Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ACAP3	116983	broad.mit.edu;bcgsc.ca	37	1	1230833	1230833	+	Missense_Mutation	SNP	G	G	T	rs144585204		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ACAP3-90	NM_030649	exon19	c.C1807A	p.P603T	TGCGAGGGCCAGC	.	170	12	227	2	G|1.000;T|0.000	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614391	6614391	+	Missense_Mutation	SNP	A	A	C	rs6693391	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NOL9-515	NM_024654	exon1	c.T172G	p.S58A	CGCCGGACGCCTG	.	17	17	0	0	A|0.047;C|0.953	0	0	0	0	0
NOL9	79707	hgsc.bcm.edu	37	1	6614415	6614415	+	Missense_Mutation	SNP	A	A	G	rs6693400		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NOL9-515	NM_024654	exon1	c.T148C	p.W50R	ACCGCCACCGTAG	.	6	6	0	0	A|0.020;G|0.980	0	0	0	0	0
SRM	6723	hgsc.bcm.edu	37	1	11119899	11119899	+	Silent	SNP	T	T	C	rs7545802		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	SRM-90	NM_003132	exon1	c.A102G	p.S34S	CTGCAGTGACAGG	.	5	5	0	0	T|0.001;C|0.999	0	0	0	0	0
DHRS3	9249	bcgsc.ca	37	1	12640650	12640650	+	Silent	SNP	C	C	T	rs11540058	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	DHRS3-91	NM_004753	exon2	c.G240A	p.T80T	CTCCTCCGTCGTC	.	166	6	154	0	C|0.868;T|0.132	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	19	18	0	0	G|0.061;T|0.939	0	0	0	0	0
ZCCHC17	51538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	31819587	31819587	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZCCHC17-91	NM_016505	exon6	c.G418T	p.G140C	TGTAAAGGTAGGG	.	106	36	105	0	.	0	0	0	0	0
LEPR	3953	ucsc.edu;bcgsc.ca	37	1	66087142	66087142	+	Splice_Site	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	LEPR-91	NM_001003679	exon18	c.2597+1G>T	.	CCAAAGGTATTGT	.	37	4	39	0	.	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233578	153233578	+	Silent	SNP	C	C	T	rs1143389	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	LOR-90	NM_000427	exon2	c.C153T	p.C51C	TGGCTGCGGCTAC	.	13	13	2	0	C|0.818;T|0.182	0	0	0	0	0
LOR	4014	hgsc.bcm.edu	37	1	153233701	153233701	+	Silent	SNP	A	A	C	rs1143390	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	LOR-90	NM_000427	exon2	c.A276C	p.G92G	CTCCGGAGGCGGC	.	9	8	1	0	A|0.594;C|0.406	0	0	0	0	0
FMO3	2328	bcgsc.ca	37	1	171083226	171083226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FMO3-187	NM_001002294	exon7	c.G907T	p.V303L	CCTAACGTGAAGG	.	89	4	106	0	.	0	0	0	0	0
CAPN9	10753	bcgsc.ca	37	1	230903350	230903350	+	Silent	SNP	T	T	C	rs3828126	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CAPN9-91	NM_006615	exon5	c.T600C	p.T200T	CTTCACTGGGGGT	.	83	4	98	0	T|0.736;C|0.264	0	0	0	0	0
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	27322227	27322227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ANKRD26-138	NM_014915	exon25	c.C3734T	p.T1245M	CGTGACGTAACCT	.	63	46	109	0	.	0	0	0	0	0
CNNM1	26507	hgsc.bcm.edu	37	10	101089772	101089772	+	Silent	SNP	C	C	A	rs112168939	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CNNM1-68	NM_020348	exon1	c.C628A	p.R210R	CGCCCGCGGTTGT	.	8	8	0	0	C|0.983;A|0.017	0	0	0	0	0
EMX2	2018	bcgsc.ca	37	10	119305202	119305202	+	Silent	SNP	C	C	A	rs8192642	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	EMX2-90	NM_004098	exon2	c.C466A	p.R156R	CCCAAGCGGATCC	.	304	10	379	6	C|0.988;A|0.012	0	0	0	0	0
PRKCDBP	112464	hgsc.bcm.edu	37	11	6341365	6341365	+	Silent	SNP	C	C	T	rs11544764	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PRKCDBP-115	NM_145040	exon1	c.G342A	p.G114G	CAGCAGCCCGTGG	.	14	13	0	0	C|0.902;T|0.098	0	0	0	0	0
PRKCDBP	112464	hgsc.bcm.edu	37	11	6341397	6341397	+	Missense_Mutation	SNP	C	C	T	rs10839551	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PRKCDBP-115	NM_145040	exon1	c.G310A	p.A104T	CCTGGGCTGCGCG	.	20	17	0	0	C|0.990;T|0.010	0	0	0	0	0
