GCGTGGCGTTCTT	.	106	82	62	0	.	0	0	0	0	0
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16671084	16671084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO10-3	NM_012334	exon39	c.C5434A	p.H1812N	CTTCGTGGGCCTG	.	86	13	98	0	.	0	0	0	0	0
C9	735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	39308392	39308392	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	C9-90	NM_001737	exon8	c.A1180T	p.I394F	CAGAGATTTCAGA	.	161	73	144	2	.	0	0	0	0	0
MROH2B	133558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41032905	41032905	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_173489	exon24	c.C2380T	p.P794S	CCAGGGGCTCGTC	.	95	31	78	0	.	0	0	0	0	0
MSH3	4437	hgsc.bcm.edu	37	5	79950715	79950715	+	Missense_Mutation	SNP	G	G	C	rs144776112		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MSH3-661	NM_002439	exon1	c.G169C	p.A57P	GCAGCGGCCGCAG	.	26	14	3	0	G|0.834;C|0.166	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	38	11	0	0	.	13	6	7	0	0
PANK3	79646	ucsc.edu	37	5	167988433	167988433	+	Missense_Mutation	SNP	T	T	A	rs77612793	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PANK3-91	NM_024594	exon5	c.A901T	p.I301F	AACCAATGTTATT	.	42	14	18	5	T|0.947;A|0.053	4	4	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	5	5	0	0	G|0.585;C|0.415	0	0	0	0	0
HIST1H2BA	255626	bcgsc.ca	37	6	25727334	25727334	+	Silent	SNP	C	C	T	rs4712961	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	HIST1H2BA-204	NM_170610	exon1	c.C198T	p.S66S	GAATTCCTTCGTC	.	93	5	121	0	C|0.679;T|0.321	0	0	0	0	0
COL21A1	81578	bcgsc.ca	37	6	56044578	56044578	+	Silent	SNP	T	T	C	rs2038149	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	COL21A1-24	NM_030820	exon3	c.A438G	p.K146K	TTGGGATTTGCCA	.	198	8	213	3	T|0.330;C|0.670	0	0	0	0	0
EEF1A1	1915	bcgsc.ca	37	6	74227940	74227940	+	Silent	SNP	A	A	C	rs71481399	bycluster	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	EEF1A1-226	NM_001402	exon7	c.T1077G	p.P359P	CAATACAGGGGCA	.	104	13	211	6	C|1.000;|0.000	5579	5571	1	6	1
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20418693	20418693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ITGB8-227	NM_002214	exon4	c.G408A	p.M136I	TTTTATGCTGAAA	.	28	9	19	0	.	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	13	9	0	0	G|0.889;C|0.111	3	1	2	0	0
EPDR1	54749	hgsc.bcm.edu	37	7	37960577	37960577	+	Silent	SNP	C	C	A	rs147877097		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	EPDR1-91	NM_001242946	exon1	c.C36A	p.G12G	CCCGGGCGCCCTG	.	12	7	0	0	C|0.995;A|0.005	1	1	0	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005050	42005050	+	Missense_Mutation	SNP	G	G	T	rs147343252		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GLI3-1149	NM_000168	exon15	c.C3621A	p.S1207R	AGGCCCGCTCCTC	.	61	4	11	0	G|1.000;T|0.000	3	3	0	0	0
MYO1G	64005	hgsc.bcm.edu;mdanderson.org	37	7	45002430	45002430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MYO1G-137	NM_033054	exon22	c.C2965T	p.R989C	TGAGGCGCCGGAC	.	105	64	12	0	.	0	0	0	0	0
ZNF775	285971	broad.mit.edu	37	7	150093920	150093920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ZNF775-90	NM_173680	exon3	c.C351A	p.S117R	GTTCAGCTGGTGG	.	36	3	14	0	.	2	2	0	0	0
ASB10	136371	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	150873649	150873649	+	Splice_Site	SNP	C	C	A	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ASB10-226	NM_080871	exon5	c.1173+1G>T	.	ATCTGACCTGCAG	.	288	133	234	0	.	0	0	0	0	0
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157041208	157041208	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	UBE3C-704	NM_014671	exon19	c.C2628T	p.Y876Y	GAGCTACGAAGAC	.	109	7	90	0	.	11	11	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	114186110	114186110	+	Missense_Mutation	SNP	G	G	A	rs201775807	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	CSMD3-1132	NM_052900	exon4	c.C550T	p.P184S	TGGGTGGAACACC	.	78	31	50	0	G|0.999;C|0.001	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001588	145001588	+	Missense_Mutation	SNP	C	C	T	rs11136334	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PLEC-141	NM_201380	exon27	c.G4157A	p.R1386Q	TCCTGCCGCAGCT	.	11	4	1	0	C|0.707;T|0.293	0	0	0	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145107390	145107390	+	Missense_Mutation	SNP	C	C	T	rs185836803		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OPLAH-68	NM_017570	exon23	c.G3265A	p.V1089I	GGATGACATCCAC	.	21	15	0	0	C|0.998;T|0.002	30	14	16	0	0
