Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCC	9696	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	17274918	17274918	+	Silent	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CROCC-137	NM_014675	exon18	c.T2607G	p.R869R	GGCCCGTGAGAAG	.	85	46	18	1	.	4	0	4	0	0
AKR7L	246181	hgsc.bcm.edu	37	1	19600479	19600501	+	RNA	DEL	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	AKR7L-90	.	.	.	.	CGTGACTGCGGCG	.	85	18	55	0	.	0	0	0	0	0
AKR7A3	22977	hgsc.bcm.edu	37	1	19615114	19615136	+	Frame_Shift_Del	DEL	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	AKR7A3-90	NM_012067	exon1	c.68_90del	p.23_30del	CGTGACTGCGGCG	.	186	22	43	1	.	0	0	0	0	0
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22304887	22304887	+	Silent	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CELA3B-91	NM_007352	exon2	c.T69C	p.S23S	TTCCTCTCGCCCT	.	118	72	169	0	.	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	9	9	0	0	G|0.061;T|0.939	0	0	0	0	0
C1orf141	400757	ucsc.edu;bcgsc.ca	37	1	67569025	67569025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	C1orf141-91	NM_001276352	exon7	c.A455G	p.H152R	TGTCTATGCTGTG	.	24	4	55	0	.	0	0	0	0	0
KIAA1324	57535	bcgsc.ca	37	1	109737063	109737063	+	Silent	SNP	C	C	T	rs2359246	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KIAA1324-157	NM_020775	exon15	c.C1968T	p.N656N	CTACAACGATTGC	.	86	5	104	0	C|0.338;T|0.662	0	0	0	0	0
DCST1	149095	hgsc.bcm.edu	37	1	155020586	155020586	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	DCST1-92	NM_152494	exon16	c.A1809G	p.A603A	AAGAGCAGCCTTC	.	66	4	84	0	.	0	0	0	0	0
CFH	3075	broad.mit.edu	37	1	196706701	196706701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CFH-566	NM_000186	exon17	c.G2693T	p.S898I	AATTGAGTTATAC	.	113	3	111	0	.	11	11	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197071136	197071136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ASPM-615	NM_018136	exon18	c.G7245C	p.Q2415H	CCTACTCTGAATA	.	46	28	74	0	.	1	0	1	0	0
CTSE	1510	bcgsc.ca	37	1	206327546	206327546	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CTSE-91	NM_001910	exon6	c.G735T	p.L245L	GAGCCTGAATTGG	.	56	4	41	0	.	0	0	0	0	0
OR2T27	403239	bcgsc.ca	37	1	248813749	248813749	+	Missense_Mutation	SNP	G	G	A	rs76164485		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	OR2T27-47	NM_001001824	exon1	c.C437T	p.A146V	GCTGCCGCCACAA	.	67	5	295	3	.	0	0	0	0	0
PROSER2	254427	hgsc.bcm.edu	37	10	11912144	11912144	+	Silent	SNP	C	C	T	rs17851505	byfrequency;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_153256	exon4	c.C1047T	p.H349H	TGCGCACGAGGCC	.	15	15	0	0	C|0.932;T|0.068	0	0	0	0	0
NCOA4	8031	broad.mit.edu	37	10	51585100	51585100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NCOA4-1042	NM_001145261	exon9	c.T1247G	p.V416G	GTAAGGTAGAGGA	.	179	18	134	11	.	68	66	2	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55943228	55943228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PCDH15-193	NM_001142763	exon14	c.G1581A	p.M527I	AGGTCTCATGTCT	.	185	73	127	0	.	0	0	0	0	0
LZTS2	84445	broad.mit.edu	37	10	102766682	102766682	+	Silent	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	LZTS2-155	NM_032429	exon5	c.T1767G	p.G589G	GCGGGGTGAGGAG	.	209	36	73	9	.	26	19	7	0	0
NEURL	9148	hgsc.bcm.edu	37	10	105344756	105344756	+	Silent	SNP	T	T	C	rs2236209	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NEURL-226	NM_004210	exon4	c.T1113C	p.P371P	CCTGCCTTTCAGC	.	5	5	0	0	T|0.455;C|0.545	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu	37	10	112404302	112404302	+	Silent	SNP	G	G	A	rs35141404	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_001134363	exon1	c.G90A	p.R30R	TGCCCGGGCGTCC	.	31	23	3	0	G|0.808;A|0.192	0	0	0	0	0
