Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All B4GALNT2 0 genome.wustl.edu 37 17 47247044 47247044 + Missense_Mutation SNP A A G TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 17 47247044 47247044 A G SNP B4GALNT2 ENST00000300404 human ensembl 69_37n +1 known missense c.1655 p.K552R 1.000 pirsf_GM2_synthase pfam_Glyco_trans_2,pirsf_GM2_synthase - no_errors B4GALNT2 HGNC ENSG00000167080 79 0 0.00 39 31 44.29 - - - BRCA1 0 genome.wustl.edu 37 17 41258536 41258536 + Missense_Mutation SNP T T G TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 17 41258536 41258536 T G SNP BRCA1 ENST00000471181 human ensembl 69_37n -1 known missense c.149 p.K50T 1.000 pirsf_BRCA1,pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING - no_errors BRCA1 HGNC ENSG00000012048 47 0 0.00 35 14 28.57 - - - CATSPER2P1 0 genome.wustl.edu 37 15 44028223 44028223 + RNA SNP C C T TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 15 44028223 44028223 C T SNP CATSPER2P1 ENST00000381680 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors CATSPER2P1 HGNC ENSG00000205771 14 0 0.00 13 5 27.78 - - - FAM208B 0 genome.wustl.edu 37 10 5756146 5756146 + RNA SNP A A G TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 10 5756146 5756146 A G SNP FAM208B ENST00000463468 human ensembl 69_37n +1 known rna NULL NULL 0.254 - - - no_errors FAM208B HGNC ENSG00000108021 51 0 0.00 25 14 35.90 - - - FAM83B 0 genome.wustl.edu 37 6 54805818 54805818 + Silent SNP T T C TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 6 54805818 54805818 T C SNP FAM83B ENST00000306858 human ensembl 69_37n +1 known silent c.2049 p.Y683 1.000 NULL pfam_DUF1669 - no_errors FAM83B HGNC ENSG00000168143 53 0 0.00 30 19 38.78 - - - FBXL21 0 genome.wustl.edu 37 5 135276438 135276438 + RNA SNP T T C TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 5 135276438 135276438 T C SNP FBXL21 ENST00000467490 human ensembl 69_37n +1 known rna NULL NULL 0.001 - - - no_errors FBXL21 HGNC ENSG00000164616 30 0 0.00 20 3 13.04 - - - HMCN2 0 genome.wustl.edu 37 9 133266442 133266442 + RNA SNP C C T TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 9 133266442 133266442 C T SNP HMCN2 ENST00000487727 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors HMCN2 HGNC ENSG00000148357 8 0 0.00 4 4 50.00 - - - KRT16P1 0 genome.wustl.edu 37 17 18345128 18345128 + RNA SNP C C T TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 17 18345128 18345128 C T SNP KRT16P1 ENST00000581027 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors KRT16P1 HGNC ENSG00000214856 14 0 0.00 2 2 50.00 - - - LIMK1 0 genome.wustl.edu 37 7 73535625 73535625 + Silent SNP C C T TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 7 73535625 73535625 C T SNP LIMK1 ENST00000336180 human ensembl 69_37n +1 known silent c.1938 p.P646 0.275 NULL pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Znf_LIM,pfam_PDZ,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_PDZ,smart_Znf_LIM,smart_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_LIM,pfscan_PDZ,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors LIMK1 HGNC ENSG00000106683 24 0 0.00 12 8 40.00 - - - NOD1 0 genome.wustl.edu 37 7 30492497 30492498 + Frame_Shift_Del DEL CT CT - TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 CT CT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 7 30492497 30492498 CT - DEL NOD1 ENST00000222823 human ensembl 69_37n -1 known frame_shift_del c.536_535 p.S179fs 0.732:0.095 NULL pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD - no_errors NOD1 HGNC ENSG00000106100 50 0 0.00 26 23 46.94 - - - PCNXL2 0 genome.wustl.edu 37 1 233119951 233119951 + RNA SNP C C T TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 1 233119951 233119951 C T SNP PCNXL2 ENST00000462762 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors PCNXL2 HGNC ENSG00000135749 27 0 0.00 31 5 13.51 - - - SAMD11 0 genome.wustl.edu 37 1 879085 879085 + Missense_Mutation SNP G G T TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 1 879085 879085 G T SNP SAMD11 ENST00000342066 human ensembl 69_37n +1 known missense c.1697 p.R566M 1.000 pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM - no_errors SAMD11 HGNC ENSG00000187634 34 0 0.00 23 4 14.81 - - - SLC12A7 0 genome.wustl.edu 37 5 1075565 1075565 + Missense_Mutation SNP T T C TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 5 1075565 1075565 T C SNP SLC12A7 ENST00000264930 human ensembl 69_37n -1 known missense c.1888 p.M630V 1.000 pfam_AA-permease_dom,tigrfam_Na/K/Cl_cotransptS pfam_AA-permease_dom,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS - no_errors SLC12A7 HGNC ENSG00000113504 44 0 0.00 14 9 39.13 - - - SMG1 0 genome.wustl.edu 37 16 18877754 18877754 + RNA SNP A A G TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 16 18877754 18877754 A G SNP SMG1 ENST00000566328 human ensembl 69_37n -1 known rna NULL NULL 0.649 - - - no_errors SMG1 HGNC ENSG00000157106 55 0 0.00 35 4 10.26 - - - USP44 0 genome.wustl.edu 37 12 95926683 95926683 + Silent SNP G G T TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 12 95926683 95926683 G T SNP USP44 ENST00000258499 human ensembl 69_37n -1 known silent c.1350 p.I450 1.000 pfam_Peptidase_C19,pfscan_Peptidase_C19 pfam_Peptidase_C19,pfam_Znf_UBP,smart_Znf_UBP,pfscan_Znf_UBP,pfscan_Peptidase_C19 - no_errors USP44 HGNC ENSG00000136014 38 0 0.00 22 3 12.00 - - - USP5 0 genome.wustl.edu 37 12 6964624 6964624 + Silent SNP T T C TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e 12 6964624 6964624 T C SNP USP5 ENST00000229268 human ensembl 69_37n +1 known silent c.171 p.Y57 1.000 pirsf_Ubiquitinyl_hydrolase pfam_Peptidase_C19,pfam_UBA/transl_elong_EF1B_N,pfam_Znf_UBP,superfamily_UBA-like,smart_Znf_UBP,smart_UBA/transl_elong_EF1B_N_euk,pirsf_Ubiquitinyl_hydrolase,pfscan_UBA/transl_elong_EF1B_N_euk,pfscan_Znf_UBP,pfscan_Peptidase_C19 - no_errors USP5 HGNC ENSG00000111667 59 0 0.00 37 15 28.85 - - - VCX3B 0 genome.wustl.edu 37 X 8434192 8434193 + Frame_Shift_Ins INS - - C TCGA-A2-A4S0-01A-21D-A25Q-09 TCGA-A2-A4S0-10A-01D-A25Q-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9929b767-3bd5-4081-824c-f127623f2730 2a035c54-5e78-4f3a-8bb3-ad04e96d899e X 8434192 8434193 - C INS VCX3B ENST00000444481 human ensembl 69_37n +1 known frame_shift_ins c.419_420 p.E141fs 0.000:0.001 NULL NULL - no_errors VCX3B HGNC ENSG00000205642 36 0 0.00 9 2 18.18 - - -