Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HES3	390992	hgsc.bcm.edu	37	1	6305303	6305303	+	Silent	SNP	C	C	A	rs61760837		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	HES3-514	NM_001024598	exon4	c.C297A	p.A99A	GAGCGCCGCCGGC	.	4	4	0	0	C|0.438;A|0.562	0	0	0	0	0
CTNNBIP1	56998	broad.mit.edu	37	1	9910794	9910794	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CTNNBIP1-226	NM_001012329	exon5	c.G228A	p.T76T	GTCTTCCGTCTCC	.	235	6	232	1	.	18	18	0	0	0
PGD	5226	bcgsc.ca	37	1	10460485	10460485	+	Silent	SNP	T	T	C	rs1049887	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PGD-91	NM_002631	exon3	c.T120C	p.D40D	AGTTGATGATTTC	.	140	6	115	0	T|0.754;C|0.246	51	51	0	0	0
PRAMEF11	440560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12884876	12884876	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001146344	exon4	c.T1235A	p.L412X	CAGAACAAGATCC	.	769	109	714	1	.	0	0	0	0	0
FUCA1	2517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24186340	24186340	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FUCA1-153	NM_000147	exon4	c.A716C	p.Y239S	TTCCAGTAAGTAT	.	87	14	86	0	.	65	54	11	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	OPRD1-69	NM_000911	exon1	c.G80T	p.C27F	GCGCCTGCCCCAG	.	26	26	0	0	G|0.061;T|0.939	0	0	0	0	0
EPHA10	284656	hgsc.bcm.edu	37	1	38227086	38227086	+	Missense_Mutation	SNP	A	A	T	rs4653328	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	EPHA10-1246	NM_001099439	exon3	c.T841A	p.F281I	CGCAGAAGTCACC	.	22	22	0	0	A|0.665;T|0.335	0	0	0	0	0
BMP8A	353500	hgsc.bcm.edu	37	1	39957913	39957913	+	Missense_Mutation	SNP	A	A	G	rs4660269	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	BMP8A-90	NM_181809	exon1	c.A250G	p.M84V	CACGCCATGGCTG	.	10	7	0	0	A|0.302;G|0.698	0	0	0	0	0
TCTEX1D4	343521	hgsc.bcm.edu	37	1	45271912	45271912	+	Silent	SNP	G	G	A	rs17886118	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TCTEX1D4-91	NM_001013632	exon2	c.C429T	p.D143D	GGCCTCGTCGCTG	.	11	5	0	0	G|0.822;A|0.178	0	0	0	0	0
ODF2L	57489	ucsc.edu	37	1	86842004	86842004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ODF2L-69	NM_001007022	exon8	c.C722T	p.A241V	TTTAAAGCTACAG	.	86	1	80	0	.	14	11	3	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NOTCH2-1441	NM_024408	exon1	c.C57G	p.C19W	GGCCGCGCAGCAC	.	14	11	0	0	G|0.680;C|0.320	5	4	1	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120612006	120612006	+	Silent	SNP	G	G	A	rs77243975	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NOTCH2-1441	NM_024408	exon1	c.C15T	p.R5R	AGCGGGGCGCAGG	.	11	10	0	0	G|0.500;A|0.500	13	6	7	0	0
THEM4	117145	hgsc.bcm.edu	37	1	151881885	151881885	+	Missense_Mutation	SNP	A	A	C	rs3748805		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	THEM4-522	NM_053055	exon1	c.T50G	p.L17R	GGCGGCAGGCACA	.	8	8	0	0	T|0.073;G|0.921	14	0	14	0	0
HRNR	388697	bcgsc.ca	37	1	152193286	152193286	+	Missense_Mutation	SNP	G	G	T	rs7545406	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	HRNR-93	NM_001009931	exon3	c.C819A	p.H273Q	AGATCTGTGTCGT	.	254	8	243	2	G|0.544;T|0.456	0	0	0	0	0
HRNR	388697	bcgsc.ca	37	1	152193291	152193291	+	Silent	SNP	G	G	T	rs6587652	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	HRNR-93	NM_001009931	exon3	c.C814A	p.R272R	TGTGTCGTTCACC	.	266	11	242	2	G|0.294;T|0.706	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152281825	152281825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FLG-106	NM_002016	exon3	c.C5537A	p.T1846N	GACGTGGTGTGGC	.	259	88	219	0	.	3	2	1	0	0
KCNN3	3782	broad.mit.edu	37	1	154842333	154842333	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	KCNN3-91	NM_001204087	exon1	c.G108A	p.Q36Q	CTGTTGCTGCTGC	.	70	4	47	2	.	150	138	11	0	1
RRNAD1	51093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156703253	156703253	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	RRNAD1-90	NM_015997	exon5	c.C577T	p.Q193X	AGAGCCCAGCGCC	.	58	6	52	0	.	26	25	1	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TOR3A-90	NM_022371	exon1	c.T37C	p.F13L	CTCTTTTTCCTGC	.	7	7	0	0	T|0.229;C|0.771	6	0	6	0	0
C10orf71	118461	bcgsc.ca	37	10	50533617	50533617	+	Silent	SNP	T	T	C	rs2377940	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	C10orf71-90	NM_001135196	exon3	c.T3027C	p.G1009G	CGAGGGTGACATA	.	266	8	201	1	T|0.133;C|0.867	0	0	0	0	0