NAALADL1	10004	bcgsc.ca	37	11	64813685	64813685	+	Missense_Mutation	SNP	G	G	C	rs36053340	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NAALADL1-90	NM_005468	exon15	c.C1831G	p.L611V	GCTCCAGCAGGGC	.	84	4	103	0	G|0.964;C|0.036	0	0	0	0	0
NADSYN1	55191	bcgsc.ca	37	11	71169547	71169547	+	Missense_Mutation	SNP	G	G	C	rs2276360	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NADSYN1-92	NM_018161	exon3	c.G220C	p.V74L	GCCCTTGTGGAGT	.	175	9	158	0	G|0.448;C|0.552	0	0	0	0	0
GLB1L3	112937	broad.mit.edu	37	11	134147265	134147265	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	GLB1L3-69	NM_001080407	exon2	c.A69C	p.P23P	CCTGCCATTTATC	.	78	10	120	5	.	0	0	0	0	0
WNK1	65125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	966392	966392	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	WNK1-916	NM_001184985	exon5	c.C1377A	p.C459X	AGGATGCATACGA	.	336	64	231	1	.	0	0	0	0	0
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14578126	14578126	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ATF7IP-252	NM_018179	exon2	c.A1277G	p.N426S	TAGAAAATACAGA	.	71	30	57	0	.	0	0	0	0	0
PLBD1	79887	hgsc.bcm.edu	37	12	14720583	14720583	+	Silent	SNP	T	T	C	rs7954623		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PLBD1-90	NM_024829	exon1	c.A48G	p.P16P	AAGCGGTGGCGGC	.	7	7	0	0	T|0.056;C|0.944	0	0	0	0	0
RECQL	5965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21624011	21624011	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RECQL-228	NM_032941	exon15	c.T1689G	p.A563A	AGCATAAGCTGTA	.	141	60	97	0	.	0	0	0	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	25	24	0	0	A|0.133;G|0.867	0	0	0	0	0
CTDSP2	10106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58217464	58217464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CTDSP2-514	NM_005730	exon8	c.T737C	p.L246P	AGGTTCAGCAACT	.	184	73	126	0	.	0	0	0	0	0
GAS2L3	283431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101005850	101005850	+	Missense_Mutation	SNP	G	G	C	rs143611209	byfrequency;alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	GAS2L3-227	NM_174942	exon6	c.G376C	p.A126P	AATACCGCAAACT	.	207	32	126	0	G|1.000;T|0.000	0	0	0	0	0
RIMBP2	23504	hgsc.bcm.edu	37	12	130921471	130921471	+	Silent	SNP	T	T	C	rs2292663	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RIMBP2-142	NM_015347	exon10	c.A1971G	p.P657P	TGGCTGTGGCAGG	.	89	48	6	0	T|0.868;C|0.132	0	0	0	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_032849	exon1	c.A175G	p.R59G	GTGGCCAGGCCCG	.	17	17	0	0	A|0.219;G|0.781	0	0	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	13	13	0	0	C|0.372;T|0.628	0	0	0	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	7	7	0	0	C|0.569;G|0.431	0	0	0	0	0
PLEKHH1	57475	broad.mit.edu	37	14	68045912	68045912	+	Missense_Mutation	SNP	G	G	A	rs201225859		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PLEKHH1-22	NM_020715	exon21	c.G2911A	p.G971R	CGGACCGGGGAGC	.	82	4	101	0	G|0.999;A|0.000	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	7	5	1	0	G|0.327;T|0.673	0	0	0	0	0
TLE3	7090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	70349954	70349954	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	TLE3-522	NM_005078	exon13	c.G1104A	p.A368A	GGGCGCCGCATAG	.	49	37	50	0	.	0	0	0	0	0
MESDC1	59274	hgsc.bcm.edu	37	15	81295416	81295416	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	MESDC1-90	NM_022566	exon1	c.G804T	p.P268P	CGAGCCGCAGTTC	.	41	4	1	0	.	0	0	0	0	0
MESP2	145873	hgsc.bcm.edu	37	15	90320146	90320146	+	Silent	SNP	G	G	A	rs28546919	bycluster	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	MESP2-68	NM_001039958	exon1	c.G558A	p.Q186Q	GGGGCAGGGGCAG	.	5	4	0	0	A|1.000;|0.000	0	0	0	0	0
