Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ALX1 0 genome.wustl.edu 37 12 85680747 85680747 + Missense_Mutation SNP C C A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 12 85680747 85680747 C A SNP ALX1 ENST00000316824 human ensembl 69_37n +1 known missense c.648 p.D216E 1.000 NULL pfam_Homeodomain,pfam_OAR_dom,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_OAR_dom,pfscan_Homeodomain - no_errors ALX1 HGNC ENSG00000180318 45 0 0.00 40 20 33.33 - - - APOB 0 genome.wustl.edu 37 2 21245741 21245741 + Missense_Mutation SNP A A C TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 2 21245741 21245741 A C SNP APOB ENST00000233242 human ensembl 69_37n -1 known missense c.2778 p.I926M 0.875 pfam_Vitellinogen_open_b-sht,superfamily_Lipid_transp_b-sht_shell pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N - no_errors APOB HGNC ENSG00000084674 44 0 0.00 30 13 30.23 - - - CCDC78 0 genome.wustl.edu 37 16 775286 775286 + Missense_Mutation SNP G G A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 16 775286 775286 G A SNP CCDC78 ENST00000293889 human ensembl 69_37n -1 known missense c.443 p.P148L 0.013 NULL NULL - no_errors CCDC78 HGNC ENSG00000162004 32 0 0.00 34 10 22.73 - - - CCDC80 0 genome.wustl.edu 37 3 112357487 112357487 + Silent SNP C C T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 3 112357487 112357487 C T SNP CCDC80 ENST00000206423 human ensembl 69_37n -1 known silent c.1266 p.Q422 0.320 NULL NULL - no_errors CCDC80 HGNC ENSG00000091986 79 0 0.00 53 20 27.40 - - - CD53 0 genome.wustl.edu 37 1 111435055 111435055 + Missense_Mutation SNP C C G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 1 111435055 111435055 C G SNP CD53 ENST00000271324 human ensembl 69_37n +1 known missense c.152 p.T51R 0.999 pfam_Tetraspanin/Peripherin,prints_Tetraspanin pfam_Tetraspanin/Peripherin,superfamily_Tetraspanin_EC2,prints_Tetraspanin - no_errors CD53 HGNC ENSG00000143119 131 0 0.00 97 47 32.64 - - - CD5L 0 genome.wustl.edu 37 1 157805923 157805923 + Silent SNP C C A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 1 157805923 157805923 C A SNP CD5L ENST00000368174 human ensembl 69_37n -1 known silent c.78 p.L26 0.999 superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt pfam_Srcr_rcpt,superfamily_Srcr_rcpt-rel,smart_Srcr_rcpt-rel,prints_Srcr_rcpt,pfscan_Srcr_rcpt - no_errors CD5L HGNC ENSG00000073754 48 0 0.00 31 12 27.91 - - - CD72 0 genome.wustl.edu 37 9 35612972 35612972 + Missense_Mutation SNP C C G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 9 35612972 35612972 C G SNP CD72 ENST00000259633 human ensembl 69_37n -1 known missense c.707 p.G236A 0.998 superfamily_C-type_lectin_fold,smart_C-type_lectin pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin - no_errors CD72 HGNC ENSG00000137101 101 0 0.00 82 25 23.36 - - - CDC27 0 genome.wustl.edu 37 17 45219311 45219311 + Missense_Mutation SNP T T C TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 17 45219311 45219311 T C SNP CDC27 ENST00000531206 human ensembl 69_37n -1 known missense c.1477 p.I493V 1.000 NULL pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom - no_errors CDC27 HGNC ENSG00000004897 20 0 0.00 36 8 18.18 - - - CHRNB4 0 genome.wustl.edu 37 15 78927917 78927917 + Missense_Mutation SNP A A G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 15 78927917 78927917 A G SNP CHRNB4 ENST00000261751 human ensembl 69_37n -1 known missense c.68 p.V23A 0.542 tigrfam_Neur_channel pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel - no_errors CHRNB4 HGNC ENSG00000117971 187 0 0.00 114 39 25.49 - - - CNPY3 0 genome.wustl.edu 37 6 42897358 42897360 + In_Frame_Del DEL TGC TGC - TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 TGC TGC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 6 42897358 42897360 TGC - DEL CNPY3 