Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADCY3 0 genome.wustl.edu 37 2 25047329 25047329 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 2 25047329 25047329 C T SNP ADCY3 ENST00000260600 human ensembl 69_37n -1 known missense c.2654 p.R885Q 1.000 smart_A/G_cyclase pfam_A/G_cyclase,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase - no_errors ADCY3 HGNC ENSG00000138031 172 0 0.00 50 8 13.79 - - - ANAPC5 0 genome.wustl.edu 37 12 121747576 121747576 + Missense_Mutation SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 12 121747576 121747576 G A SNP ANAPC5 ENST00000261819 human ensembl 69_37n -1 known missense c.1984 p.R662C 0.999 NULL smart_TPR_repeat - no_errors ANAPC5 HGNC ENSG00000089053 53 0 0.00 14 6 30.00 - - - ANGEL2 0 genome.wustl.edu 37 1 213174228 213174228 + Silent SNP C C A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 1 213174228 213174228 C A SNP ANGEL2 ENST00000366962 human ensembl 69_37n -1 known silent c.1161 p.R387 1.000 pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase pfam_Endo/exonuclease/phosphatase,superfamily_Endo/exonuclease/phosphatase - no_errors ANGEL2 HGNC ENSG00000174606 298 0 0.00 24 4 14.29 - - - ANKRD17 0 genome.wustl.edu 37 4 73957689 73957689 + Missense_Mutation SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 4 73957689 73957689 G A SNP ANKRD17 ENST00000358602 human ensembl 69_37n -1 known missense c.5656 p.P1886S 1.000 NULL pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt - no_errors ANKRD17 HGNC ENSG00000132466 298 0 0.00 61 8 11.59 - - - ARID5B 0 genome.wustl.edu 37 10 63662061 63662061 + Silent SNP G G C TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 10 63662061 63662061 G C SNP ARID5B ENST00000279873 human ensembl 69_37n +1 known silent c.165 p.A55 1.000 NULL pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd - no_errors ARID5B HGNC ENSG00000150347 201 0 0.00 28 17 37.78 - - - BRCA2 0 genome.wustl.edu 37 13 32921032 32921032 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 13 32921032 32921032 C T SNP BRCA2 ENST00000380152 human ensembl 69_37n +1 known missense c.7006 p.R2336C 0.118 pirsf_DNA_recomb/repair_BRCA2 pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat - no_errors BRCA2 HGNC ENSG00000139618 461 0 0.00 64 11 14.67 - - - BRIX1 0 genome.wustl.edu 37 5 34925371 34925371 + Missense_Mutation SNP G G C TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 5 34925371 34925371 G C SNP BRIX1 ENST00000336767 human ensembl 69_37n +1 known missense c.833 p.R278T 0.936 NULL pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix - no_errors BRIX1 HGNC ENSG00000113460 81 0 0.00 9 7 43.75 - - - CCNB3 0 genome.wustl.edu 37 X 50052008 50052008 + Frame_Shift_Del DEL C C - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 X 50052008 50052008 C - DEL CCNB3 ENST00000276014 human ensembl 69_37n +1 known frame_shift_del c.839 p.H281fs 0.002 NULL pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like - no_errors CCNB3 HGNC ENSG00000147082 88 0 0.00 17 2 10.53 - - - CDK19 0 genome.wustl.edu 37 6 110948277 110948277 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 6 110948277 110948277 C T SNP CDK19 ENST00000368911 human ensembl 69_37n -1 known missense c.718 p.D240N 1.000 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors CDK19 HGNC ENSG00000155111 407 0 0.00 47 23 32.86 - - - CDS1 0 genome.wustl.edu 37 4 85525478 85525478 + Missense_Mutation SNP G G C TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 4 85525478 85525478 G C SNP CDS1 ENST00000295887 human ensembl 69_37n +1 known missense c.200 p.R67T 1.000 pirsf_PC_Trfase_euk pfam_PC_trans,pirsf_PC_Trfase_euk - no_errors CDS1 HGNC ENSG00000163624 367 0 0.00 42 13 23.64 - - - CHD3 0 genome.wustl.edu 37 17 7796726 7796726 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 17 7796726 7796726 C T SNP CHD3 ENST00000330494 human ensembl 69_37n +1 known missense c.632 p.A211V 1.000 superfamily_HMG_superfamily pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow - no_errors CHD3 HGNC ENSG00000170004 54 0 0.00 21 7 25.00 - - - CMYA5 0 genome.wustl.edu 37 5 79084809 79084809 + Missense_Mutation SNP C C G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 5 79084809 79084809 C G SNP CMYA5 ENST00000446378 human ensembl 69_37n +1 known missense c.11571 p.I3857M 0.993 superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3 - no_errors CMYA5 HGNC ENSG00000164309 304 0 0.00 26 5 16.13 - - - COL12A1 0 genome.wustl.edu 37 6 75893090 75893090 + Missense_Mutation SNP T T G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 6 75893090 75893090 T G SNP COL12A1 ENST00000322507 human ensembl 69_37n -1 known missense c.1567 p.M523L 1.000 pfam_VWF_A,smart_VWF_A,pfscan_VWF_A pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A - no_errors COL12A1 HGNC ENSG00000111799 199 0 0.00 37 9 19.57 - - - COL1A2 0 genome.wustl.edu 37 7 94056944 94056944 + Silent SNP C C A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 7 94056944 94056944 C A SNP COL1A2 ENST00000297268 human ensembl 69_37n +1 known silent c.3273 p.P1091 0.998 pfam_Collagen pfam_Collagen,pfam_Fib_collagen_C,superfamily_Fibrinogen_a/b/g_C,smart_Fib_collagen_C - no_errors COL1A2 HGNC ENSG00000164692 134 0 0.00 29 10 25.64 - - - CYP2A13 0 genome.wustl.edu 37 19 41594877 41594877 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 19 41594877 41594877 C T SNP CYP2A13 ENST00000330436 human ensembl 69_37n +1 known missense c.224 p.P75L 0.000 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP2A-like,prints_Cyt_P450,prints_Cyt_P450_E_grp-IV - no_errors CYP2A13 HGNC ENSG00000197838 137 0 0.00 53 10 15.87 - - - DMXL2 0 genome.wustl.edu 37 15 51766785 51766785 + Nonstop_Mutation SNP C C G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 15 51766785 51766785 C G SNP DMXL2 ENST00000560891 human ensembl 69_37n -1 novel nonstop c.1343 p.*448S 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region DMXL2 HGNC ENSG00000104093 215 0 0.00 21 9 30.00 - - - DOCK11 0 genome.wustl.edu 37 X 117679333 117679333 + Missense_Mutation SNP A A T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 X 117679333 117679333 A T SNP DOCK11 ENST00000276202 human ensembl 69_37n +1 known missense c.440 p.D147V 1.000 NULL pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors DOCK11 HGNC ENSG00000147251 322 0 0.00 43 15 25.86 - - - DUOX2 0 genome.wustl.edu 37 15 45392973 45392973 + Silent SNP C C G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 15 45392973 45392973 C G SNP DUOX2 ENST00000389039 human ensembl 69_37n -1 known silent c.2985 p.L995 0.931 NULL pfam_Haem_peroxidase_animal,pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_EF-hand,superfamily_Haem_peroxidase,superfamily_Riboflavin_synthase-like_b-brl,smart_EF_hand_Ca-bd,prints_Haem_peroxidase_animal_subgr,prints_Recoverin,pfscan_EF_HAND_2,pfscan_Haem_peroxidase_animal - no_errors DUOX2 HGNC ENSG00000140279 345 0 0.00 37 21 36.21 - - - DYNC1I1 0 genome.wustl.edu 37 7 95668673 95668673 + Missense_Mutation SNP C C A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 7 95668673 95668673 C A SNP DYNC1I1 ENST00000324972 human ensembl 69_37n +1 known missense c.1500 p.D500E 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom pfam_Dynein_IC_1/2,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom - no_errors DYNC1I1 HGNC ENSG00000158560 166 0 0.00 44 6 12.00 - - - IGHV3-7 0 genome.wustl.edu 37 14 106518523 106518523 + Missense_Mutation SNP C C A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 14 106518523 106518523 C A SNP IGHV3-7 ENST00000390598 human ensembl 69_37n -1 known missense c.228 p.E76D 0.000 pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like - no_stop_codon IGHV3-7 HGNC ENSG00000211938 441 1 0.23 113 24 17.52 - - - IGSF10 0 genome.wustl.edu 37 3 151160895 151160895 + Missense_Mutation SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 3 151160895 151160895 G A SNP IGSF10 ENST00000282466 human ensembl 69_37n -1 known missense c.5840 p.S1947F 0.999 pfam_Ig_I-set,pfscan_Ig-like pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like - no_errors IGSF10 HGNC ENSG00000152580 274 0 0.00 60 19 24.05 - - - KCNN3 0 genome.wustl.edu 37 1 154842243 154842243 + Silent SNP A A C TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 1 154842243 154842243 A C SNP KCNN3 ENST00000271915 human ensembl 69_37n -1 known silent c.198 p.L66 0.000 NULL pfam_K_chnl_Ca-activ_SK,pfam_CaM-bd_dom,pfam_Ion_trans_2,superfamily_CaM-bd_dom,prints_K_chnl_Ca-activ_SK - no_errors KCNN3 HGNC ENSG00000143603 21 0 0.00 22 6 21.43 - - - LACTB2 0 genome.wustl.edu 37 8 71581315 71581315 + Missense_Mutation SNP C C G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 8 71581315 71581315 C G SNP LACTB2 ENST00000276590 human ensembl 69_37n -1 known missense c.41 p.R14P 1.000 NULL pfam_Beta-lactamas-like,smart_Beta-lactamas-like - no_errors LACTB2 HGNC ENSG00000147592 20 0 0.00 6 4 40.00 - - - LCTL 0 genome.wustl.edu 37 15 66853439 66853439 + Frame_Shift_Del DEL C C - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 15 66853439 66853439 C - DEL LCTL ENST00000341509 human ensembl 69_37n -1 known frame_shift_del c.610 p.A204fs 1.000 pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1 - no_errors LCTL HGNC ENSG00000188501 67 0 0.00 16 2 11.11 - - - LENG1 0 genome.wustl.edu 37 19 54660722 54660722 + Silent SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 19 54660722 54660722 G A SNP LENG1 ENST00000222224 human ensembl 69_37n -1 known silent c.354 p.G118 1.000 NULL NULL - no_errors LENG1 HGNC ENSG00000105617 80 0 0.00 30 4 11.76 - - - LPCAT1 0 genome.wustl.edu 37 5 1463930 1463930 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 5 1463930 1463930 C T SNP LPCAT1 ENST00000283415 human ensembl 69_37n -1 known missense c.1441 p.E481K 0.472 smart_EF_hand_Ca-bd,pfscan_EF_HAND_2 pfam_Acyltransferase,smart_Acyltransferase,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2 - no_errors LPCAT1 HGNC ENSG00000153395 198 0 0.00 76 27 26.21 - - - MC5R 0 genome.wustl.edu 37 18 13826448 13826448 + Silent SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 18 13826448 13826448 G A SNP MC5R ENST00000324750 human ensembl 69_37n +1 known silent c.684 p.A228 0.998 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melancort_rcpt_5 