MESP2	145873	hgsc.bcm.edu	37	15	90320149	90320149	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	MESP2-68	NM_001039958	exon1	c.G561A	p.G187G	GCAGGGGCAGGGG	.	5	4	0	0	.	0	0	0	0	0
RCCD1	91433	hgsc.bcm.edu	37	15	91499986	91499986	+	Missense_Mutation	SNP	G	G	T	rs4932380		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RCCD1-90	NM_001017919	exon2	c.G22T	p.A8S	CCGGGGGCCTGGT	.	44	8	1	0	G|0.822;T|0.178	0	0	0	0	0
FBXL16	146330	bcgsc.ca	37	16	746914	746914	+	Silent	SNP	G	G	A	rs4984915	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FBXL16-226	NM_153350	exon2	c.C492T	p.A164A	TCTGGCGGCAAAA	.	201	7	168	0	G|0.718;A|0.282	0	0	0	0	0
C16orf90	646174	bcgsc.ca	37	16	3544745	3544745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_001080524	exon2	c.G179A	p.R60H	AGGTGGCGCAGCC	.	108	47	32	1	.	0	0	0	0	0
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	27523174	27523190	+	Frame_Shift_Del	DEL	CGTTTAAATTCCTTCAG	CGTTTAAATTCCTTCAG	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	CGTTTAAATTCCTTCAG	CGTTTAAATTCCTTCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	GTF3C1-94	NM_001520	exon7	c.1006_1022del	p.336_341del	TCATTCCGTTTAA	.	211	18	156	0	.	0	0	0	0	0
PYCARD	29108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	31213958	31213958	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PYCARD-651	NM_013258	exon1	c.G54A	p.E18E	GAGCTCCTCGGCG	.	166	35	38	0	.	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	15	15	0	0	T|0.035;G|0.004	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	29	17	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	27	0	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	20	18	1	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	20	20	0	0	.	0	0	0	0	0
NCOR1	9611	hgsc.bcm.edu	37	17	16097787	16097787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NCOR1-229	NM_001190438	exon1	c.C97A	p.R33S	GGTGGCGGGTGTT	.	80	4	86	0	.	0	0	0	0	0
NF1	4763	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	29661949	29661949	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NF1-3353	NM_001042492	exon40	c.5906delA	p.Q1969fs	AACGACAAAGAGT	.	98	62	82	0	.	0	0	0	0	0
ASB16	92591	hgsc.bcm.edu	37	17	42254417	42254417	+	Missense_Mutation	SNP	A	A	G	rs7212854	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ASB16-227	NM_080863	exon3	c.A881G	p.N294S	GTGCCAACGGCTG	.	14	11	0	0	A|0.590;G|0.410	0	0	0	0	0
EFCAB13	124989	bcgsc.ca	37	17	45452257	45452257	+	Nonsense_Mutation	SNP	A	A	T	rs74969489	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_152347	exon12	c.A1297T	p.K433X	CTTCAGAAGCCAG	.	106	5	129	0	A|0.989;T|0.011	0	0	0	0	0
VEZF1	7716	bcgsc.ca	37	17	56056604	56056604	+	Silent	SNP	T	T	C	rs138088904	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	VEZF1-136	NM_007146	exon5	c.A1047G	p.Q349Q	TTGTTGTTGCTGC	.	92	6	101	0	T|0.999;C|0.001	0	0	0	0	0
CTDP1	9150	hgsc.bcm.edu	37	18	77440128	77440128	+	Missense_Mutation	SNP	T	T	G	rs17855830	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CTDP1-90	NM_004715	exon1	c.T181G	p.S61A	CAGTCCTCCGGGG	.	4	4	0	0	T|0.401;G|0.599	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	920642	920642	+	Missense_Mutation	SNP	T	T	A	rs350132		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KISS1R-91	NM_032551	exon5	c.T1091A	p.L364H	AGCTGCTCCGCCT	.	5	5	0	0	T|0.232;A|0.768	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929678	929678	+	Silent	SNP	G	G	A	rs3826948		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ARID3A-90	NM_005224	exon2	c.G150A	p.E50E	GCCCGAGAGTGCC	.	6	5	0	0	T|0.495;C|0.504	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ARID3A-90	NM_005224	exon2	c.A225G	p.P75P	ACACCCAGCCAGC	.	16	16	0	0	A|0.114;G|0.886	0	0	0	0	0
