Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AFF3 0 genome.wustl.edu 37 2 100170901 100170901 + Missense_Mutation SNP G G A TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 2 100170901 100170901 G A SNP AFF3 ENST00000356421 human ensembl 69_37n -1 known missense c.3506 p.P1169L 0.994 pfam_TF_AF4/FMR2 pfam_TF_AF4/FMR2 - no_errors AFF3 HGNC ENSG00000144218 96 0 0.00 40 36 47.37 - - - ASB5 0 genome.wustl.edu 37 4 177190238 177190238 + Missense_Mutation SNP G G C TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 4 177190238 177190238 G C SNP ASB5 ENST00000296525 human ensembl 69_37n -1 known missense c.22 p.R8G 0.997 NULL pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt - no_errors ASB5 HGNC ENSG00000164122 38 0 0.00 36 34 48.57 - - - CACNA1F 0 genome.wustl.edu 37 X 49082871 49082871 + Missense_Mutation SNP A A T TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c X 49082871 49082871 A T SNP CACNA1F ENST00000376265 human ensembl 69_37n -1 known missense c.1496 p.L499Q 0.691 NULL pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su - no_errors CACNA1F HGNC ENSG00000102001 124 0 0.00 14 11 42.31 - - - CLSTN3 0 genome.wustl.edu 37 12 7293852 7293852 + Silent SNP G G A TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 12 7293852 7293852 G A SNP CLSTN3 ENST00000266546 human ensembl 69_37n +1 known silent c.1338 p.E446 0.997 superfamily_ConA-like_lec_gl pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CLSTN3 HGNC ENSG00000139182 262 0 0.00 29 27 48.21 - - - CMYA5 0 genome.wustl.edu 37 5 79033437 79033437 + Missense_Mutation SNP G G T TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 5 79033437 79033437 G T SNP CMYA5 ENST00000446378 human ensembl 69_37n +1 known missense c.8849 p.G2950V 1.000 NULL pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3 - no_errors CMYA5 HGNC ENSG00000164309 24 0 0.00 22 9 29.03 - - - CROCCP2 0 genome.wustl.edu 37 1 16950807 16950807 + RNA SNP C C T TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 1 16950807 16950807 C T SNP CROCCP2 ENST00000421700 human ensembl 69_37n -1 known rna NULL NULL 0.483 - - - no_errors CROCCP2 HGNC ENSG00000215908 8 0 0.00 3 10 76.92 - - - DNAH17 0 genome.wustl.edu 37 17 76501415 76501415 + Missense_Mutation SNP T T G TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 17 76501415 76501415 T G SNP DNAH17 ENST00000389840 human ensembl 69_37n -1 known missense c.4904 p.E1635A 1.000 pfam_Dynein_heavy_dom-2 pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd - no_errors DNAH17 HGNC ENSG00000187775 42 0 0.00 33 27 44.26 - - - DPY19L4 0 genome.wustl.edu 37 8 95796032 95796032 + Splice_Site SNP T T A TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 8 95796032 95796032 T A SNP DPY19L4 ENST00000414645 human ensembl 69_37n +1 known splice_site c.1848+2 e17+2 1.000 - - - no_errors DPY19L4 HGNC ENSG00000156162 43 0 0.00 117 63 35.00 - - - DYRK3 0 genome.wustl.edu 37 1 206810308 206810308 + Silent SNP A A G TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 1 206810308 206810308 A G SNP DYRK3 ENST00000367106 human ensembl 69_37n +1 known silent c.12 p.K4 0.001 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors DYRK3 HGNC ENSG00000143479 82 0 0.00 101 122 54.71 - - - FGF6 0 genome.wustl.edu 37 12 4554416 4554416 + Silent SNP G G A TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 12 4554416 4554416 G A SNP FGF6 ENST00000228837 human ensembl 69_37n -1 known silent c.321 p.S107 1.000 pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_GF_heparin-bd,prints_IL1_HBGF - no_errors FGF6 HGNC ENSG00000111241 32 0 0.00 15 5 23.81 - - - FRYL 0 genome.wustl.edu 37 4 48542474 48542474 + Missense_Mutation SNP A A C TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 4 48542474 48542474 A C SNP FRYL ENST00000358350 human ensembl 69_37n -1 known missense c.6191 p.L2064R 1.000 superfamily_ARM-type_fold superfamily_ARM-type_fold - no_errors FRYL HGNC ENSG00000075539 23 0 0.00 35 36 50.70 - - - KIF1B 0 genome.wustl.edu 37 1 10386254 10386254 + Missense_Mutation SNP A A G TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 1 10386254 10386254 A G SNP KIF1B