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Melancort_rcpt_5,prints_Melcrt_ACTH_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Melancort_rcpt - no_errors MC5R HGNC ENSG00000176136 166 0 0.00 61 13 17.57 - - - MPP2 0 genome.wustl.edu 37 17 41960570 41960570 + Splice_Site SNP C C A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 17 41960570 41960570 C A SNP MPP2 ENST00000461854 human ensembl 69_37n -1 known splice_site c.375+1 e4+1 1.000 - - - no_errors MPP2 HGNC ENSG00000108852 25 0 0.00 13 5 27.78 - - - MSR1 0 genome.wustl.edu 37 8 16007748 16007748 + Frame_Shift_Del DEL C C - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 8 16007748 16007748 C - DEL MSR1 ENST00000262101 human ensembl 69_37n -1 known frame_shift_del c.971 p.G324fs 0.784 pfam_Collagen pfam_Srcr_rcpt,pfam_Macro_scav_rcpt,pfam_Collagen,superfamily_Srcr_rcpt-rel,superfamily_STAT_TF_coiled-coil,smart_Srcr_rcpt-rel,prints_Macro_scav_rcpt,prints_Srcr_rcpt,pfscan_Srcr_rcpt - no_errors MSR1 HGNC ENSG00000038945 58 0 0.00 16 2 11.11 - - - MTCP1NB 0 genome.wustl.edu 37 X 154290173 154290173 + Nonsense_Mutation SNP G G T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 X 154290173 154290173 G T SNP MTCP1NB ENST00000369479 human ensembl 69_37n -1 known nonsense c.152 p.S51* 1.000 pfam_MTCP1,superfamily_MTCP1 pfam_MTCP1,superfamily_MTCP1 - no_errors MTCP1NB HGNC ENSG00000182712 408 1 0.24 51 12 19.05 - - - MYH7 0 genome.wustl.edu 37 14 23894170 23894170 + Missense_Mutation SNP C C A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 14 23894170 23894170 C A SNP MYH7 ENST00000355349 human ensembl 69_37n -1 known missense c.2487 p.W829C 1.000 NULL pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH7 HGNC ENSG00000092054 223 0 0.00 33 12 26.67 - - - MYOM3 0 genome.wustl.edu 37 1 24402671 24402671 + Silent SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 1 24402671 24402671 G A SNP MYOM3 ENST00000330966 human ensembl 69_37n -1 known silent c.2682 p.P894 0.003 superfamily_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors MYOM3 HGNC ENSG00000142661 80 0 0.00 30 15 33.33 - - - NEURL4 0 genome.wustl.edu 37 17 7225003 7225003 + Nonsense_Mutation SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 17 7225003 7225003 G A SNP NEURL4 ENST00000571887 human ensembl 69_37n -1 novel nonsense c.2863 p.Q955* 0.948 smart_Neu_Z,pfscan_Neu_Z pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region NEURL4 HGNC ENSG00000215041 34 0 0.00 11 4 26.67 - - - NLRP12 0 genome.wustl.edu 37 19 54313970 54313970 + Frame_Shift_Del DEL C C - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 19 54313970 54313970 C - DEL NLRP12 ENST00000391773 human ensembl 69_37n -1 known frame_shift_del c.943 p.E315fs 0.995 pfscan_NACHT_NTPase pfam_DAPIN,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_DAPIN - no_errors NLRP12 HGNC ENSG00000142405 52 0 0.00 14 2 12.50 - - - OSR2 0 genome.wustl.edu 37 8 99963751 99963751 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 8 99963751 99963751 C T SNP OSR2 ENST00000457907 human ensembl 69_37n +1 known missense c.1124 p.S375F 1.000 pfscan_Znf_C2H2 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors OSR2 HGNC ENSG00000164920 98 0 0.00 15 11 42.31 - - - PCDHGA1 0 genome.wustl.edu 37 5 140711613 140711613 + Missense_Mutation SNP G G T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 5 140711613 140711613 G T SNP PCDHGA1 ENST00000517417 human ensembl 69_37n +1 known missense