ENST00000372836 human ensembl 69_37n +1 known in_frame_del c.50_52 p.L21in_frame_del 0.122:0.131:0.153 NULL pfam_DUF3456 - no_errors CNPY3 HGNC ENSG00000137161 10 0 0.00 15 4 21.05 - - - CSPG4 0 genome.wustl.edu 37 15 75982085 75982085 + Missense_Mutation SNP C C T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 15 75982085 75982085 C T SNP CSPG4 ENST00000308508 human ensembl 69_37n -1 known missense c.1321 p.E441K 0.996 NULL pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G - no_errors CSPG4 HGNC ENSG00000173546 14 0 0.00 12 5 29.41 - - - DCAF6 0 genome.wustl.edu 37 1 168044671 168044671 + Nonstop_Mutation SNP T T A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 1 168044671 168044671 T A SNP DCAF6 ENST00000367840 human ensembl 69_37n +1 known nonstop c.2854 p.*952K 0.355 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_IQ_motif_EF-hand-BS,pfscan_WD40_repeat_dom - no_errors DCAF6 HGNC ENSG00000143164 74 0 0.00 124 51 28.81 - - - DYNC2H1 0 genome.wustl.edu 37 11 103116068 103116069 + Frame_Shift_Del DEL TT TT - TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 TT TT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 11 103116068 103116069 TT - DEL DYNC2H1 ENST00000398093 human ensembl 69_37n +1 known frame_shift_del c.10028_10029 p.Y3344fs 1.000:0.983 NULL pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase - no_errors DYNC2H1 HGNC ENSG00000187240 53 0 0.00 57 7 10.94 - - - DYNC2H1 0 genome.wustl.edu 37 11 103116072 103116073 + Frame_Shift_Del DEL TC TC - TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 TC TC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 11 103116072 103116073 TC - DEL DYNC2H1 ENST00000398093 human ensembl 69_37n +1 known frame_shift_del c.10032_10033 p.P3345fs 1.000:1.000 NULL pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase - no_errors DYNC2H1 HGNC ENSG00000187240 52 0 0.00 56 7 11.11 - - - ETV5 0 genome.wustl.edu 37 3 185783746 185783746 + Missense_Mutation SNP G G A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 3 185783746 185783746 G A SNP ETV5 ENST00000537818 human ensembl 69_37n -1 known missense c.892 p.P298S 1.000 pfam_ETS_PEA3_N pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets - no_errors ETV5 HGNC ENSG00000244405 46 0 0.00 69 23 25.00 - - - FAM111B 0 genome.wustl.edu 37 11 58892377 58892377 + Frame_Shift_Del DEL A A - TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 11 58892377 58892377 A - DEL FAM111B ENST00000343597 human ensembl 69_37n +1 known frame_shift_del c.807 p.K272fs 0.000 NULL superfamily_Pept_cys/ser_Trypsin-like - no_errors FAM111B HGNC ENSG00000189057 22 0 0.00 28 4 12.50 - - - FGA 0 genome.wustl.edu 37 4 155507138 155507138 + Missense_Mutation SNP T T G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 4 155507138 155507138 T G SNP FGA ENST00000302053 human ensembl 69_37n -1 known missense c.1443 p.E481D 0.995 pfam_Fibrinogen_aC pfam_Fibrinogen_a/b/g_C,pfam_Fibrinogen_a/b/g_coil_dom,pfam_Fibrinogen_aC,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C - no_errors FGA HGNC ENSG00000171560 69 0 0.00 63 9 12.50 - - - GOLGA6L2 0 genome.wustl.edu 37 15 23685218 23685220 + In_Frame_Del DEL CTC CTC - TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 CTC CTC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 15 23685218 23685220 CTC - DEL GOLGA6L2 ENST00000567107 human ensembl 69_37n -1 putative in_frame_del c.2404_2402 p.G801in_frame_del 0.015:0.016:0.021 NULL NULL - no_errors GOLGA6L2 HGNC ENSG00000174450 34 0 0.00 45 6 11.76 - - - HAPLN3 0 genome.wustl.edu 37 15 89424727 89424727 + Silent SNP G G A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 15 89424727 89424727 G A SNP HAPLN3 ENST00000359595 human ensembl 69_37n -1 known silent c.354 p.R118 0.551 pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like