Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADD3 0 genome.wustl.edu 37 10 111892110 111892110 + Missense_Mutation SNP A A T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 10 111892110 111892110 A T SNP ADD3 ENST00000356080 human ensembl 69_37n +1 known missense c.1780 p.I594F 1.000 NULL pfam_Aldolase_II/adducin_N,superfamily_Aldolase_II/adducin_N - no_errors ADD3 HGNC ENSG00000148700 184 0 0.00 167 88 34.51 - - - C4orf40 0 genome.wustl.edu 37 4 71024598 71024598 + Missense_Mutation SNP C C A TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 4 71024598 71024598 C A SNP C4orf40 ENST00000344526 human ensembl 69_37n +1 known missense c.629 p.P210H 0.000 NULL NULL - no_errors C4orf40 HGNC ENSG00000187533 23 0 0.00 20 4 16.67 - - - CDCA4 0 genome.wustl.edu 37 14 105477579 105477579 + Missense_Mutation SNP C C T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 14 105477579 105477579 C T SNP CDCA4 ENST00000336219 human ensembl 69_37n -1 known missense c.688 p.E230K 1.000 NULL pfam_SERTA,pfscan_SERTA - no_errors CDCA4 HGNC ENSG00000170779 24 0 0.00 14 10 40.00 - - - HELQ 0 genome.wustl.edu 37 4 84368010 84368010 + Missense_Mutation SNP A A T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 4 84368010 84368010 A T SNP HELQ ENST00000295488 human ensembl 69_37n -1 known missense c.1370 p.L457Q 1.000 pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,superfamily_DNA_repair_Rad51/TF_NusA_a-hlx,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors HELQ HGNC ENSG00000163312 179 0 0.00 132 81 37.67 - - - HRNR 0 genome.wustl.edu 37 1 152189237 152189237 + Missense_Mutation SNP C C G TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 1 152189237 152189237 C G SNP HRNR ENST00000368801 human ensembl 69_37n -1 known missense c.4868 p.S1623T 0.000 NULL pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2 - no_errors HRNR HGNC ENSG00000197915 12 0 0.00 5 3 37.50 - - - ICOS 0 genome.wustl.edu 37 2 204820385 204820385 + Missense_Mutation SNP G G A TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 2 204820385 204820385 G A SNP ICOS ENST00000316386 human ensembl 69_37n +1 known missense c.85 p.E29K 0.072 NULL NULL - no_errors ICOS HGNC ENSG00000163600 122 0 0.00 119 20 14.29 - - - IPO11 0 genome.wustl.edu 37 5 61781290 61781290 + Splice_Site SNP G G T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 5 61781290 61781290 G T SNP IPO11 ENST00000409296 human ensembl 69_37n +1 known splice_site c.1338+1 e12+1 1.000 - - - no_errors IPO11 HGNC ENSG00000086200 252 0 0.00 129 59 31.38 - - - KCNK9 0 genome.wustl.edu 37 8 140631062 140631062 + Silent SNP G G A TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 8 140631062 140631062 G A SNP KCNK9 ENST00000303015 human ensembl 69_37n -1 known silent c.564 p.H188 1.000 pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK pfam_Ion_trans_2,pirsf_2pore_dom_K_chnl_TASK/TWIK,prints_2pore_dom_K_chnl_TASK,prints_2pore_dom_K_chnl_TASK3,prints_2pore_dom_K_chnl - no_errors KCNK9 HGNC ENSG00000169427 75 0 0.00 45 21 31.82 - - - MAGEE1 0 genome.wustl.edu 37 X 75649280 75649280 + Silent SNP C C T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb X 75649280 75649280 C T SNP MAGEE1 ENST00000361470 human ensembl 69_37n +1 known silent c.957 p.S319 0.000 NULL pfam_MAGE,pfscan_MAGE - no_errors MAGEE1 HGNC ENSG00000198934 12 0 0.00 5 6 54.55 - - - MYO7B 0 genome.wustl.edu 37 2 128364879 128364879 + Silent SNP C C A TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 2 128364879 128364879 C A SNP MYO7B ENST00000389524 human ensembl 69_37n +1 known silent c.2523 p.A841 0.566 pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_SH3_2,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_Band_41_domain,smart_SH3_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_SH3_domain,prints_Myosin_head_motor_dom - no_errors MYO7B HGNC ENSG00000169994 33 0 0.00 30 4 11.76 - - - OBFC1 0 genome.wustl.edu 37 10 105657473 105657473 + Missense_Mutation SNP G G T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 10 105657473 105657473 G T SNP OBFC1 ENST00000224950 human ensembl 69_37n -1 known missense c.586 p.P196T 0.978 pfam_DUF1879_CST_STN1,pirsf_CST_STN1 pfam_DUF1879_CST_STN1,pfam_NA-bd_OB_tRNA-helicase,superfamily_NA-bd_OB-fold-like,pirsf_CST_STN1 - no_errors OBFC1 HGNC ENSG00000107960 110 0 0.00 59 46 43.81 - - - OR13G1 0 genome.wustl.edu 37 1 247836219 247836219 + Missense_Mutation SNP A A C TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 1 247836219 247836219 A C SNP OR13G1 ENST00000359688 human ensembl 69_37n -1 known missense c.125 p.I42S 0.058 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam - no_errors OR13G1 HGNC ENSG00000197437 97 0 0.00 65 31 32.29 - - - PDP2 0 genome.wustl.edu 37 16 66918915 66918915 + Missense_Mutation SNP C C T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 16 66918915 66918915 C T SNP PDP2 ENST00000311765 human ensembl 69_37n +1 known missense c.728 p.S243L 1.000 pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like - no_errors PDP2 HGNC ENSG00000172840 36 0 0.00 12 24 66.67 - - - PIK3CA 0 genome.wustl.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 3 178936091 178936091 G A SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1633 p.E545K 1.000 pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 173 0 0.00 116 56 32.37 - - - PNCK 0 genome.wustl.edu 37 X 152936838 152936838 + Silent SNP C C T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb X 152936838 152936838 C T SNP PNCK ENST00000370142 human ensembl 69_37n -1 known silent c.585 p.A195 0.017 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors PNCK HGNC ENSG00000130822 48 0 0.00 34 15 30.61 - - - PPIL2 0 genome.wustl.edu 37 22 22049730 22049730 + Missense_Mutation SNP T T C TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 22 22049730 22049730 T C SNP PPIL2 ENST00000412327 human ensembl 69_37n +1 known missense c.1510 p.C504R 0.000 NULL pfam_Cyclophilin-like_PPIase_dom,superfamily_Cyclophilin-like_PPIase_dom,smart_Ubox_domain,pfscan_Cyclophilin-like_PPIase_dom,prints_Cyclophilin-like_PPIase_dom - no_errors PPIL2 HGNC ENSG00000100023 54 0 0.00 38 29 43.28 - - - PPM1F 0 genome.wustl.edu 37 22 22300420 22300420 + Missense_Mutation SNP T T C TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 22 22300420 22300420 T C SNP PPM1F ENST00000263212 human ensembl 69_37n -1 known missense c.1 p.M1V 0.938 NULL pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like - no_errors PPM1F HGNC ENSG00000100034 40 0 0.00 26 13 32.50 - - - RERE 0 genome.wustl.edu 37 1 8421526 8421526 + Missense_Mutation SNP A A G TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 1 8421526 8421526 A G SNP RERE ENST00000337907 human ensembl 69_37n -1 known missense c.2041 p.S681P 0.998 pfam_Atrophin-like pfam_Atrophin-like,pfam_BAH_dom,pfam_ELM2_dom,pfam_Znf_GATA,superfamily_Homeodomain-like,smart_BAH_dom,smart_SANT/Myb,smart_Znf_GATA,pfscan_BAH_dom,pfscan_ELM2_dom - no_errors RERE HGNC ENSG00000142599 195 0 0.00 134 71 34.63 - - - SHANK2 0 genome.wustl.edu 37 11 70331577 70331577 + Silent SNP G G A TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 11 70331577 70331577 G A SNP SHANK2 ENST00000338508 human ensembl 69_37n -1 known silent c.4824 p.D1608 0.026 NULL pfam_SAM_type1,pfam_SAM_2,pfam_SH3_2,pfam_PDZ,pfam_SH3_domain,superfamily_Ankyrin_rpt-contain_dom,superfamily_PDZ,superfamily_SAM/pointed,superfamily_SH3_domain,smart_Ankyrin_rpt,smart_SH3_domain,smart_PDZ,smart_SAM,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_PDZ,pfscan_SAM,pfscan_SH3_domain - no_errors SHANK2 HGNC ENSG00000162105 83 0 0.00 158 37 18.88 - - - SPINK5 0 genome.wustl.edu 37 5 147505286 147505286 + Missense_Mutation SNP G G T TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 5 147505286 147505286 G T SNP SPINK5 ENST00000359874 human ensembl 69_37n +1 known missense c.2830 p.D944Y 0.981 NULL pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal - no_errors SPINK5 HGNC ENSG00000133710 137 1 0.72 91 55 37.16 - - - ZNF71 0 genome.wustl.edu 37 19 57133612 57133612 + Missense_Mutation SNP C C A TCGA-AO-A126-01A-11D-A10M-09 TCGA-AO-A126-10A-01D-A10M-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 85b39644-6f19-40dc-94c1-0afc93ee4981 329950fe-6d8e-4e48-85c8-f963868375bb 19 57133612 57133612 C A SNP ZNF71 ENST00000328070 human ensembl 69_37n +1 known missense c.957 p.N319K 0.039 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF71 HGNC ENSG00000197951 79 0 0.00 57 31 35.23 - - -