APC2	10297	hgsc.bcm.edu	37	19	1467684	1467684	+	Silent	SNP	A	A	C	rs265273	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	APC2-290	NM_005883	exon15	c.A4384C	p.R1462R	AAGAACAGAGCAG	.	5	5	0	0	A|0.030;C|0.970	0	0	0	0	0
ANKRD24	170961	hgsc.bcm.edu	37	19	4217919	4217919	+	Missense_Mutation	SNP	G	G	A	rs142674065		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ANKRD24-68	NM_133475	exon18	c.G2762A	p.R921Q	ACCGCCGGCTGCA	.	10	10	0	0	G|0.980;A|0.020	0	0	0	0	0
KANK3	256949	hgsc.bcm.edu	37	19	8399635	8399635	+	Missense_Mutation	SNP	C	C	T	rs890853	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KANK3-90	NM_198471	exon3	c.G1076A	p.R359H	CTGGCGCGCAGCA	.	12	10	1	0	C|0.769;T|0.231	0	0	0	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FBXO17-226	NM_148169	exon2	c.A69G	p.P23P	CAGGGATGGGTCC	.	38	32	1	0	T|0.545;C|0.455	0	0	0	0	0
LIPE	3991	hgsc.bcm.edu	37	19	42906024	42906024	+	Silent	SNP	G	G	A	rs36104839	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	LIPE-154	NM_005357	exon10	c.C3171T	p.A1057A	CGGCCCGGCTCCG	.	6	6	1	0	G|0.984;A|0.016	0	0	0	0	0
PRR24	255783	hgsc.bcm.edu	37	19	47778412	47778412	+	Missense_Mutation	SNP	G	G	T	rs1055218		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_178511	exon1	c.G236T	p.R79L	CTGCCCGCCCGGG	.	5	5	0	0	G|0.585;T|0.415	0	0	0	0	0
TULP2	7288	bcgsc.ca	37	19	49400634	49400634	+	Missense_Mutation	SNP	C	C	T	rs7260579	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	TULP2-93	NM_003323	exon3	c.G52A	p.A18T	TAGCAGCGAGCTC	.	180	6	167	0	C|0.803;T|0.197	0	0	0	0	0
MYH14	79784	hgsc.bcm.edu	37	19	50713713	50713713	+	Missense_Mutation	SNP	C	C	A	rs590722		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	MYH14-23	NM_001077186	exon2	c.C91A	p.P31T	TTCACGCCCCGCG	.	10	10	0	0	T|0.171;G|0.829	0	0	0	0	0
ASPDH	554235	hgsc.bcm.edu	37	19	51015404	51015404	+	Missense_Mutation	SNP	T	T	C	rs12977172	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ASPDH-90	NM_001114598	exon6	c.A797G	p.Q266R	AGGCTCTGCCAGA	.	13	11	2	0	T|0.228;C|0.772	0	0	0	0	0
KLK1	3816	bcgsc.ca	37	19	51323501	51323501	+	Silent	SNP	A	A	G	rs1054713	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KLK1-226	NM_002257	exon3	c.T405C	p.D135D	CACAGCATCTGTG	.	118	7	170	1	A|0.298;G|0.702	0	0	0	0	0
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54393237	54393237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PRKCG-1367	NM_002739	exon5	c.495delC	p.I165fs	GGAGATCCGGGCT	.	57	24	39	0	.	0	0	0	0	0
ZNF787	126208	hgsc.bcm.edu	37	19	56599438	56599440	+	In_Frame_Del	DEL	TCG	TCG	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	TCG	TCG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZNF787-69	NM_001002836	exon3	c.1101_1103del	p.367_368del	GCGGCCTCGTCGT	.	26	25	4	4	.	0	0	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_016030	exon2	c.C432T	p.A144A	CGAAGCCGCGCGC	.	9	5	0	0	C|0.719;T|0.281	0	0	0	0	0
XDH	7498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31572920	31572920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	XDH-158	NM_000379	exon25	c.C2801A	p.T934N	CCACAGGTCACTG	.	55	17	74	0	.	0	0	0	0	0
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39187519	39187519	+	Silent	SNP	A	A	G	rs958412		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ARHGEF33-46	NM_001145451	exon14	c.A2073G	p.K691K	CTACAAACTGGAG	.	6	6	0	0	A|0.086;G|0.914	0	0	0	0	0
RNF149	284996	hgsc.bcm.edu	37	2	101925026	101925026	+	Missense_Mutation	SNP	T	T	C	rs11123868	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RNF149-290	NM_173647	exon1	c.A25G	p.S9G	CGACGCTGGCTTC	.	19	13	2	0	T|0.543;C|0.457	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	C2orf40-90	NM_032411	exon1	c.T6C	p.A2A	CATGGCTGCCTCC	.	36	4	2	0	T|0.765;C|0.235	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	16	16	0	0	A|0.029;G|0.971	0	0	0	0	0