pfam_Link,pfam_Ig_V-set,superfamily_C-type_lectin_fold,smart_Ig_sub,smart_Ig_V-set_subgr,smart_Link,prints_Link,pfscan_Link,pfscan_Ig-like - no_errors HAPLN3 HGNC ENSG00000140511 22 0 0.00 22 5 18.52 - - - HLA-B 0 genome.wustl.edu 37 6 31323974 31323974 + Nonsense_Mutation SNP C C T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 6 31323974 31323974 C T SNP HLA-B ENST00000426590 human ensembl 69_37n -1 known nonsense c.591 p.W197* 0.903 pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2 pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2 - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region HLA-B HGNC ENSG00000234745 21 0 0.00 12 4 25.00 - - - HLA-B 0 genome.wustl.edu 37 6 31324104 31324104 + Missense_Mutation SNP G G A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 6 31324104 31324104 G A SNP HLA-B ENST00000426590 human ensembl 69_37n -1 known missense c.461 p.T154I 0.113 pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2 pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog,prints_MHC_I_a_a1/a2 - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region HLA-B HGNC ENSG00000234745 12 0 0.00 6 3 33.33 - - - KIAA1210 0 genome.wustl.edu 37 X 118221786 118221786 + Missense_Mutation SNP G G T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b X 118221786 118221786 G T SNP KIAA1210 ENST00000402510 human ensembl 69_37n -1 known missense c.3407 p.S1136Y 0.000 NULL NULL - no_errors KIAA1210 HGNC ENSG00000250423 47 0 0.00 31 4 11.43 - - - KNDC1 0 genome.wustl.edu 37 10 135020480 135020480 + Missense_Mutation SNP T T A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 10 135020480 135020480 T A SNP KNDC1 ENST00000368571 human ensembl 69_37n +1 putative missense c.3407 p.L1136H 0.000 NULL superfamily_Kinase-like_dom,smart_KIND - no_errors KNDC1 HGNC ENSG00000171798 40 0 0.00 39 8 17.02 - - - LAMP5 0 genome.wustl.edu 37 20 9498735 9498735 + Missense_Mutation SNP C C G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 20 9498735 9498735 C G SNP LAMP5 ENST00000246070 human ensembl 69_37n +1 known missense c.524 p.P175R 1.000 pfam_Lysosome-assoc_membr_glycop pfam_Lysosome-assoc_membr_glycop - no_errors LAMP5 HGNC ENSG00000125869 54 0 0.00 27 16 37.21 - - - MED24 0 genome.wustl.edu 37 17 38176104 38176104 + Silent SNP C C T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 17 38176104 38176104 C T SNP MED24 ENST00000394128 human ensembl 69_37n -1 known silent c.2787 p.E929 1.000 pfam_Mediator_Med24_N pfam_Mediator_Med24_N - no_errors MED24 HGNC ENSG00000008838 33 0 0.00 24 27 52.94 - - - MN1 0 genome.wustl.edu 37 22 28195783 28195783 + Missense_Mutation SNP G G C TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 22 28195783 28195783 G C SNP MN1 ENST00000302326 human ensembl 69_37n -1 known missense c.749 p.S250C 0.990 NULL NULL - no_errors MN1 HGNC ENSG00000169184 17 0 0.00 14 8 36.36 - - - MYO7A 0 genome.wustl.edu 37 11 76903324 76903324 + Splice_Site SNP G G T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 11 76903324 76903324 G T SNP MYO7A ENST00000409709 human ensembl 69_37n +1 known splice_site c.4152+1 e30+1 1.000 - - - no_errors MYO7A HGNC ENSG00000137474 64 0 0.00 45 21 31.82 - - - NFKB1 0 genome.wustl.edu 37 4 103501694 103501694 + Missense_Mutation SNP G G A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 4 103501694 103501694 G A SNP NFKB1 ENST00000226574 human ensembl 69_37n +1 known missense c.733 p.A245T 1.000 superfamily_p53-like_TF_DNA-bd,prints_NF_Rel_dor,pfscan_RHD pfam_RHD,pfam_Ankyrin_rpt,pfam_Death,superfamily_p53-like_TF_DNA-bd,superfamily_Ankyrin_rpt-contain_dom,superfamily_Ig_E-set,superfamily_DEATH-like,smart_IPT_TIG_rcpt,smart_Ankyrin_rpt,smart_Death,prints_NF_Rel_dor,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_RHD - no_errors NFKB1 HGNC ENSG00000109320 77 0 0.00 88 17 