Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PADI2	11240	bcgsc.ca	37	1	17405809	17405809	+	Silent	SNP	G	G	A	rs2057096	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PADI2-208	NM_007365	exon11	c.C1260T	p.N420N	CTTGCCGTTCACG	.	105	6	113	1	G|0.520;A|0.480	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	8	8	0	0	G|0.061;T|0.939	0	0	0	0	0
EVA1B	55194	hgsc.bcm.edu	37	1	36788122	36788122	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_018166	exon3	c.C272T	p.P91L	TCGTCGGGGCCCA	.	20	20	2	0	.	10	1	9	0	0
HRNR	388697	bcgsc.ca	37	1	152192555	152192555	+	Missense_Mutation	SNP	T	T	C	rs41266134	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HRNR-93	NM_001009931	exon3	c.A1550G	p.Y517C	TGACCATAGCTGG	.	281	12	359	3	T|0.836;C|0.164	0	0	0	0	0
ADAMTS4	9507	bcgsc.ca	37	1	161160928	161160928	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ADAMTS4-230	NM_005099	exon9	c.A2514G	p.X838X	GTGAGGTTATTTC	.	43	4	32	0	.	0	0	0	0	0
LAMC1	3915	bcgsc.ca	37	1	183072590	183072590	+	Silent	SNP	T	T	C	rs2296288	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	LAMC1-252	NM_002293	exon2	c.T546C	p.C182C	TTCCTGTGAGAAC	.	267	9	355	3	T|0.486;C|0.514	7	7	0	0	0
CR1	1378	bcgsc.ca	37	1	207787796	207787796	+	Missense_Mutation	SNP	T	T	C	rs61822976		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CR1-93	NM_000651	exon40	c.T6623C	p.M2208T	CTGGAATGAAAGC	.	201	12	283	2	.	0	0	0	0	0
OR2L3	391192	ucsc.edu	37	1	248224578	248224578	+	Missense_Mutation	SNP	T	T	C	rs60743763	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OR2L3-68	NM_001004687	exon1	c.T595C	p.F199L	ACAGTGTTTTTGA	.	107	23	235	9	T|0.975;C|0.025	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	136	5	154	1	.	3	3	0	0	0
TYSND1	219743	bcgsc.ca	37	10	71906150	71906150	+	Missense_Mutation	SNP	T	T	C	rs4746970	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	TYSND1-135	NM_173555	exon1	c.A193G	p.T65A	CCGCGGTCAGGAC	.	36	33	9	1	T|0.585;C|0.415	2	0	2	0	0
ADAMTS14	140766	ucsc.edu	37	10	72498690	72498690	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ADAMTS14-232	NM_139155	exon11	c.T1701A	p.C567X	GTCATGTTCGCGG	.	42	4	72	1	.	0	0	0	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	8	8	0	0	T|0.623;G|0.377	1	0	1	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135015263	135015263	+	Missense_Mutation	SNP	C	C	T	rs199987564		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	KNDC1-229	NM_152643	exon17	c.C3248T	p.P1083L	CCGGCCCAGCCGG	.	66	9	6	0	.	9	9	0	0	0
RASSF7	8045	broad.mit.edu;ucsc.edu	37	11	562525	562525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	RASSF7-91	NM_001143994	exon3	c.G571A	p.A191T	GGACAGGCACGCC	.	46	5	20	0	.	4	4	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	10	10	0	0	C|0.602;T|0.398	0	0	0	0	0
OR51D1	390038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4661767	4661767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OR51D1-68	NM_001004751	exon1	c.G747T	p.K249N	ACTCAAGGCTTTC	.	80	69	99	0	.	0	0	0	0	0
PTPMT1	114971	hgsc.bcm.edu	37	11	47587369	47587369	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PTPMT1-23	NM_001143984	exon1	c.C195T	p.P65P	GGAGCCCGGGCCC	.	35	34	1	0	.	2	1	1	0	0