STAMBPL1	57559	broad.mit.edu;bcgsc.ca	37	10	90665212	90665212	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	STAMBPL1-523	NM_020799	exon3	c.G43T	p.A15S	TTAGCTGCTATGC	.	71	5	58	0	.	1	1	0	0	0
MYOF	26509	bcgsc.ca	37	10	95107428	95107428	+	Missense_Mutation	SNP	G	G	A	rs11187393	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	MYOF-93	NM_013451	exon37	c.C4195T	p.R1399C	GAAAGCGGTCCAG	.	163	7	171	0	G|0.960;A|0.040	24	24	0	0	0
NFKB2	4791	hgsc.bcm.edu	37	10	104159196	104159196	+	Silent	SNP	A	A	G	rs4919633	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NFKB2-522	NM_001077494	exon13	c.A1269G	p.P423P	GGAGCCAAGCGCC	.	10	10	0	0	A|0.009;G|0.991	7	0	7	0	0
TAF5	6877	hgsc.bcm.edu	37	10	105128134	105128134	+	Missense_Mutation	SNP	T	T	G	rs10883859	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TAF5-92	NM_006951	exon1	c.T388G	p.S130A	GCGGGCTCCGGAG	.	21	8	0	0	T|0.623;G|0.377	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PWWP2B-90	NM_001098637	exon2	c.C1041T	p.P347P	CGAGCCCGTGTAC	.	20	13	0	0	C|0.860;T|0.140	60	29	31	0	0
MUC2	4583	bcgsc.ca	37	11	1093393	1093393	+	Missense_Mutation	SNP	G	G	A	rs199525790		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	MUC2-90	NM_002457	exon30	c.G5212A	p.G1738S	CCCACCGGCACAC	.	140	7	130	3	.	0	0	0	0	0
SYT8	90019	hgsc.bcm.edu	37	11	1858572	1858572	+	Missense_Mutation	SNP	C	C	T	rs2292474	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SYT8-91	NM_138567	exon9	c.C1117T	p.R373W	GCCCAGCGGCACC	.	30	4	0	0	C|0.602;T|0.398	0	0	0	0	0
STIM1	6786	bcgsc.ca	37	11	4103524	4103524	+	Silent	SNP	A	A	G	rs2304891	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	STIM1-91	NM_003156	exon8	c.A1080G	p.Q360Q	GGTGCAATATTAC	.	178	7	173	0	A|0.576;G|0.424	42	42	0	0	0
NLRP10	338322	broad.mit.edu	37	11	7982353	7982353	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NLRP10-209	NM_176821	exon2	c.C806A	p.P269H	TCCTTGGGACTCA	.	66	3	63	0	.	0	0	0	0	0
FNBP4	23360	hgsc.bcm.edu	37	11	47788664	47788669	+	In_Frame_Del	DEL	GGTGGT	GGTGGT	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	GGTGGT	GGTGGT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FNBP4-91	NM_015308	exon1	c.172_177del	p.58_59del	CACCGCGGTGGTG	.	13	12	5	4	.	0	0	0	0	0
FNBP4	23360	hgsc.bcm.edu	37	11	47788695	47788695	+	Missense_Mutation	SNP	G	G	C	rs11039375	byfrequency;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FNBP4-91	NM_015308	exon1	c.C146G	p.P49R	GGGGCGGGCTGGC	.	23	13	0	0	G|0.975;C|0.025	2	0	2	0	0
SLC22A24	283238	broad.mit.edu;bcgsc.ca	37	11	62886800	62886800	+	Missense_Mutation	SNP	G	G	C	rs4963245	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001136506	exon3	c.C514G	p.R172G	TCTTCCGTCCAAC	.	127	5	107	0	G|0.827;C|0.173	0	0	0	0	0
SAC3D1	29901	hgsc.bcm.edu	37	11	64809090	64809090	+	Missense_Mutation	SNP	T	T	G	rs12271134		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SAC3D1-90	NM_013299	exon1	c.T326G	p.L109R	CTGTGCTCCTGGA	.	5	5	0	0	T|0.005;G|0.995	3	0	3	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498648	71498648	+	Silent	SNP	A	A	G	rs12277291	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FAM86C1-90	NM_152563	exon1	c.A66G	p.A22A	CCTGGCAGCGCGC	.	22	8	2	0	A|0.630;G|0.370	1	1	0	0	0
FAM86C1	55199	hgsc.bcm.edu	37	11	71498671	71498671	+	Missense_Mutation	SNP	G	G	C	rs12283346	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FAM86C1-90	NM_152563	exon1	c.G89C	p.R30P	CCTTCCGCTGGCA	.	21	8	2	0	G|0.601;C|0.399	0	0	0	0	0
CHRDL2	25884	broad.mit.edu;bcgsc.ca	37	11	74429769	74429769	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CHRDL2-90	NM_015424	exon2	c.C191A	p.S64X	ACCTCTGAGCAGG	.	52	4	62	0	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751542	76751542	+	Splice_Site	DEL	T	T	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_138706	exon2	c.946+1T>-	.	TGTGTCTTGGAGC	.	29	28	0	0	.	0	0	0	0	0
