Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ACTR2 0 genome.wustl.edu 37 2 65455000 65455000 + RNA SNP G G A TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 2 65455000 65455000 G A SNP ACTR2 ENST00000471552 human ensembl 69_37n +1 known rna NULL NULL 0.004 - - - no_errors ACTR2 HGNC ENSG00000138071 78 0 0.00 39 14 26.42 - - - ADAMTS17 0 genome.wustl.edu 37 15 100649205 100649205 + Missense_Mutation SNP C C T TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 15 100649205 100649205 C T SNP ADAMTS17 ENST00000268070 human ensembl 69_37n -1 known missense c.2005 p.G669S 1.000 prints_Peptidase_M12B_ADAM-TS pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTS17 HGNC ENSG00000140470 74 0 0.00 30 18 37.50 - - - COL6A2 0 genome.wustl.edu 37 21 47549113 47549113 + Missense_Mutation SNP C C T TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 21 47549113 47549113 C T SNP COL6A2 ENST00000357838 human ensembl 69_37n +1 known missense c.2465 p.A822V 0.193 NULL pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A - no_errors COL6A2 HGNC ENSG00000142173 18 0 0.00 16 10 38.46 - - - DHDH 0 genome.wustl.edu 37 19 49438313 49438313 + Silent SNP C C T TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 19 49438313 49438313 C T SNP DHDH ENST00000221403 human ensembl 69_37n +1 known silent c.147 p.H49 0.108 pfam_Oxidoreductase_N pfam_Oxidoreductase_N - no_errors DHDH HGNC ENSG00000104808 44 0 0.00 21 18 46.15 - - - EIF2C3 0 genome.wustl.edu 37 1 36509128 36509128 + Silent SNP C C T TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 1 36509128 36509128 C T SNP EIF2C3 ENST00000373191 human ensembl 69_37n +1 known silent c.2253 p.L751 1.000 pfam_Piwi,superfamily_RNaseH-like_dom,smart_Piwi,pfscan_Piwi pfam_Piwi,pfam_PAZ,pfam_DUF1785,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi - no_errors EIF2C3 HGNC ENSG00000126070 168 0 0.00 119 93 43.87 - - - FAM179A 0 genome.wustl.edu 37 2 29259479 29259479 + Missense_Mutation SNP G G A TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 2 29259479 29259479 G A SNP FAM179A ENST00000379558 human ensembl 69_37n +1 known missense c.2491 p.A831T 0.007 superfamily_ARM-type_fold pfam_CLASP_N_dom,superfamily_ARM-type_fold - no_errors FAM179A HGNC ENSG00000189350 166 0 0.00 91 38 29.46 - - - HTR5A 0 genome.wustl.edu 37 7 154862859 154862859 + Missense_Mutation SNP G G A TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 7 154862859 154862859 G A SNP HTR5A ENST00000287907 human ensembl 69_37n +1 known missense c.250 p.V84I 1.000 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT5A_rcpt,prints_5HT_rcpt - no_errors HTR5A HGNC ENSG00000157219 67 0 0.00 26 30 53.57 - - - LMBR1 0 genome.wustl.edu 37 7 156619309 156619309 + Silent SNP G G A TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 7 156619309 156619309 G A SNP LMBR1 ENST00000354505 human ensembl 69_37n -1 known silent c.309 p.S103 1.000 pfam_LMBR1-like_membr_prot pfam_LMBR1-like_membr_prot,prints_Lipcalin_1_rcpt - no_errors LMBR1 HGNC ENSG00000105983 116 0 0.00 85 45 34.35 - - - LPAR6 0 genome.wustl.edu 37 13 48986180 48986180 + Missense_Mutation SNP A A G TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 13 48986180 48986180 A G SNP LPAR6 ENST00000345941 human ensembl 69_37n -1 known missense c.380 p.L127P 0.985 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_P2Y5_purnocptor,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor - no_errors LPAR6 HGNC ENSG00000139679 67 0 0.00 18 25 58.14 - - - MIR1284 0 genome.wustl.edu 37 3 71591235 71591235 + RNA SNP C C G TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 3 71591235 71591235 C G SNP MIR1284 ENST00000408337 human ensembl 69_37n -1 known rna NULL NULL 1.000 - - - no_errors MIR1284 HGNC ENSG00000221264 29 0 0.00 25 14 35.90 - - - PCSK5 0 genome.wustl.edu 37 9 78790207 78790207 + Silent SNP C C A TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 9 78790207 78790207 C A SNP PCSK5 ENST00000376767 human ensembl 69_37n +1 known silent c.2062 p.R688 0.000 NULL pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Prot_inh_propept,prints_Peptidase_S8_subtilisin-rel - no_errors PCSK5 HGNC ENSG00000099139 10 0 0.00 13 6 31.58 - - - POLR2F 0 genome.wustl.edu 37 22 38349806 38349806 + Missense_Mutation SNP C C A TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 22 38349806 38349806 C A SNP POLR2F ENST00000442738 human ensembl 69_37n +1 known missense c.12 p.N4K 1.000 superfamily_RNA_poly_omega/K/RPABC2 pfam_RNA_poly_omega/K/RPABC2,superfamily_RNA_poly_omega/K/RPABC2 - no_errors POLR2F HGNC ENSG00000100142 84 0 0.00 26 31 54.39 - - - RPL4 0 genome.wustl.edu 37 15 66795050 66795050 + Silent SNP G G A TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 15 66795050 66795050 G A SNP RPL4 ENST00000307961 human ensembl 69_37n -1 known silent c.321 p.T107 0.939 pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom pfam_Ribosomal_L4/L1e,superfamily_Ribosomal_L4_dom - no_errors RPL4 HGNC ENSG00000174444 229 0 0.00 185 114 38.13 - - - SKIDA1 0 genome.wustl.edu 37 10 21805480 21805480 + Silent SNP T T C TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 10 21805480 21805480 T C SNP SKIDA1 ENST00000449193 human ensembl 69_37n -1 known silent c.1272 p.E424 0.381 NULL pfam_Transform_Ski,superfamily_DNA-bd_dom_put - no_errors SKIDA1 HGNC ENSG00000180592 20 0 0.00 20 6 23.08 - - - TMED4 0 genome.wustl.edu 37 7 44621754 44621754 + Silent SNP G G A TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 7 44621754 44621754 G A SNP TMED4 ENST00000457408 human ensembl 69_37n -1 known silent c.52 p.L18 0.418 NULL pfam_GOLD,pfscan_GOLD - no_errors TMED4 HGNC ENSG00000158604 14 0 0.00 11 5 31.25 - - - TP53 0 genome.wustl.edu 37 17 7578555 7578555 + Splice_Site SNP C C T TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 17 7578555 7578555 C T SNP TP53 ENST00000269305 human ensembl 69_37n -1 known splice_site c.376-1 e4-1 1.000 - - - no_errors TP53 HGNC ENSG00000141510 92 0 0.00 10 33 76.74 - - - TREM1 0 genome.wustl.edu 37 6 41243863 41243863 + Silent SNP C C T TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 6 41243863 41243863 C T SNP TREM1 ENST00000244709 human ensembl 69_37n -1 known silent c.705 p.*235 0.022 NULL pfam_Ig_V-set,smart_Ig_sub - no_errors TREM1 HGNC ENSG00000124731 193 0 0.00 120 58 32.58 - - - TULP3 0 genome.wustl.edu 37 12 3040249 3040249 + Missense_Mutation SNP A A G TCGA-AN-A0XT-01A-11D-A10G-09 TCGA-AN-A0XT-10A-01D-A10G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 353d9161-95fd-4bec-abb7-859d9ee19785 447c5906-5e0a-48f1-acaf-80ea46081efd 12 3040249 3040249 A G SNP TULP3 ENST00000228245 human ensembl 69_37n +1 known missense c.539 p.N180S 0.000 superfamily_Tubby_C-like pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N - no_errors TULP3 HGNC ENSG00000078246 119 0 0.00 90 76 45.78 - - -