OR5D18	219438	bcgsc.ca	37	11	55587212	55587212	+	Missense_Mutation	SNP	A	A	G	rs7948629	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OR5D18-71	NM_001001952	exon1	c.A107G	p.Y36C	CCATCTACAATGT	.	147	6	153	1	A|0.964;G|0.036	0	0	0	0	0
TRIM49	57093	ucsc.edu;bcgsc.ca	37	11	89531780	89531780	+	Missense_Mutation	SNP	G	G	C	rs71240006		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	TRIM49-84	NM_020358	exon8	c.C877G	p.H293D	CTTCATGATGCAG	.	31	13	61	2	G|0.500;C|0.500	0	0	0	0	0
SLC37A2	219855	bcgsc.ca	37	11	124951752	124951752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SLC37A2-92	NM_001145290	exon9	c.C835T	p.P279S	AAGGGGCCATGCG	.	94	5	109	0	.	2	2	0	0	0
KLRB1	3820	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	9751229	9751229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	KLRB1-90	NM_002258	exon4	c.T280A	p.C94S	TTGGGCAGTTTAA	.	152	11	97	0	.	5	5	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	132	9	48	1	.	252	251	1	0	0
PABPC3	5042	broad.mit.edu	37	13	25671714	25671714	+	Missense_Mutation	SNP	A	A	G	rs61739066	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PABPC3-72	NM_030979	exon1	c.A1378G	p.M460V	AGTACTATGAGAC	.	117	4	141	0	A|0.996;G|0.004	0	0	0	0	0
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EBPL-90	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA	.	116	5	127	1	.	74	74	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	6	6	0	0	C|0.372;T|0.628	3	0	3	0	0
CDH24	64403	bcgsc.ca	37	14	23518918	23518918	+	Silent	SNP	T	T	C	rs11623976	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CDH24-90	NM_022478	exon11	c.A1629G	p.R543R	TTCATCTCTGTCC	.	83	5	75	0	T|0.841;C|0.159	0	0	0	0	0
UNC79	57578	bcgsc.ca	37	14	94152959	94152959	+	Silent	SNP	C	C	T	rs76973270	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_020818	exon44	c.C6447T	p.N2149N	CATCAACGAAGTG	.	127	8	204	0	C|0.972;T|0.028	0	0	0	0	0
LIPC	3990	bcgsc.ca	37	15	58834741	58834741	+	Silent	SNP	G	G	T	rs690	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	LIPC-91	NM_000236	exon4	c.G465T	p.V155V	ATCTGTGCAACTC	.	187	7	232	2	G|0.489;T|0.511	0	0	0	0	0
GLIS2	84662	broad.mit.edu	37	16	4386949	4386949	+	Silent	SNP	A	A	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	GLIS2-90	NM_032575	exon6	c.A999C	p.P333P	GCGCCCACCCCCC	.	119	24	31	1	.	19	12	7	0	0
KRTAP4-11	653240	hgsc.bcm.edu	37	17	39274238	39274238	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_033059	exon1	c.T330C	p.C110C	GGGGCGACAGCAG	.	104	7	31	0	.	0	0	0	0	0
KRTAP4-11	653240	broad.mit.edu;ucsc.edu	37	17	39274291	39274291	+	Missense_Mutation	SNP	T	T	C	rs200214744		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_033059	exon1	c.A277G	p.M93V	AGCACATAGACTG	.	84	12	32	1	.	0	0	0	0	0
SP6	80320	hgsc.bcm.edu	37	17	45925222	45925222	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SP6-91	NM_001258248	exon2	c.T574G	p.L192V	CTTCCAAGGCCTT	.	13	9	2	0	.	2	0	2	0	0
SP2	6668	broad.mit.edu	37	17	45994401	45994401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SP2-90	NM_003110	exon3	c.C964T	p.R322W	GCTCTGCGGGTGG	.	66	4	56	1	.	2	2	0	0	0
FADS6	283985	ucsc.edu	37	17	72889685	72889685	+	Silent	SNP	G	G	A	rs2683274	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	FADS6-22	NM_178128	exon1	c.C9T	p.P3P	CTCCGTGGGTTCC	.	102	31	33	3	G|0.500;A|0.500	0	0	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	AATK-933	NM_001080395	exon11	c.G1621A	p.A541T	GGCCGGCGGCGGG	.	10	10	0	0	C|0.850;T|0.150	0	0	0	0	0