CTBP2	1488	bcgsc.ca	37	10	126714966	126714966	+	Missense_Mutation	SNP	A	A	G	rs3012075	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CTBP2-90	NM_022802	exon1	c.T1363C	p.Y455H	GGGGGTACGTGGG	.	72	5	30	0	A|0.547;G|0.453	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219036	134219036	+	Silent	SNP	G	G	A	rs11817589	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PWWP2B-90	NM_001098637	exon2	c.G1032A	p.E344E	CAGCGAGCACGAG	.	17	9	0	0	G|0.909;A|0.091	28	28	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	24	13	1	0	C|0.860;T|0.140	29	29	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012430	135012430	+	Silent	SNP	T	T	C	rs3008389	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KNDC1-229	NM_152643	exon14	c.T2418C	p.V806V	TGGAGTTGCTTCC	.	9	5	4	0	T|0.470;C|0.530	4	1	3	0	0
OR51Q1	390061	bcgsc.ca	37	11	5443442	5443442	+	Silent	SNP	G	G	C	rs2736590	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	OR51Q1-69	NM_001004757	exon1	c.G12C	p.V4V	CCAGGTGACTAAC	.	89	4	127	1	G|0.569;C|0.431	0	0	0	0	0
DCHS1	8642	hgsc.bcm.edu	37	11	6651810	6651810	+	Silent	SNP	A	A	G	rs2659872	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	DCHS1-73	NM_003737	exon10	c.T4215C	p.L1405L	TACCGTAAGCGCG	.	6	4	0	0	A|0.491;G|0.509	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810239	65810239	+	Silent	SNP	G	G	A	rs78578425		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	GAL3ST3-91	NM_033036	exon3	c.C1035T	p.A345A	CTGCGCGGCAGGC	.	5	5	0	0	G|0.867;A|0.133	0	0	0	0	0
FADD	8772	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70049689	70049689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	FADD-660	NM_003824	exon1	c.G124C	p.G42R	CAGAGCGGCCTAG	.	121	78	111	1	.	9	0	9	0	0
MMP27	64066	broad.mit.edu	37	11	102575318	102575318	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	MMP27-229	NM_022122	exon2	c.C291A	p.G97G	ATACTGGCCCACA	.	73	3	82	0	.	0	0	0	0	0
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118986791	118986791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	C2CD2L-68	NM_014807	exon14	c.G1949T	p.R650L	TCTTCCGCCGGAG	.	53	4	81	0	.	7	7	0	0	0
CCDC15	80071	ucsc.edu;bcgsc.ca	37	11	124863136	124863136	+	Silent	SNP	C	C	A	rs7951202	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CCDC15-69	NM_025004	exon11	c.C2211A	p.P737P	AGTGCCCTTGGTA	.	39	4	62	0	C|0.718;A|0.282	0	0	0	0	0
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	32136338	32136338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_018169	exon4	c.G2449T	p.D817Y	AAAGTTGATGTTA	.	98	5	85	0	.	5	5	0	0	0
ITGB7	3695	hgsc.bcm.edu	37	12	53591607	53591607	+	Silent	SNP	C	C	T	rs181619182	by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ITGB7-231	NM_000889	exon4	c.G330A	p.P110P	GCTGAGCGGCTGG	.	7	7	1	0	C|0.999;T|0.001	0	0	0	0	0
ATF7	11016	broad.mit.edu	37	12	53910930	53910930	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ATF7-455	NM_006856	exon12	c.G1443A	p.A481A	TCTGCCCGCAGAC	.	48	3	41	0	.	1	1	0	0	0
CPSF6	11052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	69646896	69646896	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CPSF6-226	NM_007007	exon3	c.336delA	p.I112fs	GGAGATAAAATTT	.	160	77	164	0	.	0	0	0	0	0
CPSF6	11052	bcgsc.ca;mdanderson.org	37	12	69646898	69646898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CPSF6-226	NM_007007	exon3	c.A338C	p.K113T	AGATAAAATTTTT	.	157	77	165	1	.	14	14	0	0	0
CPSF6	11052	hgsc.bcm.edu	37	12	69646903	69646903	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CPSF6-226	NM_007007	exon3	c.343delT	p.F115fs	AAATTTTTTGAAA	.	158	0	159	0	.	0	0	0	0	0
TPTE2	93492	broad.mit.edu	37	13	20025336	20025336	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	TPTE2-92	NM_199254	exon12	c.T771C	p.H257H	GTTTCGATGTTTC	.	74	7	95	1	.	0	0	0	0	0
PCCA	5095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100925450	100925450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PCCA-227	NM_001178004	exon12	c.C915A	p.S305R	ATGTAGCATTTTT	.	39	20	61	0	.	0	0	0	0	0