GPR39	2863	bcgsc.ca	37	2	133174764	133174764	+	Missense_Mutation	SNP	C	C	T	rs2241764	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	GPR39-226	NM_001508	exon1	c.C149T	p.A50V	ACAGCGCCACCAT	.	214	10	203	2	C|0.618;T|0.381	0	0	0	0	0
CHPF	79586	bcgsc.ca	37	2	220404648	220404648	+	Silent	SNP	C	C	T	rs1043833	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CHPF-90	NM_024536	exon4	c.G1785A	p.L595L	GAGGCGCAGTGGT	.	299	10	293	4	C|0.644;T|0.356	0	0	0	0	0
PRR21	643905	bcgsc.ca	37	2	240982228	240982228	+	Missense_Mutation	SNP	C	C	T	rs10439373	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PRR21-70	NM_001080835	exon1	c.G172A	p.G58S	AAGGGCCGTGGGT	.	360	13	380	6	C|0.491;T|0.509	0	0	0	0	0
ANO7	50636	bcgsc.ca	37	2	242129487	242129487	+	Silent	SNP	G	G	T	rs11695874	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ANO7-92	NM_001001666	exon2	c.G171T	p.R57R	GCTGCGGCGACGG	.	266	9	323	2	G|0.805;T|0.195	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632680	29632680	+	RNA	SNP	G	G	A	rs4892355		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FRG1B-22	.	.	.	.	TAAAAAGGCTCAG	.	317	35	502	20	G|0.500;A|0.500	0	0	0	0	0
FAM83C	128876	bcgsc.ca	37	20	33875562	33875562	+	Silent	SNP	C	C	T	rs141723001	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FAM83C-92	NM_178468	exon4	c.G1020A	p.S340S	CAGGGACGACGTG	.	289	9	237	3	C|0.992;T|0.008	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	42	17	3	0	C|0.769;T|0.231	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	SCARF2-341	NM_153334	exon11	c.G2187C	p.P729P	CAGCCCCGGGGGG	.	28	26	0	0	C|0.138;G|0.862	0	0	0	0	0
MED15	51586	broad.mit.edu	37	22	20918916	20918918	+	In_Frame_Del	DEL	CAG	CAG	-	rs72277642	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	MED15-211	NM_015889	exon6	c.631_633del	p.211_211del	CAGCTCCAGCAGC	.	156	7	180	0	.	0	0	0	0	0
MIR650	723778	bcgsc.ca	37	22	23165624	23165624	+	RNA	SNP	C	C	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	.	.	.	.	AGCCCCCAAACTC	.	193	48	207	2	.	0	0	0	0	0
TMPRSS6	164656	bcgsc.ca	37	22	37485724	37485724	+	Missense_Mutation	SNP	T	T	C	rs2235324	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	TMPRSS6-292	NM_153609	exon7	c.A757G	p.K253E	GGTCCTTGGGGCC	.	180	6	364	2	T|0.615;C|0.385	0	0	0	0	0
ATP6V1A	523	broad.mit.edu;bcgsc.ca	37	3	113528258	113528258	+	Missense_Mutation	SNP	G	G	A	rs140346248	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ATP6V1A-93	NM_001690	exon15	c.G1838A	p.R613H	CATTCCGTAGCCT	.	271	10	285	0	G|1.000;C|0.000	0	0	0	0	0
ST6GAL1	6480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186793513	186793513	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ST6GAL1-650	NM_003032	exon7	c.T1143C	p.H381H	GAAGCATCTCAAC	.	87	28	89	0	.	0	0	0	0	0
CRIPAK	285464	bcgsc.ca	37	4	1388819	1388819	+	Missense_Mutation	SNP	T	T	C	rs144797159	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CRIPAK-90	NM_175918	exon1	c.T520C	p.C174R	TGCCCATGTGGAG	.	271	35	30	1	T|0.950;C|0.050	0	0	0	0	0
CRMP1	1400	hgsc.bcm.edu	37	4	5894586	5894586	+	Silent	SNP	G	G	A	rs143304363		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CRMP1-92	NM_001014809	exon1	c.C111T	p.A37A	CACCGCGGCGAAC	.	35	12	0	0	G|0.946;A|0.054	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	11	11	0	0	G|0.794;C|0.206	0	0	0	0	0
LOC550113	0	bcgsc.ca;mdanderson.org	37	4	68928345	68928345	+	RNA	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	.	.	.	.	TCTTCTCCAGAGC	.	146	59	113	0	.	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662248	77662248	+	Silent	SNP	G	G	A	rs60216375	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	SHROOM3-93	NM_020859	exon5	c.G2922A	p.S974S	GGCGTCGGCCTCC	.	25	25	0	0	G|0.531;A|0.469	0	0	0	0	0