VAPA	9218	broad.mit.edu;bcgsc.ca	37	18	9914291	9914291	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	VAPA-90	NM_003574	exon1	c.A38G	p.Q13R	ACGAGCAGATCCT	.	86	6	47	0	.	92	91	1	0	0
GNAL	2774	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	11752854	11752854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	GNAL-228	NM_182978	exon2	c.G379A	p.A127T	GCAGGGGCTGGTG	.	112	86	94	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9063253	9063253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MUC16-566	NM_024690	exon3	c.A24193G	p.S8065G	CAGAACTGGAGGT	.	165	113	245	0	.	0	0	0	0	0
ISYNA1	51477	bcgsc.ca	37	19	18546678	18546678	+	Silent	SNP	T	T	C	rs2303697	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ISYNA1-92	NM_016368	exon8	c.A1029G	p.L343L	CGCCGATAGGTTC	.	183	7	164	0	T|0.535;C|0.465	93	93	0	0	0
MAG	4099	bcgsc.ca	37	19	35786868	35786868	+	Silent	SNP	C	C	T	rs2301600	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MAG-947	NM_080600	exon4	c.C399T	p.S133S	GCACAGCGTCCTG	.	73	5	86	0	C|0.780;T|0.220	0	0	0	0	0
SOGA1	140710	hgsc.bcm.edu	37	20	35491180	35491180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_080627	exon1	c.C568T	p.R190C	GCAAGCGGCTGCT	.	20	8	0	0	.	2	1	1	0	0
RUNX1	861	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	36259202	36259202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	RUNX1-5146	NM_001754	exon4	c.T289C	p.F97L	AGAGGAAGTTGGG	.	104	23	76	0	.	0	0	0	0	0
TTC28	23331	bcgsc.ca	37	22	28378472	28378472	+	Silent	SNP	A	A	G	rs5762430	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_001145418	exon23	c.T7183C	p.L2395L	AATTCAACAGACT	.	91	5	94	0	A|0.754;G|0.246	1	1	0	0	0
LIMK2	3985	broad.mit.edu	37	22	31674324	31674324	+	Missense_Mutation	SNP	C	C	G	rs149034313	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	LIMK2-548	NM_005569	exon16	c.C1814G	p.S605C	CCCTCTCCCTGTA	.	52	3	66	0	C|0.998;G|0.002	3	3	0	0	0
DESI1	27351	bcgsc.ca	37	22	41997128	41997128	+	Silent	SNP	G	G	T	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_015704	exon6	c.C480A	p.S160S	GCCCACGGAGCTC	.	111	6	160	0	.	35	35	0	0	0
CELSR1	9620	ucsc.edu;bcgsc.ca	37	22	46760481	46760481	+	Missense_Mutation	SNP	C	C	G	rs9615351	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CELSR1-525	NM_014246	exon33	c.G8707C	p.E2903Q	GGTACTCTCCACG	.	52	47	12	0	C|0.700;G|0.300	1	0	1	0	0
RBM6	10180	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50005492	50005492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	RBM6-280	NM_005777	exon3	c.C634T	p.R212C	CAGTCCCGTTCTG	.	77	17	123	0	.	9	5	4	0	0
HLTF	6596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148763873	148763873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HLTF-659	NM_139048	exon18	c.T2066C	p.I689T	CTTCCAATAGTGG	.	92	65	122	0	.	0	0	0	0	0
EIF2B5	8893	broad.mit.edu;bcgsc.ca	37	3	183853220	183853220	+	Missense_Mutation	SNP	C	C	T	rs113994041	alternate_allele	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EIF2B5-95	NM_003907	exon1	c.C47T	p.A16V	GTCGGGCTAACAA	.	95	5	50	0	.	9	7	2	0	0