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917292	26917292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NOVA1-229	NM_002515	exon5	c.G1397A	p.G466D	CTTGTGCCAGGTA	.	274	116	234	0	.	5	1	4	0	0
NPAS3	64067	bcgsc.ca	37	14	34270138	34270138	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NPAS3-93	NM_001164749	exon12	c.C2625T	p.H875H	CCACCACGTGCAC	.	200	81	122	3	.	1	0	1	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_018139	exon1	c.G1185C	p.A395A	GTCCTCCGCGCGA	.	10	10	0	0	C|0.569;G|0.431	0	0	0	0	0
SPTB	6710	bcgsc.ca	37	14	65260227	65260227	+	Silent	SNP	T	T	G	rs229591	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SPTB-100	NM_000347	exon13	c.A2154C	p.I718I	CTCCTTTATGCGG	.	116	6	104	0	T|0.558;G|0.442	1	1	0	0	0
SERPINA3	12	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	95085645	95085645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SERPINA3-653	NM_001085	exon3	c.T757C	p.Y253H	ATACCTTACTTCC	.	351	29	258	0	.	77	75	2	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	HHIPL1-70	NM_001127258	exon9	c.T2075C	p.V692A	TGTTCGTGGGCGG	.	20	20	0	0	T|0.478;C|0.522	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	EXOC3L4-23	NM_001077594	exon2	c.A669G	p.E223E	GGAGGAAGCCCAC	.	8	4	0	0	A|0.486;G|0.514	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	5	4	0	0	G|0.327;T|0.673	79	52	27	0	0
GABRG3	2567	bcgsc.ca	37	15	27772676	27772676	+	Silent	SNP	C	C	T	rs140679	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_033223	exon8	c.C963T	p.T321T	TGTGACCGTGTGC	.	154	7	243	2	C|0.473;T|0.527	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369441	65369441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_001101362	exon1	c.T288G	p.F96L	TCGCTTTCTGGAG	.	18	15	5	0	.	0	0	0	0	0
FAM219B	57184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75195092	75195092	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_020447	exon5	c.G465A	p.Q155Q	CCCATCCTGAAGC	.	107	7	151	0	.	48	46	2	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79092603	79092603	+	Silent	SNP	G	G	A	rs6495329	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ADAMTS7-226	NM_014272	exon2	c.C387T	p.H129H	AAGCAGGTGGCAG	.	5	5	0	0	G|0.616;A|0.384	2	0	2	0	0
FANCI	55215	bcgsc.ca	37	15	89804043	89804043	+	Missense_Mutation	SNP	C	C	T	rs17803620	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	FANCI-92	NM_001113378	exon4	c.C257T	p.A86V	AAATAGCGTCTGA	.	115	5	105	1	C|0.726;T|0.274	2	2	0	0	0
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	102359139	102359139	+	Missense_Mutation	SNP	C	C	A	rs149793188	byfrequency;alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	OR4F15-68	NM_001001674	exon1	c.C750A	p.F250L	CTTGTTCTTTGGG	.	82	6	139	0	C|1.000;T|0.000	0	0	0	0	0
WFIKKN1	117166	broad.mit.edu	37	16	683832	683832	+	Silent	SNP	C	C	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	WFIKKN1-90	NM_053284	exon2	c.C1422A	p.G474G	CTTGGGCACCAAG	.	316	10	153	1	.	1	1	0	0	0
NTN3	4917	broad.mit.edu	37	16	2521965	2521965	+	Missense_Mutation	SNP	C	C	A	rs201589632		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NTN3-90	NM_006181	exon1	c.C263A	p.A88D	GCACGGCCAGCCC	.	30	4	12	0	.	0	0	0	0	0
ZNF764	92595	ucsc.edu	37	16	30567377	30567377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF764-91	NM_033410	exon3	c.A365G	p.E122G	GGCTTCTCCAGGG	.	33	4	28	0	.	22	22	0	0	0
TGFB1I1	7041	broad.mit.edu	37	16	31488760	31488760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	TGFB1I1-90	NM_001042454	exon11	c.G1249T	p.V417L	CGCTGCGTGTCGG	.	252	7	41	0	.	14	14	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	11	11	0	0	T|0.035;G|0.004	0	0	0	0	0
