Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ATF3 0 genome.wustl.edu 37 1 212792849 212792849 + Missense_Mutation SNP G G C TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 1 212792849 212792849 G C SNP ATF3 ENST00000341491 human ensembl 69_37n +1 known missense c.498 p.E166D 1.000 NULL pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP,prints_Leuzip_Fos - no_errors ATF3 HGNC ENSG00000162772 100 0 0.00 152 20 11.63 - - - BCORL1 0 genome.wustl.edu 37 X 129189983 129189983 + Missense_Mutation SNP G G A TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e X 129189983 129189983 G A SNP BCORL1 ENST00000303743 human ensembl 69_37n +1 known missense c.5230 p.E1744K 0.999 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors BCORL1 HGNC ENSG00000085185 67 0 0.00 53 18 25.35 - - - CCDC24 0 genome.wustl.edu 37 1 44458238 44458238 + Missense_Mutation SNP C C T TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 1 44458238 44458238 C T SNP CCDC24 ENST00000372318 human ensembl 69_37n +1 known missense c.346 p.H116Y 0.998 NULL NULL - no_errors CCDC24 HGNC ENSG00000159214 336 0 0.00 304 120 28.30 - - - COL24A1 0 genome.wustl.edu 37 1 86591291 86591291 + Missense_Mutation SNP C C T TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 1 86591291 86591291 C T SNP COL24A1 ENST00000370571 human ensembl 69_37n -1 known missense c.728 p.R243H 0.069 superfamily_ConA-like_lec_gl pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C - no_errors COL24A1 HGNC ENSG00000171502 147 0 0.00 103 45 30.41 - - - HCFC1 0 genome.wustl.edu 37 X 153219074 153219074 + Missense_Mutation SNP G G A TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e X 153219074 153219074 G A SNP HCFC1 ENST00000310441 human ensembl 69_37n -1 known missense c.4481 p.P1494L 0.996 NULL pfam_Kelch_2,pfam_Kelch_1,superfamily_Fibronectin_type3,smart_Fibronectin_type3 - no_errors HCFC1 HGNC ENSG00000172534 39 0 0.00 31 12 27.91 - - - HCN1 0 genome.wustl.edu 37 5 45262056 45262056 + Silent SNP G G A TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 5 45262056 45262056 G A SNP HCN1 ENST00000303230 human ensembl 69_37n -1 known silent c.2640 p.D880 0.746 NULL pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG - no_errors HCN1 HGNC ENSG00000164588 120 0 0.00 103 32 23.70 - - - MAGEB16 0 genome.wustl.edu 37 X 35820757 35820757 + Silent SNP G G A TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e X 35820757 35820757 G A SNP MAGEB16 ENST00000399992 human ensembl 69_37n +1 known silent c.540 p.E180 0.000 pfam_MAGE,pfscan_MAGE pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE - no_errors MAGEB16 HGNC ENSG00000189023 200 0 0.00 105 50 32.26 - - - MAGEE2 0 genome.wustl.edu 37 X 75004102 75004102 + Missense_Mutation SNP G G C TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e X 75004102 75004102 G C SNP MAGEE2 ENST00000373359 human ensembl 69_37n -1 known missense c.785 p.T262R 0.977 pfam_MAGE,pfscan_MAGE pfam_MAGE,pfscan_MAGE - no_errors MAGEE2 HGNC ENSG00000186675 115 0 0.00 89 35 28.23 - - - MPDZ 0 genome.wustl.edu 37 9 13224396 13224396 + Missense_Mutation SNP G G C TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 9 13224396 13224396 G C SNP MPDZ ENST00000319217 human ensembl 69_37n -1 known missense c.370 p.Q124E 1.000 superfamily_PDZ pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ - no_errors MPDZ HGNC ENSG00000107186 312 0 0.00 245 102 29.39 - - - OR2A1 0 genome.wustl.edu 37 7 144015463 144015463 + Silent SNP G G A TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 7 144015463 144015463 G A SNP OR2A1 ENST00000408951 human ensembl 69_37n +1 known silent c.246 p.A82 0.002 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam - no_errors OR2A1 HGNC ENSG00000221970 96 0 0.00 112 28 20.00 - - - POU2F3 0 genome.wustl.edu 37 11 120180259 120180259 + Silent SNP C C T TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 11 120180259 120180259 C T SNP POU2F3 ENST00000543440 human ensembl 69_37n +1 known silent c.1038 p.A346 0.731 NULL pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU,prints_TF_octamer - no_errors POU2F3 HGNC ENSG00000137709 138 0 0.00 90 42 31.82 - - - PPAN-P2RY11 0 genome.wustl.edu 37 19 10221623 10221623 + Missense_Mutation SNP C C G TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 19 10221623 10221623 C G SNP PPAN-P2RY11 ENST00000393796 human ensembl 69_37n +1 known missense c.1204 p.L402V 0.996 NULL pfam_Brix,pfam_7TM_GPCR_Rhodpsn,superfamily_Anticodon-bd,smart_Brix,prints_P2_purnocptor,prints_7TM_GPCR_Rhodpsn,pfscan_Brix,pfscan_GPCR_Rhodpsn_supfam - no_errors PPAN-P2RY11 HGNC ENSG00000243207 41 0 0.00 31 19 38.00 - - - PRCP 0 genome.wustl.edu 37 11 82561013 82561013 + Missense_Mutation SNP G G A TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 11 82561013 82561013 G A SNP PRCP ENST00000393399 human ensembl 69_37n -1 known missense c.757 p.H253Y 0.001 pfam_Peptidase_S28 pfam_Peptidase_S28 - no_errors PRCP HGNC ENSG00000137509 126 0 0.00 111 38 25.50 - - - RUNX1 0 genome.wustl.edu 37 21 36252880 36252880 + Missense_Mutation SNP A A G TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 21 36252880 36252880 A G SNP RUNX1 ENST00000300305 human ensembl 69_37n -1 known missense c.482 p.L161P 1.000 pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt - no_errors RUNX1 HGNC ENSG00000159216 273 0 0.00 202 73 26.55 - - - TP53 0 genome.wustl.edu 37 17 7579359 7579359 + Frame_Shift_Del DEL G G - TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 17 7579359 7579359 G - DEL TP53 ENST00000269305 human ensembl 69_37n -1 known frame_shift_del c.328 p.R110fs 0.028 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 58 0 0.00 24 9 27.27 - - - TSR2 0 genome.wustl.edu 37 X 54470525 54470525 + Missense_Mutation SNP C C G TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e X 54470525 54470525 C G SNP TSR2 ENST00000375151 human ensembl 69_37n +1 known missense c.349 p.Q117E 0.993 NULL pfam_Pre-rRNA_process_TSR2 - no_errors TSR2 HGNC ENSG00000158526 206 0 0.00 143 49 25.52 - - - UNC13A 0 genome.wustl.edu 37 19 17760329 17760329 + Missense_Mutation SNP C C T TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 19 17760329 17760329 C T SNP UNC13A ENST00000428389 human ensembl 69_37n -1 known missense c.1771 p.V591M 1.000 NULL pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom - no_errors UNC13A HGNC ENSG00000130477 282 0 0.00 209 71 25.36 - - - WWP2 0 genome.wustl.edu 37 16 69832690 69832690 + Missense_Mutation SNP G G A TCGA-AR-A1AN-01A-11D-A12Q-09 TCGA-AR-A1AN-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 9c879ced-92e8-4292-9b24-46005acab0f4 69a46a7b-70d9-4789-b6ee-9a5971644d7e 16 69832690 69832690 G A SNP WWP2 ENST00000356003 human ensembl 69_37n +1 known missense c.176 p.R59H 1.000 superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep pfam_HECT,pfam_WW_Rsp5_WWP,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_WW_Rsp5_WWP - no_errors WWP2 HGNC ENSG00000198373 265 1 0.38 129 67 34.18 - - -