C4orf32	132720	hgsc.bcm.edu	37	4	113066831	113066831	+	Missense_Mutation	SNP	G	G	A	rs10002700		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	C4orf32-90	NM_152400	exon1	c.G95A	p.G32E	GGACCGGGTGGGA	.	11	11	0	0	G|0.022;A|0.978	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu	37	5	191992	191992	+	Silent	SNP	G	G	A	rs34710524	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	LRRC14B-69	NM_001080478	exon1	c.G339A	p.T113T	CCTCACGGGCATC	.	18	17	1	0	G|0.975;A|0.025	0	0	0	0	0
IRX4	50805	hgsc.bcm.edu	37	5	1882129	1882129	+	Silent	SNP	T	T	G	rs2232374	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	IRX4-226	NM_016358	exon2	c.A90C	p.G30G	GCGGCCTCCGGAC	.	19	8	2	0	T|0.735;G|0.265	0	0	0	0	0
NSUN2	54888	hgsc.bcm.edu	37	5	6633042	6633042	+	Silent	SNP	C	C	T	rs10062086	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NSUN2-91	NM_017755	exon1	c.G51A	p.E17E	CGCGTCCTCCGGC	.	10	10	0	0	C|0.687;T|0.313	0	0	0	0	0
PROB1	389333	hgsc.bcm.edu	37	5	138730037	138730037	+	Missense_Mutation	SNP	T	T	C	rs11748963		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_001161546	exon1	c.A734G	p.Q245R	GCGGCCTGCAGGG	.	22	9	1	0	T|0.632;C|0.368	0	0	0	0	0
GABRA6	2559	broad.mit.edu	37	5	161128694	161128694	+	Missense_Mutation	SNP	C	C	G	rs150186322		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	GABRA6-163	NM_000811	exon9	c.C1277G	p.P426R	TCTTCCCAGTTGC	.	228	6	169	1	C|1.000;G|0.000	0	0	0	0	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PPP1R3G-136	NM_001145115	exon1	c.G492C	p.L164L	GCGCCTGCGAAGC	.	8	8	0	0	G|0.000;C|1.000	0	0	0	0	0
HIST1H4E	8367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26204877	26204877	+	Missense_Mutation	SNP	C	C	T	rs201304438	alternate_allele	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	HIST1H4E-69	NM_003545	exon1	c.C5T	p.S2F	TCATGTCTGGTCG	.	74	30	75	0	C|0.999;G|0.000	0	0	0	0	0
HLA-C	3107	bcgsc.ca	37	6	31239449	31239449	+	Missense_Mutation	SNP	C	C	G	rs28626310	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	HLA-C-90	NM_002117	exon2	c.G270C	p.K90N	CTTGTACTTCTGT	.	253	8	166	2	C|0.840;G|0.160	0	0	0	0	0
CAPN11	11131	broad.mit.edu;bcgsc.ca	37	6	44137262	44137262	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CAPN11-136	NM_007058	exon3	c.G333T	p.R111R	GCAGCGGCCCAAG	.	88	5	191	2	.	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72945399	72945399	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RIMS1-144	NM_014989	exon8	c.C1825G	p.P609A	ACCATGCCCAAAG	.	114	34	119	0	.	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	72945409	72945409	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RIMS1-144	NM_014989	exon8	c.C1835G	p.S612X	AAGACTCAGGTGC	.	114	34	113	0	.	0	0	0	0	0
KCNQ5	56479	hgsc.bcm.edu	37	6	73332040	73332040	+	Silent	SNP	C	C	G	rs3734212	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KCNQ5-158	NM_001160132	exon1	c.C123G	p.S41S	GGAGTCCGGCCGG	.	12	12	0	0	C|0.505;G|0.495	0	0	0	0	0
FAM26F	441168	hgsc.bcm.edu	37	6	116783390	116783390	+	Silent	SNP	A	A	G	rs10784	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FAM26F-68	NM_001010919	exon2	c.G298G	p.A100A	GTGTGCACGCAAA	.	9	9	0	0	A|0.272;G|0.728	0	0	0	0	0
EYA4	2070	bcgsc.ca	37	6	133849868	133849868	+	Silent	SNP	C	C	T	rs142721902	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	EYA4-578	NM_172105	exon20	c.C1845T	p.N615N	GCACAACATGCCC	.	114	6	133	1	C|0.989;T|0.011	0	0	0	0	0
RAET1G	353091	bcgsc.ca	37	6	150240829	150240829	+	Missense_Mutation	SNP	G	G	C	rs9397449	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	RAET1G-90	NM_001001788	exon2	c.C209G	p.T70R	GTGACTGTCTTGC	.	570	13	599	4	G|0.807;C|0.193	0	0	0	0	0
TBP	6908	hgsc.bcm.edu	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	52	10	62	0	.	0	0	0	0	0