PLBD1	79887	hgsc.bcm.edu	37	12	14720583	14720583	+	Silent	SNP	T	T	C	rs7954623		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PLBD1-90	NM_024829	exon1	c.A48G	p.P16P	AAGCGGTGGCGGC	.	6	6	0	0	T|0.056;C|0.944	3	0	3	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TUBA1C-90	NM_032704	exon4	c.G492A	p.K164K	CAAGAAGTCCAAG	.	250	19	218	34	G|0.998;A|0.002	1045	419	626	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	KRT7-90	NM_005556	exon1	c.A135G	p.S45S	CGCCTCACGGCCG	.	21	21	0	0	A|0.133;G|0.867	0	0	0	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337183	96337183	+	Missense_Mutation	SNP	A	A	G	rs7955450	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	AMDHD1-90	NM_152435	exon1	c.A7G	p.S3G	ATGGCAAGCGGCC	.	21	21	0	0	A|0.273;G|0.727	1	0	1	0	0
AMDHD1	144193	hgsc.bcm.edu	37	12	96337225	96337225	+	Silent	SNP	C	C	T	rs1436121	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	AMDHD1-90	NM_152435	exon1	c.C49T	p.L17L	GTGGTGCTGGTGT	.	32	20	1	0	C|0.752;T|0.248	0	0	0	0	0
FAM109A	144717	hgsc.bcm.edu	37	12	111800827	111800835	+	In_Frame_Del	DEL	GCCACCCCC	GCCACCCCC	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	GCCACCCCC	GCCACCCCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FAM109A-90	NM_001177996	exon4	c.436_444del	p.146_148del	GGCCATGCCACCC	.	24	20	2	1	.	0	0	0	0	0
IRS2	8660	hgsc.bcm.edu	37	13	110435728	110435728	+	Silent	SNP	C	C	G	rs75172981		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	IRS2-1334	NM_003749	exon1	c.G2673C	p.T891T	CAGGCGCGTGGGC	.	12	6	0	0	C|0.970;G|0.030	6	3	3	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ING1-515	NM_005537	exon1	c.C526T	p.L176L	GCATCTCTGCTGA	.	14	7	0	0	C|0.372;T|0.628	2	2	0	0	0
HEATR5A	25938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31765136	31765136	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	HEATR5A-23	NM_015473	exon34	c.T5598C	p.T1866T	CTCAAGAGTAGCT	.	82	24	53	0	.	17	14	3	0	0
NEMF	9147	broad.mit.edu	37	14	50295792	50295792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NEMF-90	NM_004713	exon13	c.C1212A	p.N404K	AACATGGTTTGTT	.	84	4	88	0	.	18	18	0	0	0
VSX2	338917	hgsc.bcm.edu	37	14	74706435	74706435	+	Silent	SNP	C	C	G	rs201395979		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	VSX2-69	NM_182894	exon1	c.C171G	p.A57A	CCTGGCCCCCGGG	.	21	10	3	0	C|0.996;G|0.004	0	0	0	0	0
BCL11B	64919	hgsc.bcm.edu	37	14	99641967	99641967	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	BCL11B-1147	NM_138576	exon4	c.G1206A	p.P402P	CAGGAACGGGGAC	.	8	4	1	1	.	1	1	0	0	0
CCDC85C	317762	hgsc.bcm.edu	37	14	100069940	100069940	+	Silent	SNP	C	C	T	rs189673537	by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001144995	exon1	c.G357A	p.E119E	GGCCACCTCGTGC	.	6	5	0	0	C|0.982;T|0.018	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CKB-115	NM_001823	exon4	c.C456A	p.R152R	GATGGCGCGGCGC	.	8	8	0	0	G|0.327;T|0.673	58	0	58	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105054934	105054934	+	Silent	SNP	A	A	G	rs12880814	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	C14orf180-492	NM_001008404	exon5	c.A297G	p.P99P	CAGGCCACACGGC	.	20	20	0	0	A|0.615;G|0.385	0	0	0	0	0
C14orf180	400258	hgsc.bcm.edu	37	14	105055119	105055127	+	Frame_Shift_Del	DEL	GACGGGCAG	GACGGGCAG	-	rs61397088	bycluster;alternate_allele	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	GACGGGCAG	GACGGGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	C14orf180-492	NM_001008404	exon5	c.482_784del	p.161_161del	GGCTCTGACGGGC	.	22	8	1	0	-|1.000;|0.000	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369531	65369531	+	Silent	SNP	G	G	T	rs2946642	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001101362	exon1	c.G378T	p.A126A	TGCCGCGCTCTTC	.	15	15	0	0	G|0.479;T|0.521	0	0	0	0	0
CSPG4	1464	broad.mit.edu	37	15	75977087	75977087	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CSPG4-229	NM_001897	exon5	c.C4439A	p.T1480K	AGGCCTGTGTTTG	.	59	7	51	0	.	0	0	0	0	0
CSPG4	1464	bcgsc.ca	37	15	75979782	75979782	+	Silent	SNP	G	G	T	rs8030131	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CSPG4-229	NM_001897	exon3	c.C3624A	p.R1208R	GGTGTCGCGGGGG	.	159	7	159	1	G|0.567;T|0.433	5	5	0	0	0
ZNF710	374655	bcgsc.ca	37	15	90622936	90622936	+	Missense_Mutation	SNP	G	G	A	rs117711777	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ZNF710-90	NM_198526	exon5	c.G1870A	p.G624S	CTCGACGGCCAGC	.	268	8	235	3	G|0.992;A|0.008	21	21	0	0	0