MUC4	4585	bcgsc.ca	37	3	195507226	195507226	+	Missense_Mutation	SNP	A	A	G	rs201269328		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MUC4-90	NM_018406	exon2	c.T11225C	p.V3742A	GGGGTGACGTGAC	.	240	19	286	7	A|0.001;G|0.999	0	0	0	0	0
FAM157A	728262	bcgsc.ca	37	3	197880133	197880133	+	Missense_Mutation	SNP	A	A	G	rs3843727		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_001145248	exon2	c.A212G	p.Q71R	ACTGGCAGCAGCA	.	242	26	493	9	.	0	0	0	0	0
CRIPAK	285464	ucsc.edu;bcgsc.ca	37	4	1388324	1388324	+	Missense_Mutation	SNP	A	A	C	rs74377230	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CRIPAK-90	NM_175918	exon1	c.A25C	p.N9H	TGTGCCAATGTGG	.	136	23	134	3	A|0.939;C|0.061	1	1	0	0	0
HGFAC	3083	bcgsc.ca	37	4	3449886	3449886	+	Silent	SNP	G	G	A	rs28468427	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HGFAC-514	NM_001528	exon13	c.G1668A	p.E556E	GCGGGAGGCCCTG	.	167	7	49	0	G|0.745;A|0.255	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537294	88537294	+	Silent	SNP	T	T	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	DSPP-90	NM_014208	exon5	c.T3480C	p.S1160S	CAGCAGTGACAGC	.	519	120	994	8	.	0	0	0	0	0
C4orf33	132321	bcgsc.ca	37	4	130032886	130032886	+	Silent	SNP	T	T	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	C4orf33-69	NM_001099783	exon6	c.T540A	p.L180L	ACTGCTTGGAGAA	.	154	6	161	0	.	15	15	0	0	0
EDNRA	1909	bcgsc.ca	37	4	148461037	148461037	+	Silent	SNP	T	T	C	rs5333	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EDNRA-586	NM_001957	exon6	c.T969C	p.H323H	TCTTCATTTAAGC	.	78	5	82	0	T|0.642;C|0.358	1	1	0	0	0
EDNRA	1909	ucsc.edu;bcgsc.ca	37	4	148461073	148461073	+	Silent	SNP	G	G	A	rs5334	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EDNRA-586	NM_001957	exon6	c.G1005A	p.E335E	TAACGAGATGGAC	.	61	6	55	0	G|0.644;A|0.356	1	1	0	0	0
MRPS30	10884	broad.mit.edu	37	5	44809179	44809179	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MRPS30-227	NM_016640	exon1	c.A115C	p.T39P	GCGGCGACCCCCG	.	175	42	23	2	.	9	8	1	0	0
PCDHB10	56126	hgsc.bcm.edu	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	46	19	0	0	.	15	15	0	0	0
HIST1H3D	8351	broad.mit.edu;bcgsc.ca	37	6	26197478	26197478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HIST1H3D-90	NM_003530	exon2	c.A1G	p.M1V	GAGCCATTGCGAA	.	274	13	301	0	.	1	1	0	0	0
PNPLA1	285848	ucsc.edu;bcgsc.ca	37	6	36260858	36260858	+	Silent	SNP	C	C	T	rs2239795	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PNPLA1-137	NM_001145717	exon3	c.C459T	p.F153F	CTGCTTCGTCCCG	.	64	6	101	1	C|0.568;T|0.432	0	0	0	0	0
SH3BGRL2	83699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80406276	80406276	+	Silent	SNP	A	A	G	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	SH3BGRL2-226	NM_031469	exon3	c.A306G	p.A102A	GTTGGCATCAAAG	.	55	14	61	0	.	0	0	0	0	0
EIF3B	8662	hgsc.bcm.edu	37	7	2394991	2394991	+	Silent	SNP	C	C	T	rs11551167	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	EIF3B-68	NM_001037283	exon1	c.C435T	p.N145N	GGAGAACGGCGAC	.	4	4	0	0	C|0.787;T|0.213	12	0	12	0	0
KIAA0087	9808	broad.mit.edu;bcgsc.ca	37	7	26578105	26578105	+	RNA	SNP	A	A	G	rs17153822	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	.	.	.	.	GTCCCTATCAGTG	.	50	4	68	0	A|0.787;G|0.213	1	1	0	0	0
CLDN23	137075	hgsc.bcm.edu	37	8	8560536	8560536	+	Missense_Mutation	SNP	G	G	A	rs12548737	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	.	NM_194284	exon1	c.G628A	p.V210M	ATCCAAGTGGAGT	.	10	5	0	0	G|0.907;A|0.093	0	0	0	0	0