c.1362 p.Q454H 0.001 superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGA1 HGNC ENSG00000204956 344 0 0.00 42 12 22.22 - - - PDGFB 0 genome.wustl.edu 37 22 39626161 39626161 + Frame_Shift_Del DEL C C - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 22 39626161 39626161 C - DEL PDGFB ENST00000331163 human ensembl 69_37n -1 known frame_shift_del c.529 p.A177fs 0.995 pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor pfam_PD_growth_factor,pfam_PDGF_N,smart_PD_growth_factor,pfscan_PD_growth_factor - no_errors PDGFB HGNC ENSG00000100311 45 0 0.00 13 2 13.33 - - - PDRG1 0 genome.wustl.edu 37 20 30534308 30534308 + Missense_Mutation SNP C C G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 20 30534308 30534308 C G SNP PDRG1 ENST00000202017 human ensembl 69_37n -1 known missense c.310 p.E104Q 1.000 pfam_PFD_beta-like,superfamily_Prefoldin pfam_PFD_beta-like,superfamily_Prefoldin - no_errors PDRG1 HGNC ENSG00000088356 283 0 0.00 92 25 21.37 - - - PDXDC1 0 genome.wustl.edu 37 16 15112739 15112739 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 16 15112739 15112739 C T SNP PDXDC1 ENST00000396410 human ensembl 69_37n +1 known missense c.1006 p.L336F 1.000 superfamily_PyrdxlP-dep_Trfase_major_dom pfam_PyrdxlP-dep_de-COase,superfamily_PyrdxlP-dep_Trfase_major_dom - no_errors PDXDC1 HGNC ENSG00000179889 1013 0 0.00 208 35 14.40 - - - PKDREJ 0 genome.wustl.edu 37 22 46654720 46654720 + Silent SNP A A C TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 22 46654720 46654720 A C SNP PKDREJ ENST00000253255 human ensembl 69_37n -1 known silent c.4500 p.P1500 0.000 NULL pfam_PKD1_2_channel,pfam_PKD/REJ-like,pfam_LipOase_LH2,pfam_Ion_trans_dom,superfamily_Lipase_LipOase,smart_GPS_dom,smart_LipOase_LH2,pfscan_LipOase_LH2,pfscan_REJ-like,prints_PKD_2 - no_errors PKDREJ HGNC ENSG00000130943 417 0 0.00 80 38 32.20 - - - PRIC285 0 genome.wustl.edu 37 20 62193250 62193251 + Frame_Shift_Ins INS - - G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 20 62193250 62193251 - G INS PRIC285 ENST00000467148 human ensembl 69_37n -1 known frame_shift_ins c.6617_6616 p.R2206fs 0.000:0.000 NULL pfam_RNase_II/R,smart_RNase_II/R - no_errors RP4-697K14.7 Clone_based_vega_gene ENSG00000130589 9 0 0.00 2 2 50.00 - - - PRKD1 0 genome.wustl.edu 37 14 30095732 30095732 + Missense_Mutation SNP C C G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 14 30095732 30095732 C G SNP PRKD1 ENST00000331968 human ensembl 69_37n -1 known missense c.1756 p.D586H 1.000 superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom,prints_DAG/PE-bd - no_errors PRKD1 HGNC ENSG00000184304 185 0 0.00 22 5 18.52 - - - PSMD7 0 genome.wustl.edu 37 16 74334086 74334086 + Missense_Mutation SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 16 74334086 74334086 G A SNP PSMD7 ENST00000219313 human ensembl 69_37n +1 known missense c.148 p.V50I 1.000 pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1 pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1 - no_errors PSMD7 HGNC ENSG00000103035 325 0 0.00 82 15 15.46 - - - RAG1 0 genome.wustl.edu 37 11 36597453 36597453 + Missense_Mutation SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 11 36597453 36597453 G A SNP RAG1 ENST00000299440 human ensembl 69_37n +1 known missense c.2599 p.D867N 1.000 NULL pfam_Znf_VDJ_recomb-activ_1,smart_Znf_RING,pfscan_Znf_RING - no_errors RAG1 HGNC ENSG00000166349 178 0 0.00 57 11 16.18 - - - RAMP3 0 genome.wustl.edu 