ZFHX3	463	broad.mit.edu	37	16	72821594	72821602	+	In_Frame_Del	DEL	GCCGCCGCC	GCCGCCGCC	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZFHX3-72	NM_006885	exon10	c.10573_10581del	p.3525_3527del	GTACGAGCCGCCG	.	56	19	27	0	.	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ADAD2-68	NM_001145400	exon1	c.G131A	p.G44E	CCTGGGGGCCCGC	.	21	20	0	0	G|0.292;A|0.708	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZFPM1-90	NM_153813	exon10	c.1330_1331del	p.444_444del	AGAGCGGAGCCTC	.	23	16	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	23	0	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZFPM1-90	NM_153813	exon10	c.1335delT	p.P445fs	GGAGCCTCTGGCC	.	19	16	0	0	.	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZFPM1-90	NM_153813	exon10	c.1337_1339del	p.446_447del	AGCCTCTGGCCCA	.	17	16	0	0	.	0	0	0	0	0
RAP1GAP2	23108	bcgsc.ca	37	17	2929674	2929674	+	Silent	SNP	T	T	C	rs12941934	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	RAP1GAP2-1	NM_015085	exon21	c.T1896C	p.R632R	CGGCCGTGCCATC	.	184	7	209	3	T|0.420;C|0.580	0	0	0	0	0
PLD2	5338	broad.mit.edu	37	17	4711145	4711145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PLD2-291	NM_001243108	exon2	c.G78T	p.E26D	CGATGAGGTGGAC	.	75	4	74	0	.	0	0	0	0	0
FLII	2314	bcgsc.ca	37	17	18148485	18148485	+	Silent	SNP	G	G	A	rs7498	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	FLII-91	NM_002018	exon30	c.C3777T	p.H1259H	CCAGGCGTGGAAG	.	159	6	150	0	G|0.728;A|0.272	112	112	0	0	0
KRT34	3885	bcgsc.ca	37	17	39535859	39535859	+	Missense_Mutation	SNP	A	A	G	rs2239710	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KRT34-90	NM_021013	exon4	c.T839C	p.I280T	CGGTTAATTTCCA	.	147	7	163	1	A|0.261;G|0.739	0	0	0	0	0
SPATA32	124783	ucsc.edu;bcgsc.ca	37	17	43333125	43333125	+	Missense_Mutation	SNP	C	C	T	rs11651968	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_152343	exon4	c.G424A	p.V142M	CAGACACGTGGTT	.	47	5	94	1	C|0.650;G|0.000;T|0.350	0	0	0	0	0
SLC26A11	284129	broad.mit.edu;bcgsc.ca	37	17	78220405	78220405	+	Silent	SNP	G	G	T	rs137973400		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SLC26A11-90	NM_173626	exon13	c.G1251T	p.P417P	GGCCCCGCTGTTC	.	116	6	155	2	G|1.000;T|0.000	24	24	0	0	0
MOCOS	55034	hgsc.bcm.edu	37	18	33767568	33767568	+	Missense_Mutation	SNP	C	C	A	rs113873219		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	MOCOS-91	NM_017947	exon1	c.C66A	p.S22R	CCCGAGCGCACCG	.	14	14	0	0	C|0.943;A|0.057	18	0	18	0	0
DSEL	92126	broad.mit.edu	37	18	65180328	65180328	+	Silent	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	DSEL-157	NM_032160	exon2	c.A1548C	p.S516S	TGAGGGTGATGGA	.	46	7	76	0	.	2	2	0	0	0
ATP9B	374868	hgsc.bcm.edu	37	18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	rs4078115		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ATP9B-93	NM_198531	exon1	c.A115G	p.S39G	CGGCACAGCAGGT	.	6	6	0	0	A|0.693;G|0.307	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ABCA7-98	NM_019112	exon46	c.C6159T	p.G2053G	TGGAGGCCGCCTG	.	17	16	0	0	C|0.766;T|0.234	1	0	1	0	0
C19orf71	100128569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	3543552	3543552	+	Splice_Site	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_001135580	exon3	c.323-1G>C	.	ACCGCAGCCTACA	.	74	21	18	0	.	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF414-90	NM_032370	exon5	c.G705A	p.P235P	CGGGAACGGCAGG	.	34	24	1	0	C|0.788;T|0.212	7	2	5	0	0
KEAP1	9817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610253	10610253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KEAP1-637	NM_012289	exon2	c.C457G	p.L153V	CGTGGAGGACACA	.	487	104	277	1	.	52	50	2	0	0
SMARCA4	6597	hgsc.bcm.edu	37	19	11097222	11097222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SMARCA4-1523	NM_003072	exon4	c.C713G	p.P238R	CTGGCCCCGGCCC	.	31	9	0	0	.	8	8	0	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17311225	17311225	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	MYO9B-67	NM_001130065	exon25	c.G4362C	p.K1454N	GAAGAAGGGCCTG	.	235	64	122	0	.	0	0	0	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	MAP1S-90	NM_018174	exon5	c.C1232G	p.S411C	TGGCCTCTGTGTG	.	45	10	1	0	C|0.883;G|0.117	12	10	2	0	0