16.19 - - - NMS 0 genome.wustl.edu 37 2 101087011 101087011 + Nonsense_Mutation SNP C C T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 2 101087011 101087011 C T SNP NMS ENST00000376865 human ensembl 69_37n +1 known nonsense c.61 p.Q21* 0.008 NULL pfam_NMU_C - no_errors NMS HGNC ENSG00000204640 169 0 0.00 104 53 33.76 - - - OR10S1 0 genome.wustl.edu 37 11 123848195 123848195 + Silent SNP G G T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 11 123848195 123848195 G T SNP OR10S1 ENST00000531945 human ensembl 69_37n -1 known silent c.204 p.L68 0.355 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR10S1 HGNC ENSG00000196248 46 0 0.00 22 14 38.89 - - - PADI2 0 genome.wustl.edu 37 1 17395659 17395659 + Silent SNP G G T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 1 17395659 17395659 G T SNP PADI2 ENST00000375486 human ensembl 69_37n -1 known silent c.1878 p.G626 0.996 pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub - no_errors PADI2 HGNC ENSG00000117115 42 0 0.00 35 4 10.26 - - - PDE1A 0 genome.wustl.edu 37 2 183088590 183088590 + Splice_Site DEL C C - TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 2 183088590 183088590 C - DEL PDE1A ENST00000456212 human ensembl 69_37n -1 known splice_site_del c.824+1 e7+1 1.000 - - - no_errors PDE1A HGNC ENSG00000115252 73 0 0.00 89 39 30.23 - - - PDYN 0 genome.wustl.edu 37 20 1961218 1961218 + Silent SNP G G C TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 20 1961218 1961218 G C SNP PDYN ENST00000217305 human ensembl 69_37n -1 known silent c.516 p.V172 1.000 prints_Opioid_neupept pfam_Opioid_neupept,prints_Proenkphlin_B,prints_Opioid_neupept - no_errors PDYN HGNC ENSG00000101327 62 0 0.00 51 20 28.17 - - - PIWIL4 0 genome.wustl.edu 37 11 94331003 94331003 + Missense_Mutation SNP G G C TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 11 94331003 94331003 G C SNP PIWIL4 ENST00000299001 human ensembl 69_37n +1 known missense c.1302 p.W434C 1.000 superfamily_RNaseH-like_dom pfam_Piwi,pfam_PAZ,superfamily_RNaseH-like_dom,superfamily_PAZ,smart_PAZ,smart_Piwi,pfscan_PAZ,pfscan_Piwi - no_errors PIWIL4 HGNC ENSG00000134627 116 0 0.00 63 46 42.20 - - - PKHD1L1 0 genome.wustl.edu 37 8 110464392 110464392 + Silent SNP C C A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 8 110464392 110464392 C A SNP PKHD1L1 ENST00000378402 human ensembl 69_37n +1 known silent c.6390 p.A2130 0.024 pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1 - no_errors PKHD1L1 HGNC ENSG00000205038 64 0 0.00 48 21 30.43 - - - PLEK 0 genome.wustl.edu 37 2 68613653 68613653 + Missense_Mutation SNP G G T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 2 68613653 68613653 G T SNP PLEK ENST00000234313 human ensembl 69_37n +1 known missense c.492 p.W164C 1.000 pfam_DEP_dom,smart_DEP_dom,pfscan_DEP_dom pfam_Pleckstrin_homology,pfam_DEP_dom,smart_Pleckstrin_homology,smart_DEP_dom,pfscan_DEP_dom,pfscan_Pleckstrin_homology - no_errors PLEK HGNC ENSG00000115956 65 0 0.00 64 22 25.58 - - - PTCHD2 0 genome.wustl.edu 37 1 11591069 11591069 + Missense_Mutation SNP G G A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 1 11591069 11591069 G A SNP PTCHD2 ENST00000294484 human ensembl 69_37n +1 known missense c.3208 p.G1070R 1.000 NULL pfam_Patched,pfam_MMPL-typ,pfscan_SSD - no_errors PTCHD2 HGNC ENSG00000204624 29 0 0.00 22 8 26.67 - - - RALGAPB 0 genome.wustl.edu 37 20 37177413 37177413 + Missense_Mutation SNP C C G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 20 37177413 37177413 C G SNP RALGAPB ENST00000262879 human ensembl 69_37n +1 known missense c.2984 p.P995R 1.000 NULL superfamily_ARM-type_fold,pfscan_Rap_GAP - no_errors RALGAPB HGNC ENSG00000170471 116 0 0.00 160 32 16.67 - - - SERPINA12 0 genome.wustl.edu 37 14 94953679 94953679 + Silent SNP C C G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 