RCCD1	91433	hgsc.bcm.edu	37	15	91499986	91499986	+	Missense_Mutation	SNP	G	G	T	rs4932380		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	RCCD1-90	NM_001017919	exon2	c.G22T	p.A8S	CCGGGGGCCTGGT	.	33	21	1	0	G|0.822;T|0.178	3	1	2	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	IRX3-90	NM_024336	exon2	c.T1265C	p.L422P	GGGTGCAGGCGGG	.	7	7	0	0	T|0.035;G|0.004	3	0	3	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CCDC102A-91	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	4	4	0	0	G|0.001;A|0.999	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ZFPM1-90	NM_153813	exon10	c.1331_1339del	p.444_447del	GAGCGGAGCCTCT	.	21	0	2	0	.	0	0	0	0	0
CDH15	1013	hgsc.bcm.edu	37	16	89258747	89258747	+	Missense_Mutation	SNP	A	A	C	rs75791347	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CDH15-523	NM_004933	exon11	c.A1750C	p.K584Q	TGCGGCAAGGACG	.	4	4	0	0	A|0.532;C|0.468	0	0	0	0	0
SPIRE2	84501	hgsc.bcm.edu	37	16	89894998	89894998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SPIRE2-90	NM_032451	exon1	c.G40A	p.A14T	GCGGGCGCAGGGC	.	5	4	0	0	.	0	0	0	0	0
KDM6B	23135	broad.mit.edu;bcgsc.ca	37	17	7752668	7752668	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	KDM6B-205	NM_001080424	exon11	c.T3062G	p.L1021R	GGAACCTGGACCT	.	174	8	177	0	.	45	44	1	0	0
MYH3	4621	bcgsc.ca	37	17	10541515	10541515	+	Missense_Mutation	SNP	C	C	T	rs2285477	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	MYH3-95	NM_002470	exon27	c.G3574A	p.A1192T	TCAGCGCGGCCAC	.	106	6	119	0	C|0.348;T|0.652	1	1	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_015077	exon1	c.G68C	p.R23P	CACGGCGGGGCGC	.	11	11	0	0	G|0.001;C|0.999	2	0	2	0	0
ARHGAP23	57636	hgsc.bcm.edu	37	17	36666551	36666551	+	Silent	SNP	T	T	C	rs62074752		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ARHGAP23-205	NM_001199417	exon24	c.T3819C	p.D1273D	GGGGGATGAGGCG	.	8	8	0	0	C|0.823;G|0.000;T|0.177	1	0	1	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001130677	exon1	c.C187G	p.L63V	CCGCCAGCTCCCC	.	11	11	0	0	G|0.824;C|0.176	0	0	0	0	0
TBX21	30009	hgsc.bcm.edu	37	17	45810919	45810919	+	Missense_Mutation	SNP	C	C	G	rs2240017	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TBX21-90	NM_013351	exon1	c.C99G	p.H33Q	GCAGCACCGCTAC	.	14	7	0	0	C|0.189;G|0.811	0	0	0	0	0
SCN4A	6329	bcgsc.ca	37	17	62020348	62020348	+	Missense_Mutation	SNP	T	T	C	rs2058194	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SCN4A-93	NM_000334	exon23	c.A4126G	p.N1376D	TCTGGTTGTCTGT	.	483	12	467	3	T|0.407;C|0.593	2	2	0	0	0
SLC16A5	9121	bcgsc.ca	37	17	73089852	73089852	+	Silent	SNP	T	T	C	rs4788863	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SLC16A5-90	NM_001271765	exon3	c.T121C	p.L41L	ACTGAATTGCAAT	.	201	12	209	1	T|0.323;C|0.677	3	3	0	0	0
NPTX1	4884	hgsc.bcm.edu	37	17	78450174	78450174	+	Missense_Mutation	SNP	A	A	T	rs201884300		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NPTX1-90	NM_002522	exon1	c.T73A	p.F25I	GCCCGAAATCCTG	.	21	8	2	0	A|0.998;T|0.002	0	0	0	0	0
TTC39C	125488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21703901	21703901	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TTC39C-91	NM_001135993	exon9	c.G1290A	p.V430V	CTCGGTGAAAAAG	.	86	17	110	0	.	0	0	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23807117	23807117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TAF4B-71	NM_005640	exon1	c.G220T	p.A74S	AAAGTGGCTCCGG	.	80	4	82	0	.	1	1	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76753768	76753768	+	Missense_Mutation	SNP	C	C	G	rs2447437	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SALL3-155	NM_171999	exon2	c.C1777G	p.L593V	CCGCCCCTCACTA	.	4	4	0	0	C|0.780;G|0.220	0	0	0	0	0
KISS1R	84634	hgsc.bcm.edu	37	19	920642	920642	+	Missense_Mutation	SNP	T	T	A	rs350132		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	KISS1R-91	NM_032551	exon5	c.T1091A	p.L364H	AGCTGCTCCGCCT	.	7	5	0	0	T|0.232;A|0.768	0	0	0	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	KLF16-90	NM_031918	exon2	c.T660C	p.P220P	GGCACCAGGGCGC	.	23	22	0	0	A|0.591;G|0.409	14	0	14	0	0
TICAM1	148022	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4818321	4818321	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TICAM1-153	NM_182919	exon2	c.C69T	p.L23L	ATACAAGAGCTTG	.	47	7	51	0	.	12	10	2	0	0
ARHGEF18	23370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7506565	7506565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ARHGEF18-228	NM_001130955	exon2	c.C569A	p.A190D	ATGAAGCCGATTC	.	57	9	55	0	.	20	17	3	0	0