ZNF714	148206	hgsc.bcm.edu;broad.mit.edu	37	19	21300738	21300738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF714-67	NM_182515	exon5	c.T1268C	p.L423P	AGAAACTCTACAA	.	17	6	9	0	.	449	12	435	2	0
PRX	57716	ucsc.edu;bcgsc.ca	37	19	40903238	40903238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PRX-92	NM_181882	exon7	c.G1021A	p.G341S	CTGCACCCGGCAA	.	119	59	117	2	.	4	3	1	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ERCC2-848	NM_000400	exon10	c.G934A	p.D312N	CTTCGTCGGGCAG	.	25	12	0	0	C|0.804;T|0.196	13	10	3	0	0
PPFIA3	8541	broad.mit.edu	37	19	49641586	49641586	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PPFIA3-226	NM_003660	exon16	c.A1978C	p.T660P	TCCCTCACCACCT	.	62	9	48	2	.	6	6	0	0	0
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56243992	56243992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NLRP9-294	NM_176820	exon2	c.G1205A	p.G402E	CAAATTCCCTCTG	.	69	23	76	0	.	0	0	0	0	0
ZNF772	400720	bcgsc.ca	37	19	57985460	57985460	+	Missense_Mutation	SNP	T	T	A	rs2074059	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF772-90	NM_001024596	exon5	c.A652T	p.M218L	TCTCCATTGATTG	.	215	7	149	1	T|0.353;A|0.647	3	3	0	0	0
NCK2	8440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	106471685	106471685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NCK2-415	NM_001004720	exon2	c.G166A	p.V56M	AACTACGTGGAGC	.	146	110	209	2	.	14	4	10	0	0
STK39	27347	broad.mit.edu;bcgsc.ca	37	2	169023910	169023910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	STK39-546	NM_013233	exon3	c.T329A	p.I110N	GCTTGAATTTCTT	.	96	6	139	0	.	0	0	0	0	0
SP5	389058	hgsc.bcm.edu	37	2	171573185	171573185	+	Silent	SNP	G	G	T	rs1134626	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SP5-90	NM_001003845	exon2	c.G468T	p.P156P	GCTGCCGCCAGGC	.	4	4	0	0	G|0.766;T|0.234	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179427229	179427229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	TTN-636	NM_001267550	exon326	c.G83630A	p.R27877H	GTATTACGGGTCA	.	81	54	138	0	.	0	0	0	0	0
GPR55	9290	bcgsc.ca	37	2	231774844	231774844	+	Silent	SNP	G	G	A	rs2396777	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	GPR55-91	NM_005683	exon2	c.C834T	p.N278N	GTTGACGTTGGAG	.	142	5	185	1	G|0.690;N|0.000	0	0	0	0	0
SIRPA	140885	bcgsc.ca	37	20	1895984	1895984	+	Missense_Mutation	SNP	C	C	A	rs17855615	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SIRPA-227	NM_001040022	exon3	c.C319A	p.R107S	TCCATCCGCATCG	.	47	12	195	3	C|0.700;A|0.300	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	4	4	0	0	G|0.122;C|0.878	0	0	0	0	0
LRRN4	164312	hgsc.bcm.edu	37	20	6033033	6033033	+	Missense_Mutation	SNP	G	G	A	rs6107751	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	LRRN4-93	NM_152611	exon2	c.C413T	p.P138L	CACGGCGGCAGAG	.	4	4	0	0	G|0.864;A|0.136	0	0	0	0	0
PLCB1	23236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8782728	8782728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PLCB1-297	NM_182734	exon32	c.A3449T	p.Y1150F	TCTTGTCGGAAAC	.	93	23	91	1	.	0	0	0	0	0
CST1	1469	broad.mit.edu	37	20	23728528	23728528	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CST1-91	NM_001898	exon3	c.G351A	p.L117L	AGAGCACAACTGT	.	215	11	125	0	.	0	0	0	0	0
RBM39	9584	hgsc.bcm.edu;broad.mit.edu	37	20	34292408	34292408	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	RBM39-91	NM_184234	exon17	c.C1588A	p.R530R	TTCATCGTCTACT	.	95	5	70	0	.	130	130	0	0	0
KIAA1755	85449	hgsc.bcm.edu	37	20	36868106	36868106	+	Missense_Mutation	SNP	G	G	A	rs11699859	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KIAA1755-95	NM_001029864	exon4	c.C1571T	p.T524I	CCAGATGTTTTGG	.	17	7	4	0	G|0.994;A|0.006	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ACTR5-90	NM_024855	exon1	c.C18T	p.F6F	CGTGTTCCCGTTC	.	33	17	0	0	C|0.769;T|0.231	0	0	0	0	0