37 7 45222967 45222967 + Frame_Shift_Del DEL G G - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 7 45222967 45222967 G - DEL RAMP3 ENST00000242249 human ensembl 69_37n +1 known frame_shift_del c.403 p.G135fs 0.034 pfam_RAMP pfam_RAMP - no_errors RAMP3 HGNC ENSG00000122679 33 0 0.00 4 2 33.33 - - - RFX6 0 genome.wustl.edu 37 6 117252535 117252535 + Missense_Mutation SNP T T C TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 6 117252535 117252535 T C SNP RFX6 ENST00000332958 human ensembl 69_37n +1 known missense c.2653 p.C885R 1.000 NULL pfam_DNA-bd_RFX - no_errors RFX6 HGNC ENSG00000185002 370 0 0.00 67 10 12.99 - - - RSPH10B2 0 genome.wustl.edu 37 7 6820992 6820992 + Missense_Mutation SNP A A G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 7 6820992 6820992 A G SNP RSPH10B2 ENST00000297186 human ensembl 69_37n +1 known missense c.1643 p.Y548C 0.009 NULL pfam_MORN,smart_MORN - no_errors RSPH10B2 HGNC ENSG00000169402 59 0 0.00 9 2 18.18 - - - SLC7A3 0 genome.wustl.edu 37 X 70147461 70147461 + Frame_Shift_Del DEL G G - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 X 70147461 70147461 G - DEL SLC7A3 ENST00000298085 human ensembl 69_37n -1 known frame_shift_del c.1056 p.M353fs 0.997 pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease pfam_AA-permease_dom,pirsf_AA/rel_permease1,tigrfam_Cat_AA_permease - no_errors SLC7A3 HGNC ENSG00000165349 65 0 0.00 13 2 13.33 - - - SPATA1 0 genome.wustl.edu 37 1 85018772 85018772 + RNA DEL A A - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 1 85018772 85018772 A - DEL SPATA1 ENST00000460286 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors SPATA1 HGNC ENSG00000122432 71 0 0.00 8 3 21.43 - - - TAF7 0 genome.wustl.edu 37 5 140699073 140699073 + Missense_Mutation SNP C C G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 5 140699073 140699073 C G SNP TAF7 ENST00000313368 human ensembl 69_37n -1 known missense c.539 p.R180P 1.000 NULL pfam_TAFII55_prot_cons_reg - no_errors TAF7 HGNC ENSG00000178913 319 0 0.00 50 9 15.25 - - - TAPT1 0 genome.wustl.edu 37 4 16177795 16177795 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 4 16177795 16177795 C T SNP TAPT1 ENST00000405303 human ensembl 69_37n -1 known missense c.1054 p.V352M 1.000 pfam_Membrane_Tatp1/CMV_rcpt pfam_Membrane_Tatp1/CMV_rcpt - no_errors TAPT1 HGNC ENSG00000169762 380 0 0.00 26 14 34.15 - - - TP53 0 genome.wustl.edu 37 17 7577130 7577130 + Missense_Mutation SNP A A T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 17 7577130 7577130 A T SNP TP53 ENST00000269305 human ensembl 69_37n -1 known missense c.808 p.F270I 1.000 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 156 0 0.00 23 13 36.11 - - - TRBV4-2 0 genome.wustl.edu 37 7 142045705 142045705 + Missense_Mutation SNP G G C TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 7 142045705 142045705 G C SNP TRBV4-2 ENST00000390392 human ensembl 69_37n +1 known missense c.233 p.S78T 0.000 pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like pfam_Ig_V-set,smart_Ig_V-set_subgr,pfscan_Ig-like - no_stop_codon:bad_bp_length_for_coding_region TRBV4-2 HGNC ENSG00000211745 334 0 0.00 82 24 22.64 - - - TRPM6 0 genome.wustl.edu 37 9 77455078 77455078 + Missense_Mutation SNP G G A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 9 77455078 77455078 G A SNP TRPM6 ENST00000451710 human ensembl 69_37n -1 known missense c.406 p.P136S 1.000 NULL