TBP	6908	mdanderson.org	37	6	170871013	170871013	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	TBP-91	NM_003194	exon3	c.A189G	p.Q63Q	ACAACAACAGCAG	.	54	13	63	0	.	0	0	0	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5372406	5372406	+	Silent	SNP	G	G	T	rs13238738	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	TNRC18-46	NM_001080495	exon19	c.C5994A	p.R1998R	CTCGCTGCGGCGC	.	25	9	0	0	G|0.411;T|0.589	0	0	0	0	0
CCDC129	223075	bcgsc.ca	37	7	31682453	31682453	+	Missense_Mutation	SNP	C	C	T	rs4141001	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_001257968	exon11	c.C1547T	p.A516V	AAGAAGCGAATGC	.	243	8	162	0	C|0.269;T|0.731	0	0	0	0	0
POLD2	5425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44156093	44156093	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	POLD2-229	NM_006230	exon7	c.A902G	p.K301R	GTTTTCTTGGTGA	.	88	14	91	0	.	0	0	0	0	0
VOPP1	81552	hgsc.bcm.edu	37	7	55639970	55639970	+	Silent	SNP	G	G	A	rs200450690		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_030796	exon1	c.C48T	p.L16L	CTCCAAGAGCAGC	.	12	11	0	0	G|0.994;A|0.006	0	0	0	0	0
KCP	375616	hgsc.bcm.edu	37	7	128550681	128550681	+	Splice_Site	DEL	C	C	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KCP-68	NM_001135914	exon2	c.49+1G>-	.	CCAGGGCCCCCGA	.	28	28	1	1	.	0	0	0	0	0
ZNF282	8427	broad.mit.edu	37	7	148892715	148892715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZNF282-90	NM_003575	exon1	c.C34A	p.Q12K	CCTCAGCAGCTGG	.	124	7	41	0	.	0	0	0	0	0
ZNF775	285971	hgsc.bcm.edu	37	7	150094851	150094851	+	Missense_Mutation	SNP	A	A	G	rs13225910		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZNF775-90	NM_173680	exon3	c.A1282G	p.T428A	CGGGACACGCTGT	.	23	15	3	0	A|0.578;G|0.422	0	0	0	0	0
XKR5	389610	hgsc.bcm.edu	37	8	6692968	6692968	+	Silent	SNP	C	C	T	rs2977806	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	XKR5-90	NM_207411	exon1	c.G48A	p.E16E	GCTCTGCTCGGCC	.	9	8	0	0	C|0.487;T|0.513	0	0	0	0	0
ZNF703	80139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	37554967	37554967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZNF703-523	NM_025069	exon2	c.C548T	p.S183F	CGTCCTCCTCGTC	.	72	23	33	0	.	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	41	38	4	4	.	0	0	0	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	SCRIB-228	NM_015356	exon32	c.A4350G	p.P1450P	CAGGGGTGGGGGG	.	15	15	0	0	T|0.010;C|0.990	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144998169	144998169	+	Silent	SNP	C	C	T	rs1140522	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PLEC-141	NM_201380	exon31	c.G6339A	p.A2113A	CTCCGCCGCCAGC	.	46	20	2	0	C|0.740;T|0.260	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	36	36	0	0	G|0.992;C|0.006	0	0	0	0	0
C9orf66	157983	hgsc.bcm.edu	37	9	214706	214706	+	Missense_Mutation	SNP	G	G	C	rs540473	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	C9orf66-514	NM_152569	exon1	c.C691G	p.R231G	AGTATCGGGAGGC	.	10	8	2	0	G|0.516;C|0.484	0	0	0	0	0
KIAA0020	9933	bcgsc.ca	37	9	2811505	2811505	+	Silent	SNP	G	G	A	rs2270888	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KIAA0020-91	NM_014878	exon15	c.C1491T	p.H497H	TTGGGCGTGTTCT	.	110	7	135	2	A|0.416;C|0.000;G|0.584;T|0.000	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	40	36	2	0	G|0.572;C|0.428	0	0	0	0	0
KIAA2026	158358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5969127	5969127	+	Silent	SNP	G	G	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	KIAA2026-92	NM_001017969	exon3	c.C1104G	p.T368T	TTCCCAGGTCCTA	.	91	28	73	0	.	0	0	0	0	0
SHB	6461	hgsc.bcm.edu	37	9	38068532	38068532	+	Silent	SNP	A	A	G	rs3750444	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	SHB-92	NM_003028	exon1	c.T111C	p.P37P	CTGCGAAGGCCGC	.	6	6	0	0	A|0.411;G|0.589	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	10	10	0	0	A|0.235;G|0.765	0	0	0	0	0