OPRK1	4986	hgsc.bcm.edu	37	8	54163562	54163562	+	Silent	SNP	C	C	A	rs1051660	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	OPRK1-70	NM_000912	exon2	c.G36T	p.P12P	AGGGCCCGGCTCC	.	14	8	0	0	C|0.895;A|0.105	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	144992388	144992388	+	Silent	SNP	G	G	A	rs75833626	byfrequency	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PLEC-141	NM_201380	exon32	c.C12012T	p.D4004D	GCCGTCGTCACGA	.	18	12	0	0	G|0.965;A|0.035	49	21	27	1	0
HSF1	3297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145535011	145535011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	HSF1-46	NM_005526	exon6	c.T569A	p.I190N	AGCTCATTCAGTT	.	79	27	50	0	.	2	1	1	0	0
TMEM2	23670	broad.mit.edu;ucsc.edu	37	9	74359971	74359971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	TMEM2-92	NM_001135820	exon4	c.C997T	p.R333W	CCAACCGTTCCTG	.	60	7	72	1	.	0	0	0	0	0
PPAPDC3	84814	bcgsc.ca	37	9	134165546	134165546	+	Silent	SNP	C	C	T	rs141024100	byfrequency;alternate_allele	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PPAPDC3-153	NM_032728	exon1	c.C162T	p.D54D	TGGTGACGGGGCC	.	80	5	40	0	C|0.999;A|0.001	7	7	0	0	0
ABCA2	20	broad.mit.edu	37	9	139907251	139907251	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	ABCA2-90	NM_212533	exon31	c.T5084G	p.V1695G	GTGACCACCCGCA	.	174	50	93	7	.	7	7	0	0	0
CDKL5	6792	ucsc.edu;bcgsc.ca	37	X	18622933	18622933	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	CDKL5-838	NM_003159	exon12	c.G1889A	p.S630N	GCTTGAGCATAGG	.	292	120	214	3	.	0	0	0	0	0
MAOA	4128	broad.mit.edu	37	X	43595521	43595523	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MAOA-194	NM_000240	exon10	c.1100_1102del	p.367_368del	ATAAGGAAATAAG	.	259	7	193	0	.	0	0	0	0	0
MAOA	4128	hgsc.bcm.edu	37	X	43595521	43595530	+	Frame_Shift_Del	DEL	AAATAAGGTA	AAATAAGGTA	-	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	AAATAAGGTA	AAATAAGGTA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MAOA-194	NM_000240	exon10	c.1100_1106del	p.367_369del	ATAAGGAAATAAG	.	259	0	193	0	.	0	0	0	0	0
MAOA	4128	broad.mit.edu;bcgsc.ca	37	X	43595525	43595530	+	In_Frame_Del	DEL	AAGGTA	AAGGTA	-	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MAOA-194	NM_000240	exon10	c.1104_1106del	p.368_369del	GGAAATAAGGTAA	.	244	7	185	0	.	0	0	0	0	0
MN1	4330	broad.mit.edu	37	22	28194933	28194934	+	In_Frame_Ins	INS	-	-	TGC	rs75719175		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	MN1-993	NM_002430	exon1	c.1599_1600insGCA	p.Q533delinsQQ	CTGCTGTTGCTGC	.	62	41	6	0	.	0	0	0	0	0
PRSS48	345062	bcgsc.ca	37	4	152201018	152201019	+	Frame_Shift_Ins	INS	-	-	CAGGT	rs148861921	bycluster;by1000genomes	TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	PRSS48-67	NM_183375	exon2	c.123_124insCAGGT	p.W41fs	GCCTTGGCAGGTC	.	109	3	125	0	.	0	0	0	0	0
C16orf3	750	bcgsc.ca	37	16	90095596	90095597	+	Missense_Mutation	DNP	AT	AT	GC	novel		TCGA-OR-A5LR-01A-11D-A29I-10	TCGA-OR-A5LR-10A-01D-A29L-10	AT	AT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	a4944d75-a6da-45bb-b5b9-3fa3355b0ead	c2a8460f-138e-44eb-a933-a5cd6ca34d8b	.	C16orf3-90	NM_001214	exon1	c.A154G	p.I52A	AGGCTATGGGGCA	.	110	0	27	0	T|0.361;C|0.639	0	0	0	0	0