14 94953679 94953679 C G SNP SERPINA12 ENST00000341228 human ensembl 69_37n -1 known silent c.1206 p.V402 0.039 pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom - no_errors SERPINA12 HGNC ENSG00000165953 24 0 0.00 14 12 46.15 - - - TCF4 0 genome.wustl.edu 37 18 52899822 52899822 + Missense_Mutation SNP G G C TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 18 52899822 52899822 G C SNP TCF4 ENST00000398339 human ensembl 69_37n -1 known missense c.1873 p.L625V 1.000 NULL pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd - no_errors TCF4 HGNC ENSG00000196628 80 0 0.00 68 21 23.60 - - - TNFRSF11B 0 genome.wustl.edu 37 8 119936866 119936866 + Missense_Mutation SNP G G C TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 8 119936866 119936866 G C SNP TNFRSF11B ENST00000297350 human ensembl 69_37n -1 known missense c.953 p.A318G 0.007 pirsf_TNFR_11B,pfam_Death,superfamily_DEATH-like,smart_Death pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg - no_errors TNFRSF11B HGNC ENSG00000164761 163 0 0.00 117 39 25.00 - - - TRIM60 0 genome.wustl.edu 37 4 165961691 165961691 + Missense_Mutation SNP A A G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 4 165961691 165961691 A G SNP TRIM60 ENST00000341062 human ensembl 69_37n +1 known missense c.467 p.E156G 0.006 NULL pfam_SPRY_rcpt,pfam_Znf_C3HC4_RING-type,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin - no_errors TRIM60 HGNC ENSG00000176979 55 0 0.00 26 22 45.83 - - - TRIM66 0 genome.wustl.edu 37 11 8670021 8670021 + Missense_Mutation SNP C C G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 11 8670021 8670021 C G SNP TRIM66 ENST00000299550 human ensembl 69_37n -1 known missense c.232 p.E78Q 1.000 pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box pfam_Bromodomain,pfam_Znf_B-box,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_Znf_B-box,smart_Znf_PHD,smart_Bbox_C,smart_Bromodomain,pfscan_Znf_B-box,pfscan_Znf_PHD-finger,pfscan_Bromodomain - no_errors TRIM66 HGNC ENSG00000166436 73 0 0.00 45 21 31.82 - - - TTF2 0 genome.wustl.edu 37 1 117618034 117618034 + Missense_Mutation SNP G G C TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 1 117618034 117618034 G C SNP TTF2 ENST00000369466 human ensembl 69_37n +1 known missense c.828 p.Q276H 0.004 NULL pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_Znf_GRF,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors TTF2 HGNC ENSG00000116830 19 0 0.00 21 8 27.59 - - - ULK4 0 genome.wustl.edu 37 3 41942265 41942265 + Silent SNP G G A TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 3 41942265 41942265 G A SNP ULK4 ENST00000301831 human ensembl 69_37n -1 known silent c.1239 p.I413 1.000 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors ULK4 HGNC ENSG00000168038 72 0 0.00 105 25 19.23 - - - UNC13A 0 genome.wustl.edu 37 19 17728543 17728543 + Missense_Mutation SNP A A G TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 19 17728543 17728543 A G SNP UNC13A ENST00000428389 human ensembl 69_37n -1 known missense c.4790 p.I1597T 1.000 pfam_Munc13_subgr_dom-2 pfam_Munc13_subgr_dom-2,pfam_C2_Ca-dep,pfam_Ca-dep_secretion_activator,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_C2_membr_targeting,pfscan_Prot_Kinase_C-like_PE/DAG-bd,prints_C2_dom - no_errors UNC13A HGNC ENSG00000130477 51 0 0.00 52 19 26.76 - - - ZNF76 0 genome.wustl.edu 37 6 35262260 35262260 + Missense_Mutation SNP G G T TCGA-AR-A24L-01A-11D-A167-09 TCGA-AR-A24L-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2a93298a-d272-487c-ae4a-ec385844536e 7bb4ec17-22de-45cf-8ec8-637526f4752b 6 35262260 35262260 G T SNP ZNF76 ENST00000373953 human ensembl 69_37n +1 known missense c.1522 p.V508L 0.994 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF76 HGNC ENSG00000065029 128 0 0.00 119 17 12.50 - - -