WDR34	89891	hgsc.bcm.edu	37	9	131418828	131418828	+	Missense_Mutation	SNP	A	A	C	rs4837292		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	WDR34-92	NM_052844	exon1	c.T178G	p.W60G	TCTCCCAGCGGAT	.	5	5	0	0	A|0.006;C|0.994	0	0	0	0	0
SMC1A	8243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53440047	53440047	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	SMC1A-232	NM_006306	exon5	c.T657C	p.A219A	TACCTGAGCCCGT	.	139	20	103	0	.	0	0	0	0	0
ZXDB	158586	hgsc.bcm.edu	37	X	57618845	57618845	+	Missense_Mutation	SNP	G	G	A	rs199513692		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZXDB-130	NM_007157	exon1	c.G364A	p.E122K	GAGGCCGAGGAGG	.	43	7	5	0	.	0	0	0	0	0
ZXDB	158586	hgsc.bcm.edu	37	X	57618870	57618870	+	Missense_Mutation	SNP	G	G	A	rs189164178		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZXDB-130	NM_007157	exon1	c.G389A	p.G130D	AGGGGGGCGAGAG	.	34	9	2	0	G|0.893;A|0.107	0	0	0	0	0
ZXDA	7789	hgsc.bcm.edu	37	X	57936462	57936462	+	Silent	SNP	G	G	A	rs60293829	bycluster;byfrequency;by1000genomes	TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	ZXDA-131	NM_007156	exon1	c.C393T	p.N131N	CGCGGGGTTCGCG	.	35	6	3	0	G|0.766;A|0.234	0	0	0	0	0
PIN4	5303	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	71417357	71417357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PIN4-130	NM_006223	exon4	c.T452C	p.M151T	TTATTATGGTCGA	.	259	105	240	0	.	0	0	0	0	0
NSDHL	50814	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	152031231	152031231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	NSDHL-130	NM_015922	exon5	c.T506C	p.I169T	AACCCATTGACTA	.	283	103	178	2	.	0	0	0	0	0
PCGF6	84108	hgsc.bcm.edu	37	10	105110740	105110741	+	In_Frame_Ins	INS	-	-	GGAGGC	rs113359610		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PCGF6-226	NM_032154	exon1	c.84_85insGCCTCC	p.P28delinsPPP	GGAGACAGGAGGC	.	26	11	6	2	-|0.590;GGAGGC|0.410	0	0	0	0	0
CHD8	57680	hgsc.bcm.edu;bcgsc.ca	37	14	21863156	21863157	+	Frame_Shift_Ins	INS	-	-	CTCTATCTTCATTTGTTCT	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	CHD8-277	NM_001170629	exon29	c.5305_5306insAGAACAAATGAAGATAGAG	p.A1769fs	CTGCAGCCTCTAT	.	45	4	69	0	.	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699367	26699368	+	Frame_Shift_Ins	INS	-	-	C	rs34421136		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_015077	exon2	c.313_314insC	p.A105fs	GCTGCTGCGGCCG	.	14	14	0	0	-|0.009;C|0.991	0	0	0	0	0
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	MCC-69	NM_001085377	exon1	c.64_65insGGC	p.S22delinsGS	TGCCGCTGCCGCC	.	44	11	9	0	.	0	0	0	0	0
FUCA2	2519	hgsc.bcm.edu	37	6	143832707	143832708	+	In_Frame_Ins	INS	-	-	GCAGCA	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	FUCA2-91	NM_032020	exon1	c.65_66insTGCTGC	p.P22delinsLLP	GGCGGCGGCAGCA	.	64	43	6	0	.	0	0	0	0	0
AVL9	23080	broad.mit.edu	37	7	32535342	32535343	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	AVL9-90	NM_015060	exon1	c.21_22insG	p.G7fs	GAGAGGCGGGGAT	.	281	7	79	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	PODXL-136	NM_005397	exon1	c.90_91insGTCGCC	p.P30delinsPSP	CTGGGAGGGCGAC	.	86	0	5	0	.	0	0	0	0	0
RBMXL3	139804	hgsc.bcm.edu	37	X	114425192	114425193	+	In_Frame_Ins	INS	-	-	CCCAACGCCCACAGCGGAGGCCGCTCG	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	.	NM_001145346	exon1	c.1188_1189insCCCAACGCCCACAGCGGAGGCCGCTCG	p.S396delinsSPNAHSGGRS	CCGCTCGCCCGAC	.	219	0	49	0	.	0	0	0	0	0
UVRAG	7405	hgsc.bcm.edu	37	11	75526481	75526482	+	Missense_Mutation	DNP	CC	CC	AG	novel		TCGA-OR-A5LF-01A-11D-A30A-10	TCGA-OR-A5LF-10A-01D-A30A-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	2cf21c74-97c0-46f3-8e1a-197f9737b5b5	bcf5a948-3260-455b-b930-5cec0d656728	.	UVRAG-229	NM_003369	exon1	c.C30G	p.P10Q	GGGCCCCGTCCCC	.	8	0	0	0	C|0.821;G|0.179	0	0	0	0	0