LPPR2	0	broad.mit.edu	37	19	11472132	11472132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	LPPR2-153	NM_022737	exon6	c.G631T	p.A211S	GATGCGGCCCTCT	.	121	8	14	0	.	7	7	0	0	0
CACNA1A	773	hgsc.bcm.edu	37	19	13409696	13409696	+	Missense_Mutation	SNP	C	C	G	rs16022	bycluster;byfrequency;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CACNA1A-67	NM_001127221	exon19	c.G2754C	p.E918D	CTCGCCCTCCCAG	.	20	8	0	0	C|0.363;G|0.637	0	0	0	0	0
RFX1	5989	hgsc.bcm.edu	37	19	14073588	14073588	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	RFX1-92	NM_002918	exon21	c.C2859A	p.G953G	CTCCGGGCCCAGC	.	11	9	2	0	.	8	4	4	0	0
CALR3	125972	bcgsc.ca	37	19	16591464	16591464	+	Silent	SNP	G	G	A	rs9305079	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CALR3-90	NM_145046	exon8	c.C972T	p.Y324Y	ATCTGCGTACTCT	.	76	6	67	0	G|0.352;A|0.648	1	1	0	0	0
ZNF676	163223	ucsc.edu	37	19	22363448	22363448	+	Silent	SNP	A	A	T	rs200452805		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ZNF676-90	NM_001001411	exon3	c.T1071A	p.I357I	ATGAATAATCTTA	.	33	4	26	1	.	41	0	40	1	0
NUDT19	390916	hgsc.bcm.edu	37	19	33183352	33183352	+	Silent	SNP	G	G	C	rs61732600	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NUDT19-22	NM_001105570	exon1	c.G486C	p.P162P	ACCGCCGGGCCTG	.	20	9	0	0	G|0.743;C|0.257	1	0	1	0	0
GGN	199720	hgsc.bcm.edu	37	19	38876464	38876464	+	Missense_Mutation	SNP	C	C	G	rs11083455		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	GGN-90	NM_152657	exon3	c.G1438C	p.A480P	GGGCTGCGGTGGG	.	16	13	0	0	C|0.789;G|0.211	0	0	0	0	0
RINL	126432	hgsc.bcm.edu	37	19	39360720	39360720	+	Missense_Mutation	SNP	G	G	A	rs8110393		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	RINL-91	NM_001195833	exon9	c.C1205T	p.P402L	GGGGCGGGGCTCT	.	18	14	0	0	G|0.349;A|0.651	0	0	0	0	0
NTN5	126147	hgsc.bcm.edu	37	19	49164952	49164952	+	Silent	SNP	A	A	G	rs281392	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NTN5-136	NM_145807	exon7	c.T1452C	p.S484S	CCTGGGACTGGGT	.	10	6	1	0	A|0.464;G|0.536	0	0	0	0	0
IRF3	3661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50163981	50163981	+	Missense_Mutation	SNP	C	C	T	rs148672096	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	IRF3-92	NM_001197122	exon7	c.G1103A	p.R368H	CCATCACGAGCCT	.	57	26	55	0	C|0.995;T|0.005	1	1	0	0	0
CTU1	90353	hgsc.bcm.edu	37	19	51607507	51607507	+	Missense_Mutation	SNP	G	G	A	rs17855403		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CTU1-68	NM_145232	exon2	c.C320T	p.A107V	CAGCGCGCCGCCT	.	6	6	0	0	G|0.838;A|0.162	4	0	4	0	0
PPP1R12C	54776	hgsc.bcm.edu	37	19	55628609	55628609	+	Silent	SNP	A	A	G	rs66707428		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PPP1R12C-227	NM_017607	exon1	c.T303C	p.G101G	GCTGATACCGTCG	.	13	6	0	0	A|0.808;G|0.192	3	2	1	0	0
SSC5D	284297	hgsc.bcm.edu	37	19	56002175	56002175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001195267	exon6	c.C623T	p.A208V	GGTGCGCCGGACG	.	39	24	3	0	.	0	0	0	0	0
TPO	7173	hgsc.bcm.edu	37	2	1481231	1481231	+	Missense_Mutation	SNP	G	G	C	rs2175977	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TPO-332	NM_175719	exon8	c.G1193C	p.S398T	GCGCCAGCGAGGT	.	22	11	0	0	G|0.301;C|0.699	0	0	0	0	0
GAREML	150946	hgsc.bcm.edu	37	2	26408064	26408064	+	Silent	SNP	T	T	C	rs4665833		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001168241	exon4	c.T1347C	p.D449D	GCTCGATCTCATC	.	4	4	0	0	T|0.084;C|0.916	0	0	0	0	0
FEZ2	9637	hgsc.bcm.edu	37	2	36825137	36825137	+	Missense_Mutation	SNP	G	G	A	rs1544655		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FEZ2-23	NM_001042548	exon1	c.C149T	p.P50L	CAGGCCGGGGCCG	.	4	4	0	0	T|0.817;C|0.180	29	0	29	0	0
KIAA1211L	343990	hgsc.bcm.edu	37	2	99439792	99439792	+	Missense_Mutation	SNP	G	G	C	rs3731660		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_207362	exon7	c.C944G	p.S315C	GCGGAGGAGTGCT	.	5	5	0	0	G|0.964;C|0.036	0	0	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682226	106682226	+	Silent	SNP	T	T	C	rs4271786		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	C2orf40-90	NM_032411	exon1	c.T6C	p.A2A	CATGGCTGCCTCC	.	21	5	0	0	T|0.765;C|0.235	8	8	0	0	0