pfam_MHCK_EF2_kinase,pfam_Ion_trans_dom,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase - no_errors TRPM6 HGNC ENSG00000119121 332 0 0.00 42 15 26.32 - - - TSR3 0 genome.wustl.edu 37 16 1400125 1400125 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 16 1400125 1400125 C T SNP TSR3 ENST00000007390 human ensembl 69_37n -1 known missense c.637 p.E213K 1.000 pfam_DUF367 pfam_DUF367,pfam_RNaseL-inhib_metal-bd_dom - no_errors TSR3 HGNC ENSG00000007520 47 0 0.00 18 11 37.93 - - - TTC39B 0 genome.wustl.edu 37 9 15210087 15210087 + Frame_Shift_Del DEL T T - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 9 15210087 15210087 T - DEL TTC39B ENST00000512701 human ensembl 69_37n -1 known frame_shift_del c.690 p.E231fs 1.000 pfam_OMP_IML2_mit/TPR_39 pfam_OMP_IML2_mit/TPR_39,smart_TPR_repeat - no_errors TTC39B HGNC ENSG00000155158 134 0 0.00 8 2 20.00 - - - UFL1 0 genome.wustl.edu 37 6 97001226 97001226 + Missense_Mutation SNP G G C TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 6 97001226 97001226 G C SNP UFL1 ENST00000369278 human ensembl 69_37n +1 known missense c.2232 p.K744N 1.000 NULL pfam_E3_UFM1_ligase_1 - no_errors UFL1 HGNC ENSG00000014123 511 0 0.00 68 10 12.82 - - - USP32 0 genome.wustl.edu 37 17 58275782 58275782 + Silent SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 17 58275782 58275782 C T SNP USP32 ENST00000300896 human ensembl 69_37n -1 known silent c.3273 p.L1091 1.000 pfam_Peptidase_C19,pfscan_Peptidase_C19 pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin - no_errors USP32 HGNC ENSG00000170832 418 0 0.00 69 16 18.82 - - - USP47 0 genome.wustl.edu 37 11 11964198 11964198 + Missense_Mutation SNP G G T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 11 11964198 11964198 G T SNP USP47 ENST00000399455 human ensembl 69_37n +1 known missense c.2690 p.S897I 1.000 NULL pfam_Peptidase_C19,pfscan_Peptidase_C19 - no_errors USP47 HGNC ENSG00000170242 125 0 0.00 23 4 14.81 - - - ZDBF2 0 genome.wustl.edu 37 2 207174888 207174888 + Frame_Shift_Del DEL C C - TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 2 207174888 207174888 C - DEL ZDBF2 ENST00000374423 human ensembl 69_37n +1 known frame_shift_del c.5636 p.A1879fs 0.000 NULL pfam_Znf_DBF,smart_Znf_DBF - no_errors ZDBF2 HGNC ENSG00000204186 161 0 0.00 27 7 20.00 - - - ZNF330 0 genome.wustl.edu 37 4 142151378 142151378 + Missense_Mutation SNP T T A TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 4 142151378 142151378 T A SNP ZNF330 ENST00000262990 human ensembl 69_37n +1 known missense c.477 p.F159L 1.000 pfam_NOA36 pfam_NOA36 - no_errors ZNF330 HGNC ENSG00000109445 483 0 0.00 64 10 13.51 - - - ZNF582 0 genome.wustl.edu 37 19 56896091 56896091 + Missense_Mutation SNP C C T TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 19 56896091 56896091 C T SNP ZNF582 ENST00000301310 human ensembl 69_37n -1 known missense c.695 p.C232Y 1.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF582 HGNC ENSG00000018869 229 0 0.00 30 11 26.83 - - - ZNF675 0 genome.wustl.edu 37 19 23836780 23836780 + Missense_Mutation SNP T T G TCGA-AR-A1AI-01A-11D-A12Q-09 TCGA-AR-A1AI-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 842846ea-881c-4d79-88d2-fc1703c58350 e1aef6e6-ad91-48f0-8d2e-52c680cd81f8 19 23836780 23836780 T G SNP ZNF675 ENST00000359788 human ensembl 69_37n -1 known missense c.955 p.K319Q 0.993 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF675 HGNC ENSG00000197372 202 0 0.00 16 6 27.27 - - -