PRODH	5625	bcgsc.ca	37	22	18912678	18912678	+	Missense_Mutation	SNP	A	A	G	rs4819756	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PRODH-289	NM_016335	exon5	c.T553C	p.W185R	AGGCCCAGTGGGC	.	121	6	204	0	A|0.284;G|0.716	2	2	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28195386	28195386	+	Missense_Mutation	SNP	C	C	A	rs45589338	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	MN1-993	NM_002430	exon1	c.G1146T	p.Q382H	GCCCTGCTGGGGC	.	15	15	0	0	C|0.986;A|0.014	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NEFH-90	NM_021076	exon4	c.A1965T	p.P655P	GTCCCCAGAGAAG	.	209	60	316	0	A|0.500;T|0.500	3	3	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NEFH-90	NM_021076	exon4	c.1970_1975del	p.657_659del	CAGAGAAGGAAGA	.	213	22	336	0	.	0	0	0	0	0
TRIM71	131405	broad.mit.edu	37	3	32932887	32932887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	TRIM71-92	NM_001039111	exon4	c.G2191T	p.G731C	CCTGATGGTGTCT	.	95	4	177	1	.	0	0	0	0	0
ARHGEF3	50650	bcgsc.ca	37	3	56835761	56835761	+	Silent	SNP	G	G	A	rs3732508	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ARHGEF3-228	NM_019555	exon1	c.C66T	p.P22P	GGCCGGGGGTAGC	.	173	6	166	1	G|0.677;A|0.323	36	36	0	0	0
PXK	54899	bcgsc.ca	37	3	58382846	58382846	+	Silent	SNP	C	C	T	rs3191903	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PXK-334	NM_017771	exon10	c.C903T	p.C301C	CACTTGCCGGCTG	.	57	4	94	0	C|0.701;T|0.299	6	6	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	10	10	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	12	12	0	0	G|0.252;C|0.748	0	0	0	0	0
EEFSEC	60678	hgsc.bcm.edu	37	3	127872602	127872602	+	Silent	SNP	A	A	G	rs11719546	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	EEFSEC-91	NM_021937	exon1	c.A252G	p.P84P	CGAGCCACTGCTT	.	21	7	2	0	A|0.881;G|0.119	7	6	1	0	0
UBA5	79876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132387706	132387706	+	Silent	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	UBA5-226	NM_024818	exon4	c.T342C	p.N114N	TATGAATAGACTT	.	100	48	72	0	.	31	12	19	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CRIPAK-90	NM_175918	exon1	c.T675C	p.D225D	TGCCGATGCGGAG	.	21	17	9	0	C|1.000;|0.000	12	8	4	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	OTOP1-92	NM_177998	exon1	c.310_318del	p.104_106del	CAGCATCCACAGC	.	81	8	16	0	.	0	0	0	0	0
DRD5	1816	broad.mit.edu	37	4	9784478	9784478	+	Missense_Mutation	SNP	C	C	A	rs201762034		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	DRD5-91	NM_000798	exon1	c.C825A	p.S275R	GAGCAGCGCAGCC	.	93	6	42	1	.	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	4	4	0	0	G|0.794;C|0.206	1	0	1	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NMU-650	NM_006681	exon1	c.C56A	p.A19E	GGGGACGCCGCGG	.	24	13	0	0	G|0.970;T|0.030	0	0	0	0	0
FAM47E-STBD1	0	hgsc.bcm.edu;broad.mit.edu	37	4	77189842	77189842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_001242939	exon4	c.G590T	p.G197V	ACGCAGGCCAATG	.	86	5	61	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	DSPP-90	NM_014208	exon5	c.G3139A	p.D1047N	AGCAGCGATAGCA	.	932	40	606	8	.	0	0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126408693	126408693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	FAT4-108	NM_024582	exon16	c.G13010T	p.G4337V	TCGGTGGCCTTGA	.	102	3	85	1	.	0	0	0	0	0
INPP4B	8821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	143324112	143324112	+	Silent	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	INPP4B-228	NM_003866	exon8	c.C351T	p.V117V	ATCCTTGACATCA	.	157	45	114	1	.	8	2	6	0	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SNX18-226	NM_052870	exon1	c.T270C	p.P90P	CCTGCCTGTCGCG	.	4	4	0	0	G|0.979;C|0.003	1	0	1	0	0
ZNF474	133923	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121488085	121488085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF474-90	NM_207317	exon2	c.C400A	p.P134T	AGGAGGCCAGAAC	.	157	50	73	1	.	0	0	0	0	0