C2orf40	84417	hgsc.bcm.edu	37	2	106682235	106682235	+	Silent	SNP	C	C	G	rs4266035		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	C2orf40-90	NM_032411	exon1	c.C15G	p.P5P	CTCCCCCGCGCGG	.	21	5	0	0	C|0.795;G|0.205	8	8	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_023016	exon1	c.A126G	p.L42L	CGCCCTAGGCGGC	.	13	13	0	0	A|0.029;G|0.971	0	0	0	0	0
TANK	10010	broad.mit.edu	37	2	162036237	162036237	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TANK-228	NM_004180	exon2	c.G64T	p.D22Y	TGCATGGATAGAG	.	91	3	97	0	.	121	121	0	0	0
SP5	389058	hgsc.bcm.edu	37	2	171573185	171573185	+	Silent	SNP	G	G	T	rs1134626	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SP5-90	NM_001003845	exon2	c.G468T	p.P156P	GCTGCCGCCAGGC	.	13	8	0	0	G|0.766;T|0.234	0	0	0	0	0
DYTN	391475	bcgsc.ca	37	2	207527840	207527840	+	Missense_Mutation	SNP	G	G	T	rs2115591	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	DYTN-23	NM_001093730	exon11	c.C1420A	p.Q474K	CTTTCTGTGGCAT	.	252	7	217	1	G|0.615;N|0.000	0	0	0	0	0
LOC151174	0	broad.mit.edu	37	2	239134056	239134056	+	RNA	SNP	A	A	G	rs7572285	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	.	.	.	.	TGCAAGAGCACCA	.	202	6	202	2	A|0.645;G|0.355	2	2	0	0	0
LOC151174	0	broad.mit.edu	37	2	239134063	239134063	+	RNA	SNP	G	G	T	rs7584376	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	.	.	.	.	GCACCAGGGCAGA	.	200	6	199	2	G|0.823;T|0.177	1	1	0	0	0
LOC643387	0	broad.mit.edu	37	2	239140728	239140728	+	RNA	SNP	A	A	G	rs11689033	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	.	.	.	.	CTGGAGAAATCCG	.	110	5	96	2	A|0.825;G|0.175	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PANK2-115	NM_153638	exon1	c.G377C	p.G126A	TGGGAGGGGGCCG	.	9	9	0	0	G|0.122;C|0.878	1	0	1	0	0
PLCB4	5332	broad.mit.edu;bcgsc.ca	37	20	9453937	9453937	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PLCB4-274	NM_001172646	exon37	c.G3420A	p.K1140K	CATGAAGCAGTCC	.	78	9	86	3	.	0	0	0	0	0
WFDC5	149708	bcgsc.ca	37	20	43739119	43739119	+	Missense_Mutation	SNP	G	G	A	rs17422688	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	WFDC5-91	NM_145652	exon3	c.C289T	p.H97Y	CCTTGTGACACAG	.	119	6	118	1	G|0.896;A|0.104	0	0	0	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36041978	36041978	+	Silent	SNP	A	A	G	rs7280973		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CLIC6-91	NM_053277	exon1	c.A291G	p.Q97Q	GCCCCAAGGAGGG	.	6	6	0	0	A|0.001;G|0.999	0	0	0	0	0
TBX1	6899	hgsc.bcm.edu	37	22	19753444	19753444	+	Missense_Mutation	SNP	G	G	A	rs41298838	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TBX1-154	NM_080647	exon8	c.G928A	p.G310S	CGGCCCGGCGCAC	.	6	6	0	0	G|0.989;A|0.011	0	0	0	0	0
LHFPL4	375323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9543923	9543923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	LHFPL4-71	NM_198560	exon4	c.G716T	p.C239F	ACGGGGCAGGGAA	.	173	70	182	0	.	0	0	0	0	0
RASSF1	11186	hgsc.bcm.edu	37	3	50378176	50378176	+	Missense_Mutation	SNP	T	T	G	rs4688725	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	RASSF1-417	NM_007182	exon1	c.A61C	p.K21Q	GGCCCTTCCCAGC	.	15	4	0	0	T|0.731;G|0.269	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	LRIG1-230	NM_015541	exon1	c.C76G	p.L26V	GCCGAAGCAAAAG	.	13	5	0	0	G|0.237;C|0.763	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	LRIG1-230	NM_015541	exon1	c.C70G	p.L24V	GCAAAAGCAGCCA	.	16	6	0	0	G|0.252;C|0.748	0	0	0	0	0
EFCC1	79825	hgsc.bcm.edu	37	3	128720487	128720487	+	Missense_Mutation	SNP	A	A	G	rs1871951	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_024768	exon1	c.A16G	p.T6A	GTCAGCACGGGCG	.	5	5	0	0	A|0.315;G|0.685	0	0	0	0	0
PRR23C	389152	hgsc.bcm.edu	37	3	138763343	138763343	+	Silent	SNP	T	T	G	rs6804898	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PRR23C-23	NM_001134657	exon1	c.A120C	p.R40R	CGCCGCTCGGGAT	.	32	11	1	0	T|0.848;G|0.152	0	0	0	0	0
IDUA	3425	bcgsc.ca	37	4	994414	994414	+	Missense_Mutation	SNP	G	G	A	rs3755955	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	IDUA-91	NM_000203	exon3	c.G314A	p.R105Q	CTGGACGGGGCCT	.	216	7	261	1	G|0.859;A|0.141	28	28	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	RBM47-25	NM_001098634	exon4	c.C57G	p.S19S	CTTGGCGGAGGAC	.	12	12	0	0	G|0.794;C|0.206	41	0	41	0	0