ENST00000263934 human ensembl 69_37n +1 known missense c.2623 p.T875A 1.000 NULL pfam_Kinesin_motor_dom,pfam_Kinesin-like,pfam_Pleckstrin_homology,pfam_KIF1B,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,smart_Pleckstrin_homology,pfscan_FHA_dom,pfscan_Pleckstrin_homology,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom - no_errors KIF1B HGNC ENSG00000054523 86 0 0.00 6 49 87.50 - - - KRTAP23-1 0 genome.wustl.edu 37 21 31720857 31720857 + Missense_Mutation SNP C C T TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 21 31720857 31720857 C T SNP KRTAP23-1 ENST00000334160 human ensembl 69_37n -1 known missense c.68 p.G23D 0.000 pfam_PMG pfam_PMG - no_errors KRTAP23-1 HGNC ENSG00000186980 180 0 0.00 60 47 43.93 - - - LAMA1 0 genome.wustl.edu 37 18 6959369 6959369 + Silent SNP C C T TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 18 6959369 6959369 C T SNP LAMA1 ENST00000389658 human ensembl 69_37n -1 known silent c.7749 p.A2583 0.001 pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N - no_errors LAMA1 HGNC ENSG00000101680 41 0 0.00 37 19 33.93 - - - MUC4 0 genome.wustl.edu 37 3 195508115 195508115 + Missense_Mutation SNP T T G TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 3 195508115 195508115 T G SNP MUC4 ENST00000463781 human ensembl 69_37n -1 known missense c.10336 p.T3446P 0.077 NULL pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom - no_errors MUC4 HGNC ENSG00000145113 35 0 0.00 764 137 14.92 - - - OTUD4 0 genome.wustl.edu 37 4 146059245 146059245 + Silent SNP C C T TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 4 146059245 146059245 C T SNP OTUD4 ENST00000447906 human ensembl 69_37n -1 known silent c.2682 p.L894 1.000 NULL pfam_OTU,pfscan_OTU - no_errors OTUD4 HGNC ENSG00000164164 19 0 0.00 26 23 46.94 - - - PCDHA4 0 genome.wustl.edu 37 5 140188293 140188293 + Silent SNP C C T TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 5 140188293 140188293 C T SNP PCDHA4 ENST00000530339 human ensembl 69_37n +1 known silent c.1521 p.Y507 0.999 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors PCDHA4 HGNC ENSG00000204967 22 0 0.00 10 9 47.37 - - - POTEF 0 genome.wustl.edu 37 2 130832835 130832835 + Missense_Mutation SNP C C T TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 2 130832835 130832835 C T SNP POTEF ENST00000357462 human ensembl 69_37n -1 known missense c.2210 p.R737H 1.000 pfam_Actin-like,smart_Actin-like pfam_Actin-like,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Actin-like,prints_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors POTEF HGNC ENSG00000196604 42 0 0.00 37 34 47.89 - - - RBBP5 0 genome.wustl.edu 37 1 205073004 205073004 + Missense_Mutation SNP G G A TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 1 205073004 205073004 G A SNP RBBP5 ENST00000264515 human ensembl 69_37n -1 known missense c.503 p.T168M 1.000 NULL pfam_WD40_repeat,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors RBBP5 HGNC ENSG00000117222 127 0 0.00 155 58 27.23 - - - SLC9A5 0 genome.wustl.edu 37 16 67289834 67289834 + Splice_Site SNP G G A TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 16 67289834 67289834 G A SNP SLC9A5 ENST00000299798 human ensembl 69_37n +1 known splice_site c.911+1 e5+1 1.000 - - - no_errors SLC9A5 HGNC ENSG00000135740 21 0 0.00 2 6 75.00 - - - SYNPO2L 0 genome.wustl.edu 37 10 75406951 75406951 + Missense_Mutation SNP A A G TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 10 75406951 75406951 A G SNP SYNPO2L ENST00000394810 human ensembl 69_37n -1 known missense c.2459 p.F820S 1.000 NULL pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors SYNPO2L HGNC ENSG00000166317 27 0 0.00 5 8 61.54 - - - UHRF1BP1L 0 genome.wustl.edu 37 12 100482869 100482869 + Missense_Mutation SNP G G A TCGA-AO-A1KP-01A-11D-A13L-09 TCGA-AO-A1KP-10A-01W-A14R-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bc36db60-3f6b-42c4-b03e-b7c74c3dda5c ca375523-be3b-4d91-a319-227b0c988d7c 12 100482869 100482869 G A SNP UHRF1BP1L ENST00000279907 human ensembl 69_37n -1 known missense c.845 p.S282F 0.999 NULL NULL - no_errors UHRF1BP1L HGNC ENSG00000111647 40 0 0.00 30 41 57.75 - - -