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	126113295	126113297	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	LMNB1-226	NM_005573	exon1	c.95_97del	p.32_33del	TCCAGGAGAAGGA	.	260	61	59	0	.	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_175873	exon1	c.G371C	p.R124P	TGGTCCGGGTGCC	.	8	8	0	0	G|0.980;C|0.020	0	0	0	0	0
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170640671	170640671	+	Silent	SNP	T	T	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	RANBP17-524	NM_022897	exon21	c.T2268A	p.V756V	TGCTGTTGAACGG	.	234	65	101	0	.	6	6	0	0	0
TMEM14B	81853	ucsc.edu	37	6	10756712	10756712	+	Silent	SNP	C	C	T	rs143087269	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	TMEM14B-90	NM_030969	exon6	c.C306T	p.A102A	GATGGCCGCCAAA	.	101	22	140	11	C|0.996;T|0.004	47	47	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KCNK17-227	NM_001135111	exon1	c.A61G	p.S21G	CGGTGCTGGGCAC	.	19	15	2	0	T|0.441;C|0.559	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PEX6-91	NM_000287	exon1	c.G399T	p.V133V	TCCGGGCACTGGG	.	8	7	0	0	C|0.673;A|0.327	2	0	2	0	0
HOXA9	3205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27203337	27203337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	HOXA9-1082	NM_152739	exon2	c.G704C	p.R235P	TACCTGCGGTCCC	.	143	56	119	0	.	1	0	1	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	GARS-91	NM_002047	exon1	c.G93C	p.L31L	GCTCCTGCTCCGC	.	35	20	1	0	G|0.889;C|0.111	24	11	13	0	0
PION	54103	bcgsc.ca	37	7	76950699	76950699	+	Missense_Mutation	SNP	C	C	T	rs17151692	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PION-514	NM_017439	exon25	c.G1945A	p.V649I	TTTCTACGATGTG	.	236	7	163	0	C|0.907;T|0.093	3	3	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PODXL-136	NM_001018111	exon1	c.84_89del	p.28_30del	TGGGAGGGCGACG	.	38	19	1	0	.	0	0	0	0	0
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	146805372	146805372	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	CNTNAP2-100	NM_014141	exon5	c.A684G	p.G228G	GCACGGAGAAGGA	.	153	67	114	0	.	0	0	0	0	0
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149427272	149427272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KRBA1-91	.	.	.	.	TGCCTGGAGAGCG	.	150	51	87	1	.	1	0	1	0	0
ABCB8	11194	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150731630	150731630	+	Silent	SNP	C	C	T	rs114212581	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ABCB8-108	NM_007188	exon4	c.C603T	p.H201H	GTCCCACGTTGGC	.	86	40	63	1	C|0.989;T|0.011	70	27	43	0	0
REEP4	80346	broad.mit.edu	37	8	21996554	21996554	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	REEP4-91	NM_025232	exon6	c.C438A	p.G146G	CAGCCTGCCGGCC	.	29	5	40	0	.	25	24	1	0	0
ADAM7	8756	bcgsc.ca	37	8	24342791	24342791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ADAM7-230	NM_003817	exon10	c.G877T	p.G293W	CATAGTGGGAAGT	.	58	4	72	0	.	0	0	0	0	0
PABPC1	26986	bcgsc.ca	37	8	101730010	101730010	+	Missense_Mutation	SNP	T	T	C	rs201501488	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PABPC1-68	NM_002568	exon3	c.A494G	p.D165G	TTGCGATCATTTA	.	106	11	159	2	T|0.984;C|0.016	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	.	NM_052886	exon1	c.64+1G>-	.	CGCCCCGGGGTCA	.	14	14	0	0	.	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	8	7	0	0	A|0.118;G|0.882	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144941419	144941419	+	Silent	SNP	C	C	T	rs12681478	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	EPPK1-25	NM_031308	exon1	c.G6003A	p.A2001A	TGCCTCCGCCTTC	.	114	6	151	1	C|0.740;T|0.260	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	10	10	0	0	G|0.992;C|0.006	1	0	1	0	0