ZAR1	326340	hgsc.bcm.edu	37	4	48492769	48492769	+	Missense_Mutation	SNP	A	A	T	rs74929644		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ZAR1-90	NM_175619	exon1	c.A461T	p.Q154L	CCCAGCAGCCATC	.	8	8	0	0	A|0.552;T|0.448	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502307	56502307	+	Missense_Mutation	SNP	G	G	T	rs3828555	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	NMU-650	NM_006681	exon1	c.C53A	p.A18E	GACGCCGCGGCCA	.	12	12	0	0	G|0.853;T|0.147	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537270	88537270	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	DSPP-90	NM_014208	exon5	c.C3456T	p.D1152D	CAGCGACAGCAGT	.	756	51	674	7	.	0	0	0	0	0
LRIT3	345193	broad.mit.edu	37	4	110772859	110772859	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	LRIT3-90	NM_198506	exon2	c.C316A	p.Q106K	CTGAAGCAACTGC	.	60	7	64	1	.	0	0	0	0	0
FAT4	79633	ucsc.edu	37	4	126240510	126240510	+	Silent	SNP	T	T	C	rs2940779	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FAT4-108	NM_024582	exon1	c.T2944C	p.L982L	GTCATCTTAACAG	.	30	4	17	0	T|0.291;C|0.709	1	1	0	0	0
TRIO	7204	bcgsc.ca	37	5	14397238	14397238	+	Silent	SNP	T	T	C	rs30774	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TRIO-562	NM_007118	exon29	c.T4398C	p.D1466D	CAATGATGCCATG	.	109	5	96	1	T|0.590;C|0.410	13	13	0	0	0
RGMB	285704	hgsc.bcm.edu	37	5	98109828	98109828	+	Silent	SNP	G	G	A	rs2547973	bycluster;byfrequency;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001012761	exon3	c.G177A	p.E59E	GGTTGAGCAGCGC	.	12	10	0	0	G|0.735;A|0.265	0	0	0	0	0
PCDHA2	56146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140174742	140174742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PCDHA2-94	NM_031495	exon1	c.C193T	p.R65W	CTGTTCCGGGTGG	.	67	5	56	0	.	1	1	0	0	0
PCDHA9	9752	bcgsc.ca	37	5	140228164	140228164	+	Missense_Mutation	SNP	C	C	A	rs251353	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PCDHA9-138	NM_031857	exon1	c.C84A	p.S28R	GGGGAGCGGCCAG	.	229	7	212	0	C|0.554;A|0.446	0	0	0	0	0
PCDHB10	56126	hgsc.bcm.edu;mdanderson.org	37	5	140573844	140573844	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PCDHB10-92	NM_018930	exon1	c.C1719T	p.T573T	CTGCACCGAGCTG	.	202	49	11	0	.	17	17	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ARL10-91	NM_173664	exon1	c.G39C	p.L13L	GGCGCTGGGCGGC	.	11	5	2	0	G|0.585;C|0.415	0	0	0	0	0
CLPSL1	340204	bcgsc.ca	37	6	35748931	35748931	+	Missense_Mutation	SNP	T	T	C	rs34109614	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_001010886	exon1	c.T44C	p.F15S	TCTTCTTCTTTCT	.	118	6	112	0	C|0.301;G|0.000;T|0.699	0	0	0	0	0
PRIM2	5558	bcgsc.ca	37	6	57393160	57393160	+	RNA	SNP	G	G	A	rs76686926	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PRIM2-227	.	.	.	.	TGGGAAGATTTCT	.	24	7	30	0	G|0.500;A|0.500	4	4	0	0	0
ADGB	79747	broad.mit.edu;bcgsc.ca	37	6	147106841	147106841	+	Silent	SNP	A	A	G	rs259391	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_024694	exon32	c.A4308G	p.K1436K	ACCAAAAGAAGAA	.	77	4	78	0	A|0.449;G|0.551	0	0	0	0	0
ZC3H12D	340152	hgsc.bcm.edu	37	6	149772180	149772180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_207360	exon6	c.G1223A	p.G408D	TGCAGGCCGGGCG	.	25	13	4	0	.	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	LRP11-90	NM_032832	exon1	c.C275G	p.P92R	CTGCCCGGGCCCG	.	8	6	0	0	G|0.492;C|0.508	3	1	2	0	0
PRR18	285800	hgsc.bcm.edu	37	6	166720806	166720806	+	Silent	SNP	G	G	C	rs911203	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PRR18-514	NM_175922	exon1	c.C825G	p.S275S	AGCCGCGGACTCC	.	11	6	2	0	G|0.796;C|0.204	0	0	0	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	USP42-659	NM_032172	exon15	c.G2336C	p.R779P	CGCCCCGCGATCC	.	24	11	1	0	G|0.456;C|0.544	9	6	3	0	0
GLI3	2737	hgsc.bcm.edu	37	7	42005678	42005678	+	Missense_Mutation	SNP	G	G	A	rs929387	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	GLI3-1149	NM_000168	exon15	c.C2993T	p.P998L	TGGCCCGGCGCAT	.	14	14	0	0	G|0.565;A|0.435	2	0	2	0	0
MUC17	140453	hgsc.bcm.edu	37	7	100677145	100677145	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	MUC17-95	NM_001040105	exon3	c.A2448G	p.T816T	CATCACACCGGTG	.	148	11	131	0	.	0	0	0	0	0
MUC17	140453	bcgsc.ca	37	7	100681211	100681211	+	Missense_Mutation	SNP	G	G	C	rs147094151	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	MUC17-95	NM_001040105	exon3	c.G6514C	p.V2172L	ACCACAGTGGTGG	.	130	11	136	8	G|0.968;C|0.032	0	0	0	0	0