TUSC1	286319	hgsc.bcm.edu	37	9	25678122	25678122	+	Silent	SNP	G	G	C	rs72631814	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TUSC1-90	NM_001004125	exon1	c.C198G	p.A66A	CAGGTCGGCAAAC	.	10	10	0	0	G|0.807;C|0.193	3	0	3	0	0
UBAP2	55833	bcgsc.ca	37	9	33941759	33941759	+	Missense_Mutation	SNP	T	T	C	rs307658	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	UBAP2-94	NM_018449	exon16	c.A1817G	p.N606S	GCAGAATTCAGTG	.	85	4	125	1	T|0.481;G|0.077	3	3	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35716437	35716437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	TLN1-609	NM_006289	exon20	c.G2575A	p.A859T	TGGCAGCACTTAA	.	101	86	148	0	.	7	2	5	0	0
VPS13A	23230	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79954597	79954597	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	VPS13A-161	NM_001018038	exon48	c.A6544T	p.S2182C	TTTGTCAGTTTTA	.	100	49	103	1	.	0	0	0	0	0
ALG2	85365	hgsc.bcm.edu	37	9	101984160	101984160	+	Missense_Mutation	SNP	C	C	G	rs180849348	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ALG2-92	NM_033087	exon1	c.G17C	p.G6A	TCCCGGCCCTGCT	.	7	6	0	0	C|0.996;G|0.004	5	0	5	0	0
SNAPC4	6621	broad.mit.edu	37	9	139277995	139277997	+	In_Frame_Del	DEL	GCT	GCT	-	rs34222232	alternate_allele	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SNAPC4-90	NM_003086	exon15	c.1624_1626del	p.542_542del	CTCCTCGCTGCTG	.	173	7	25	0	.	0	0	0	0	0
GLRA2	2742	bcgsc.ca	37	X	14627144	14627144	+	Silent	SNP	T	T	C	rs2229963	byfrequency	TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	GLRA2-131	NM_002063	exon7	c.T747C	p.H249H	GTTTCATCTGGAA	.	158	7	123	0	0|0.003;C|0.269	0	0	0	0	0
IL13RA1	3597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117925779	117925779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	IL13RA1-554	NM_001560	exon11	c.G1246T	p.V416L	GACTCTGTAGTGC	.	141	48	106	1	.	12	12	0	0	0
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	129155104	129155104	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	BCORL1-294	NM_021946	exon4	c.C3586T	p.R1196X	GGAAAACGAGCCG	.	321	158	208	1	.	2	1	1	0	0
MAP7D3	79649	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	135313873	135313873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	MAP7D3-110	NM_024597	exon8	c.G1243A	p.E415K	GTGCTTCCAGGCT	.	183	90	148	1	.	1	0	1	0	0
PARD6A	50855	broad.mit.edu	37	16	67695546	67695547	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	PARD6A-91	NM_016948	exon2	c.252_253insC	p.G84fs	CAGCGGGCCCCCG	.	102	7	7	0	.	0	0	0	0	0
TMEM247	388946	hgsc.bcm.edu	37	2	46707846	46707847	+	In_Frame_Ins	INS	-	-	GAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	.	NM_001145051	exon2	c.420_421insGAGCGGCAGCACGAGGTGGTGATGGAGCAGCTGCAGCGG	p.R140delinsRERQHEVVMEQLQR	GCAGCGGGAGCGG	.	326	0	63	0	.	0	0	0	0	0
ATXN1	6310	broad.mit.edu	37	6	16327915	16327916	+	In_Frame_Ins	INS	-	-	TGC	rs71806515		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	ATXN1-93	NM_001128164	exon7	c.627_628insGCA	p.H209delinsQH	ATGCTGATGCTGC	.	27	15	9	0	.	0	0	0	0	0
SND1	27044	hgsc.bcm.edu	37	7	127292433	127292434	+	In_Frame_Ins	INS	-	-	TCCTCCGCGCAGAGCGGCGGC	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	SND1-92	NM_014390	exon1	c.6_7insTCCTCCGCGCAGAGCGGCGGC	p.A2delinsASSAQSGG	CATGGCGTCCTCC	.	246	0	59	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504670	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-OR-A5LC-01A-11D-A29I-10	TCGA-OR-A5LC-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	ac52d603-5586-46ae-8350-faf87562f84f	bbcdc4cf-36e7-4ffe-a129-924a463c3f5e	.	OBSCN-403	NM_001271223	exon62	c.C16417T	p.R5228W	TCTGCGCGGCTCA	.	17	0	0	0	C|0.643;T|0.357	0	0	0	0	0