Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All C11orf84 0 genome.wustl.edu 37 11 63585595 63585595 + Missense_Mutation SNP C C T TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 11 63585595 63585595 C T SNP C11orf84 ENST00000294244 human ensembl 69_37n +1 known missense c.446 p.P149L 0.001 NULL NULL - no_errors C11orf84 HGNC ENSG00000168005 40 0 0.00 37 9 19.57 - - - C17orf66 0 genome.wustl.edu 37 17 34182281 34182281 + Missense_Mutation SNP G G A TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 17 34182281 34182281 G A SNP C17orf66 ENST00000311880 human ensembl 69_37n -1 known missense c.1499 p.P500L 0.045 NULL superfamily_ARM-type_fold - no_errors C17orf66 HGNC ENSG00000172653 94 0 0.00 58 11 15.94 - - - CEP85 0 genome.wustl.edu 37 1 26581958 26581958 + Missense_Mutation SNP G G C TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 1 26581958 26581958 G C SNP CEP85 ENST00000252992 human ensembl 69_37n +1 known missense c.505 p.G169R 1.000 NULL NULL - no_errors CEP85 HGNC ENSG00000130695 56 0 0.00 52 14 21.21 - - - CLCN4 0 genome.wustl.edu 37 X 10180564 10180564 + Missense_Mutation SNP G G T TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d X 10180564 10180564 G T SNP CLCN4 ENST00000380833 human ensembl 69_37n +1 known missense c.1447 p.V483L 1.000 pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4 - no_errors CLCN4 HGNC ENSG00000073464 31 0 0.00 30 5 14.29 - - - COMMD9 0 genome.wustl.edu 37 11 36297762 36297762 + Silent SNP G G A TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 11 36297762 36297762 G A SNP COMMD9 ENST00000263401 human ensembl 69_37n -1 known silent c.381 p.D127 1.000 pfam_HCaRG pfam_HCaRG - no_errors COMMD9 HGNC ENSG00000110442 36 0 0.00 34 8 19.05 - - - EME1 0 genome.wustl.edu 37 17 48453257 48453257 + Missense_Mutation SNP G G C TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 17 48453257 48453257 G C SNP EME1 ENST00000393271 human ensembl 69_37n +1 known missense c.688 p.E230Q 0.001 NULL pfam_ERCC4_domain,smart_ERCC4_domain - no_errors EME1 HGNC ENSG00000154920 37 0 0.00 24 6 19.35 - - - FTHL17 0 genome.wustl.edu 37 X 31089761 31089761 + Missense_Mutation SNP C C A TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d X 31089761 31089761 C A SNP FTHL17 ENST00000359202 human ensembl 69_37n -1 known missense c.310 p.A104S 0.968 pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron - no_errors FTHL17 HGNC ENSG00000132446 25 0 0.00 29 22 43.14 - - - MAP2K4 0 genome.wustl.edu 37 17 11984671 11984672 + Splice_Site DEL AG AG - TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 17 11984671 11984672 AG - DEL MAP2K4 ENST00000415385 human ensembl 69_37n +1 known splice_site_del c.252-2_252-1 e4-1 1.000:1.000 - - - no_errors MAP2K4 HGNC ENSG00000065559 32 0 0.00 15 12 44.44 - - - MRPL38 0 genome.wustl.edu 37 17 73897305 73897305 + Nonsense_Mutation SNP C C T TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 17 73897305 73897305 C T SNP MRPL38 ENST00000309352 human ensembl 69_37n -1 known nonsense c.641 p.W214* 1.000 pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP - no_errors MRPL38 HGNC ENSG00000204316 27 0 0.00 28 7 20.00 - - - NCOR1 0 genome.wustl.edu 37 17 16012112 16012112 + Nonsense_Mutation SNP C C A TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 17 16012112 16012112 C A SNP NCOR1 ENST00000268712 human ensembl 69_37n -1 known nonsense c.2170 p.E724* 1.000 NULL pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom - no_errors NCOR1 HGNC ENSG00000141027 116 0 0.00 31 38 55.07 - - - OR6C65 0 genome.wustl.edu 37 12 55794527 55794527 + Missense_Mutation SNP C C T TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 12 55794527 55794527 C T SNP OR6C65 ENST00000379665 human ensembl 69_37n +1 known missense c.215 p.T72M 0.013 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR6C65 HGNC ENSG00000205328 67 0 0.00 49 11 18.33 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 60 0 0.00 30 19 38.78 - - - RNF183 0 genome.wustl.edu 37 9 116060076 116060076 + Missense_Mutation SNP G G A TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 9 116060076 116060076 G A SNP RNF183 ENST00000297894 human ensembl 69_37n -1 known missense c.389 p.P130L 0.002 NULL smart_Znf_RING,pfscan_Znf_RING - no_errors RNF183 HGNC ENSG00000165188 24 0 0.00 28 6 17.65 - - - SFMBT2 0 genome.wustl.edu 37 10 7409820 7409820 + Missense_Mutation SNP G G C TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 10 7409820 7409820 G C SNP SFMBT2 ENST00000361972 human ensembl 69_37n -1 known missense c.227 p.P76R 1.000 smart_Mbt,pfscan_Mbt pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt - no_errors SFMBT2 HGNC ENSG00000198879 42 0 0.00 48 11 18.64 - - - SLC25A47 0 genome.wustl.edu 37 14 100793566 100793566 + Silent SNP G G A TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 14 100793566 100793566 G A SNP SLC25A47 ENST00000361529 human ensembl 69_37n +1 known silent c.186 p.T62 0.000 pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier - no_errors SLC25A47 HGNC ENSG00000140107 43 0 0.00 39 28 41.79 - - - SMAD5 0 genome.wustl.edu 37 5 135489806 135489807 + Frame_Shift_Del DEL AG AG - TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 5 135489806 135489807 AG - DEL SMAD5 ENST00000545279 human ensembl 69_37n +1 known frame_shift_del c.357_358 p.E120fs 1.000:1.000 pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1 pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type - no_errors SMAD5 HGNC ENSG00000113658 69 0 0.00 72 10 12.20 - - - SULT1A4 0 genome.wustl.edu 37 16 29472811 29472811 + Silent SNP A A G TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 16 29472811 29472811 A G SNP SULT1A4 ENST00000565290 human ensembl 69_37n +1 known silent c.105 p.Q35 0.951 NULL pfam_Sulfotransferase_dom - no_errors SULT1A4 HGNC ENSG00000213648 10 0 0.00 1 3 75.00 - - - ZNF560 0 genome.wustl.edu 37 19 9577375 9577375 + Missense_Mutation SNP G G A TCGA-AC-A23E-01A-11D-A159-09 TCGA-AC-A23E-10A-01D-A159-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 137cb73f-394a-459a-83e6-0b3c85c955cd a0fb9995-ee0b-4181-87e9-414ead80647d 19 9577375 9577375 G A SNP ZNF560 ENST00000301480 human ensembl 69_37n -1 known missense c.2248 p.R750C 0.002 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF560 HGNC ENSG00000198028 70 0 0.00 62 13 17.33 - - -