KCP	375616	broad.mit.edu	37	7	128526968	128526968	+	RNA	SNP	T	T	G	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	KCP-68	.	.	.	.	GAGGGGTGGGGGC	.	42	4	45	2	.	0	0	0	0	0
SSPO	23145	bcgsc.ca	37	7	149518961	149518961	+	Silent	SNP	T	T	C	rs1008335	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_198455	exon90	c.T12765C	p.A4255A	TGAGGCTTGGACG	.	365	12	346	3	T|0.553;C|0.447	0	0	0	0	0
SHH	6469	hgsc.bcm.edu	37	7	155596114	155596114	+	Missense_Mutation	SNP	C	C	T	rs104894047	bycluster;byfrequency;by1000genomes	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SHH-1134	NM_000193	exon3	c.G869A	p.G290D	CCCGAGCCCGAGG	.	10	8	0	0	C|0.993;T|0.007	2	0	2	0	0
FAM160B2	64760	bcgsc.ca	37	8	21956108	21956108	+	Missense_Mutation	SNP	A	A	G	rs35497596	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	.	NM_022749	exon7	c.A943G	p.T315A	ATTGCCACCTTAG	.	133	5	171	1	A|0.627;G|0.373	30	30	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ZNF696-90	NM_030895	exon3	c.A1023G	p.R341R	CCAGCGACTCCAC	.	29	8	0	0	A|0.118;G|0.882	2	1	1	0	0
OPLAH	26873	hgsc.bcm.edu	37	8	145106939	145106940	+	Splice_Site	DEL	CC	CC	-	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	OPLAH-68	.	.	.	.	CCCGAGCCCCCCG	.	16	16	1	1	.	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ZNF517-90	NM_213605	exon5	c.T1046C	p.V349A	GCGGCGTGGGGCA	.	22	22	0	0	G|0.992;C|0.006	3	0	3	0	0
KIAA1432	57589	broad.mit.edu	37	9	5763487	5763487	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	KIAA1432-90	NM_001135920	exon19	c.G2460T	p.V820V	TGTTGTGGAGAGA	.	91	5	95	0	.	11	11	0	0	0
FAM154A	158297	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	18928282	18928282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	FAM154A-69	NM_153707	exon4	c.G1193A	p.G398E	ACATTTCCTCGAG	.	111	20	118	1	.	0	0	0	0	0
SPTLC1	10558	ucsc.edu;bcgsc.ca	37	9	94842321	94842321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	SPTLC1-154	NM_006415	exon5	c.C404A	p.P135H	CCTCTGGGTCCAC	.	28	4	23	0	.	29	29	0	0	0
CRB2	286204	hgsc.bcm.edu	37	9	126136139	126136139	+	Missense_Mutation	SNP	C	C	T	rs73571431		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CRB2-91	NM_173689	exon10	c.C3329T	p.T1110M	GTCACACGCACCC	.	11	4	1	0	C|0.875;T|0.125	0	0	0	0	0
PRDM12	59335	hgsc.bcm.edu	37	9	133556930	133556930	+	Silent	SNP	C	C	T	rs12004652	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PRDM12-90	NM_021619	exon5	c.C978T	p.P326P	GCCGCCCAGCACC	.	15	15	0	0	C|0.686;T|0.314	0	0	0	0	0
QSOX2	169714	hgsc.bcm.edu	37	9	139137420	139137420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	QSOX2-91	NM_181701	exon1	c.A230G	p.N77S	GAGCTGTTGGCGG	.	10	6	1	0	.	6	3	3	0	0
PNPLA7	375775	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	140414395	140414395	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PNPLA7-91	NM_001098537	exon11	c.C1058A	p.P353Q	AGCCGCGGTGGCT	.	71	5	69	0	.	1	1	0	0	0
CSF2RA	1438	bcgsc.ca	37	X	1422868	1422868	+	Silent	SNP	G	G	A	rs28460440	byfrequency	TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	CSF2RA-42	NM_001161530	exon10	c.G1101A	p.V367V	AATCGTGGGAACC	.	881	18	879	9	G|0.634;A|0.367	1	1	0	0	0
TFDP3	51270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	132351801	132351801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	TFDP3-131	NM_016521	exon1	c.C487T	p.R163C	AGGTGCGCCGTTT	.	116	18	94	0	.	0	0	0	0	0
HLX	3142	hgsc.bcm.edu	37	1	221053600	221053601	+	In_Frame_Ins	INS	-	-	GCAGCAACAGCCGCC	novel		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	HLX-70	NM_021958	exon1	c.401_402insGCAGCAACAGCCGCC	p.Q134delinsQQQQPP	AGCCGCAGCAGCA	.	92	19	23	0	.	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu	37	5	128797315	128797316	+	In_Frame_Ins	INS	-	-	CCCGGC	rs142924298		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	ADAMTS19-295	NM_133638	exon2	c.594_595insCCCGGC	p.N198delinsNPG	GCCAAATCCCGGC	.	38	7	5	2	-|0.817;CCCGGC|0.183	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-PK-A5H9-01A-11D-A29I-10	TCGA-PK-A5H9-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	cb1f20fc-0df5-42f5-91b8-624bee1a532a	4fa707a6-752b-4fda-9bc0-b07c80cf65c1	.	PODXL-136	NM_005397	exon1	c.90_91insGTCGCC	p.P30delinsPSP	CTGGGAGGGCGAC	.	40	12	0	0	.	0	0	0	0	0