Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All BAHCC1 0 genome.wustl.edu 37 17 79414760 79414760 + Frame_Shift_Del DEL G G - TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 17 79414760 79414760 G - DEL BAHCC1 ENST00000307745 human ensembl 69_37n +1 known frame_shift_del c.3862 p.S1291fs 0.000 NULL pfam_BAH_dom,smart_BAH_dom,pfscan_BAH_dom - no_errors BAHCC1 HGNC ENSG00000171282 11 0 0.00 27 9 25.00 - - - BCMO1 0 genome.wustl.edu 37 16 81303769 81303769 + Nonsense_Mutation SNP T T A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 16 81303769 81303769 T A SNP BCMO1 ENST00000258168 human ensembl 69_37n +1 known nonsense c.849 p.Y283* 0.965 pfam_Carotenoid_Oase pfam_Carotenoid_Oase - no_errors BCMO1 HGNC ENSG00000135697 99 0 0.00 83 12 12.63 - - - BRPF1 0 genome.wustl.edu 37 3 9783065 9783065 + Missense_Mutation SNP A A C TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 3 9783065 9783065 A C SNP BRPF1 ENST00000383829 human ensembl 69_37n +1 known missense c.1796 p.E599A 1.000 NULL pfam_Enhancer_polycomb-like_N,pfam_Bromodomain,pfam_PWWP,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_PHD,smart_Bromodomain,smart_PWWP,prints_Bromodomain,pfscan_PWWP,pfscan_Znf_PHD-finger,pfscan_Znf_C2H2,pfscan_Bromodomain - no_errors BRPF1 HGNC ENSG00000156983 69 0 0.00 84 18 17.48 - - - ELOVL5 0 genome.wustl.edu 37 6 53156612 53156612 + Splice_Site SNP G G A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 6 53156612 53156612 G A SNP ELOVL5 ENST00000370918 human ensembl 69_37n -1 known splice_site c.206+2 e2+2 1.000 - - - no_errors ELOVL5 HGNC ENSG00000012660 172 0 0.00 196 28 12.50 - - - GNAS 0 genome.wustl.edu 37 20 57485019 57485019 + Missense_Mutation SNP A A G TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 20 57485019 57485019 A G SNP GNAS ENST00000354359 human ensembl 69_37n +1 known missense c.856 p.I286V 1.000 pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S pfam_Gprotein_alpha_su,pfam_Small_GTPase_ARF/SAR,superfamily_GproteinA_insert,smart_Gprotein_alpha_su,prints_Gprotein_alpha_S,prints_Gprotein_alpha_su - no_errors GNAS HGNC ENSG00000087460 103 0 0.00 97 25 20.49 - - - HLA-A 0 genome.wustl.edu 37 6 29910604 29910604 + Silent SNP C C A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 6 29910604 29910604 C A SNP HLA-A ENST00000376806 human ensembl 69_37n +1 known silent c.144 p.A48 0.000 pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,pfam_MHC_I_a_C,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like,prints_MHC_I_a_a1/a2 - no_errors HLA-A HGNC ENSG00000206503 17 0 0.00 49 14 22.22 - - - HLA-DRB6 0 genome.wustl.edu 37 6 32521160 32521160 + RNA SNP C C G TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 6 32521160 32521160 C G SNP HLA-DRB6 ENST00000411500 human ensembl 69_37n -1 known rna NULL NULL 0.953 - - - no_errors HLA-DRB6 HGNC ENSG00000229391 13 0 0.00 44 20 31.25 - - - LILRA1 0 genome.wustl.edu 37 19 55107152 55107152 + Missense_Mutation SNP C C T TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 19 55107152 55107152 C T SNP LILRA1 ENST00000251372 human ensembl 69_37n +1 known missense c.710 p.A237V 0.000 smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like - no_errors LILRA1 HGNC ENSG00000104974 210 0 0.00 249 65 20.63 - - - MAGEA11 0 genome.wustl.edu 37 X 148798316 148798316 + Silent SNP C C G TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf X 148798316 148798316 C G SNP MAGEA11 ENST00000355220 human ensembl 69_37n +1 known silent c.1170 p.A390 0.116 pfam_MAGE,pfscan_MAGE pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE - no_errors MAGEA11 HGNC ENSG00000185247 50 0 0.00 69 9 11.54 - - - MPZL1 0 genome.wustl.edu 37 1 167741689 167741689 + Nonsense_Mutation SNP C C T TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 1 167741689 167741689 C T SNP MPZL1 ENST00000359523 human ensembl 69_37n +1 known nonsense c.436 p.Q146* 0.446 pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like,prints_Myelin_P0 pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like,prints_Myelin_P0 - no_errors MPZL1 HGNC ENSG00000197965 164 0 0.00 210 33 13.58 - - - MUC16 0 genome.wustl.edu 37 19 9007506 9007506 + Silent SNP G G A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 19 9007506 9007506 G A SNP MUC16 ENST00000397910 human ensembl 69_37n -1 known silent c.39462 p.S13154 0.000 NULL pfam_SEA,smart_SEA,pfscan_SEA - no_errors MUC16 HGNC ENSG00000181143 109 0 0.00 377 51 11.92 - - - NF1 0 genome.wustl.edu 37 17 29586058 29586058 + Missense_Mutation SNP G G C TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 17 29586058 29586058 G C SNP NF1 ENST00000358273 human ensembl 69_37n +1 known missense c.4341 p.Q1447H 1.000 pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,smart_RasGAP,pfscan_RasGAP pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_ARM-type_fold,superfamily_CRAL-TRIO_dom,smart_RasGAP,smart_CRAL-TRIO_dom,pfscan_CRAL-TRIO_dom,pfscan_RasGAP - no_errors NF1 HGNC ENSG00000196712 246 0 0.00 185 66 26.29 - - - PCDH19 0 genome.wustl.edu 37 X 99662740 99662740 + Missense_Mutation SNP G G A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf X 99662740 99662740 G A SNP PCDH19 ENST00000373034 human ensembl 69_37n -1 known missense c.856 p.R286C 0.115 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH19 HGNC ENSG00000165194 107 0 0.00 92 12 11.54 - - - PHF6 0 genome.wustl.edu 37 X 133559244 133559244 + Missense_Mutation SNP A A T TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf X 133559244 133559244 A T SNP PHF6 ENST00000394292 human ensembl 69_37n +1 known missense c.985 p.N329Y 1.000 smart_Znf_PHD superfamily_Znf_FYVE_PHD,smart_Znf_PHD - no_errors PHF6 HGNC ENSG00000156531 400 0 0.00 319 59 15.61 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 213 0 0.00 172 41 19.25 - - - RASAL2 0 genome.wustl.edu 37 1 178411925 178411925 + Missense_Mutation SNP G G A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 1 178411925 178411925 G A SNP RASAL2 ENST00000367649 human ensembl 69_37n +1 known missense c.1043 p.R348H 1.000 pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep pfam_DUF3498,pfam_RasGAP,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_PP1_inhibitor,smart_Pleckstrin_homology,smart_C2_Ca-dep,smart_RasGAP,pfscan_Pleckstrin_homology,pfscan_RasGAP - no_errors RASAL2 HGNC ENSG00000075391 216 0 0.00 165 58 26.01 - - - SOCS4 0 genome.wustl.edu 37 14 55510028 55510028 + Missense_Mutation SNP C C A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 14 55510028 55510028 C A SNP SOCS4 ENST00000339298 human ensembl 69_37n +1 known missense c.269 p.S90Y 1.000 pfam_SOCS pfam_SOCS,pfam_SOCS_C,pfam_SH2,smart_SH2,smart_SOCS_C,pfscan_SOCS_C,pfscan_SH2 - no_errors SOCS4 HGNC ENSG00000180008 146 0 0.00 144 22 13.25 - - - SYTL4 0 genome.wustl.edu 37 X 99936233 99936233 + Missense_Mutation SNP G G A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf X 99936233 99936233 G A SNP SYTL4 ENST00000454200 human ensembl 69_37n -1 known missense c.1555 p.R519W 0.997 superfamily_C2_Ca/lipid-bd_dom_CaLB pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_Rab-bd_domain,prints_Synaptotagmin - no_errors SYTL4 HGNC ENSG00000102362 134 0 0.00 168 26 13.40 - - - TP53 0 genome.wustl.edu 37 17 7577121 7577121 + Missense_Mutation SNP G G A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 17 7577121 7577121 G A SNP TP53 ENST00000269305 human ensembl 69_37n -1 known missense c.817 p.R273C 0.830 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 135 0 0.00 137 77 35.98 - - - TRANK1 0 genome.wustl.edu 37 3 36879889 36879889 + Missense_Mutation SNP C C A TCGA-AR-A1AW-01A-21D-A12Q-09 TCGA-AR-A1AW-10A-01D-A12Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 33c6b6b5-1484-4002-8f84-ba67525a8777 e93c2d61-5212-4796-8a2c-950db804fddf 3 36879889 36879889 C A SNP TRANK1 ENST00000429976 human ensembl 69_37n -1 known missense c.5359 p.A1787S 0.999 NULL pfam_UvrD-like_ATP-bd,superfamily_Ankyrin_rpt-contain_dom,smart_TPR_repeat,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR-contain_dom - no_errors TRANK1 HGNC ENSG00000168016 150 0 0.00 144 28 16.28 - - -