DMRT2	10655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	1056586	1056586	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	DMRT2-514	NM_181872	exon4	c.A999G	p.R333R	TTATAGACAGTAT	.	152	58	103	0	.	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ERMP1-69	NM_024896	exon1	c.C300G	p.A100A	TCCAGCGGCCCCG	.	38	23	2	0	G|0.572;C|0.428	3	1	2	0	0
OR13J1	392309	broad.mit.edu	37	9	35869801	35869801	+	Silent	SNP	G	G	A	rs150584050	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	OR13J1-68	NM_001004487	exon1	c.C598T	p.L200L	CCGCCAGCAGGAA	.	152	4	124	1	G|0.996;A|0.004	0	0	0	0	0
BICD2	23299	broad.mit.edu	37	9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	BICD2-226	NM_001003800	exon1	c.C50A	p.A17E	GGCTGCGCCTCCA	.	86	11	14	1	.	9	8	1	0	0
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96435947	96435954	+	Frame_Shift_Del	DEL	GCCTGCAG	GCCTGCAG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GCCTGCAG	GCCTGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PHF2-91	NM_005392	exon18	c.2429_2436del	p.810_812del	ACTCCTGCCTGCA	.	215	74	187	0	.	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113168503	113168503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	SVEP1-75	NM_153366	exon38	c.C9377T	p.P3126L	ACAGACGGTGGGG	.	255	124	154	0	.	8	8	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	FPGS-90	NM_004957	exon1	c.A64G	p.I22V	CGCGGCATAACGA	.	5	5	0	0	A|0.235;G|0.765	1	0	1	0	0
ATXN3L	92552	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13337648	13337648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ATXN3L-542	NM_001135995	exon1	c.C406T	p.L136F	CCAAGAGAGAATT	.	100	28	102	1	.	0	0	0	0	0
ZRSR2	8233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	15821812	15821812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZRSR2-133	NM_005089	exon4	c.C205G	p.Q69E	GATAGGCAAAGAT	.	417	147	370	0	.	0	0	0	0	0
PCDH11X	27328	bcgsc.ca	37	X	91642748	91642748	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	PCDH11X-193	NM_001168360	exon5	c.C3159T	p.V1053V	GCGTGTCACATTT	.	959	373	734	6	.	0	0	0	0	0
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130218194	130218194	+	Silent	SNP	A	A	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ARHGAP36-133	NM_144967	exon5	c.A561T	p.A187A	GGGTGCAGTGTCT	.	130	54	121	0	.	0	0	0	0	0
ZNF185	7739	hgsc.bcm.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GAG	GAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	ZNF185-133	NM_001178109	exon7	c.475_477del	p.159_159del	GACACCGAGGAGG	.	265	13	162	2	.	0	0	0	0	0
MPP1	4354	broad.mit.edu;bcgsc.ca	37	X	154014564	154014564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	MPP1-132	NM_002436	exon6	c.G592C	p.D198H	TGTCATCCTTGTT	.	404	11	301	0	.	40	38	2	0	0
OR2T27	403239	bcgsc.ca	37	1	248813733	248813734	+	Frame_Shift_Ins	INS	-	-	C	rs200669807		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	OR2T27-47	NM_001001824	exon1	c.453_454insG	p.G151fs	AGACCCTCCCAGC	.	86	4	320	1	-|0.977;C|0.023	0	0	0	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCC	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	KRTAP5-5-23	NM_001001480	exon1	c.129_130insGGCTGTGGCTCC	p.G43delinsGGCGS	CTGTGGAGGCTGT	.	61	31	33	0	.	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	267	7	438	0	.	0	0	0	0	0
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	MCC-69	NM_001085377	exon1	c.64_65insGGC	p.S22delinsGS	TGCCGCTGCCGCC	.	53	8	16	0	.	0	0	0	0	0
HNRNPA0	10949	hgsc.bcm.edu	37	5	137089075	137089076	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	HNRNPA0-68	NM_006805	exon1	c.681_682insCGG	p.G227delinsGG	GCCGCCTCCGCCG	.	156	33	28	2	.	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	TTLL11-112	NM_001139442	exon1	c.368_369insAGGCCA	p.T123delinsKAT	TCCGCTGTGGCCT	.	23	10	0	0	-|0.843;TGGCCT|0.157	0	0	0	0	0
LILRB1	10859	bcgsc.ca	37	19	55147987	55147988	+	Missense_Mutation	DNP	GA	GA	CC	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	.	LILRB1-137	NM_001081637	exon14	c.A1697C	p.E615P	ATGCCGAGGTGAA	.	397	1	305	0	.	0	0	0	0	0