Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All APPL2 0 genome.wustl.edu 37 12 105605050 105605050 + Missense_Mutation SNP T T C TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 12 105605050 105605050 T C SNP APPL2 ENST00000551662 human ensembl 69_37n -1 known missense c.331 p.M111V 0.996 NULL pfam_PTyr_interaction_dom,pfam_Pleckstrin_homology,pfam_PTB,smart_Pleckstrin_homology,smart_PTyr_interaction_dom,pfscan_Pleckstrin_homology,pfscan_PTyr_interaction_dom - no_errors APPL2 HGNC ENSG00000136044 74 0 0.00 87 10 10.31 - - - CHD6 0 genome.wustl.edu 37 20 40065975 40065975 + Splice_Site SNP C C G TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 20 40065975 40065975 C G SNP CHD6 ENST00000373233 human ensembl 69_37n -1 known splice_site c.4008-1 e26-1 1.000 - - - no_errors CHD6 HGNC ENSG00000124177 63 0 0.00 66 22 25.00 - - - CYP2D7P1 0 genome.wustl.edu 37 22 42536703 42536703 + Missense_Mutation SNP G G A TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 22 42536703 42536703 G A SNP CYP2D7P1 ENST00000435101 human ensembl 69_37n -1 putative missense c.140 p.T47M 0.008 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_B pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_B,prints_Cyt_P450_E_grp-IV - no_errors CYP2D7P1 HGNC ENSG00000205702 91 0 0.00 63 11 14.86 - - - DOCK10 0 genome.wustl.edu 37 2 225661753 225661753 + Missense_Mutation SNP G G C TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 2 225661753 225661753 G C SNP DOCK10 ENST00000409802 human ensembl 69_37n -1 known missense c.931 p.P311A 0.930 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region DOCK10 HGNC ENSG00000135905 48 0 0.00 47 6 11.32 - - - EFNB2 0 genome.wustl.edu 37 13 107145608 107145608 + Missense_Mutation SNP G G A TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 13 107145608 107145608 G A SNP EFNB2 ENST00000245323 human ensembl 69_37n -1 known missense c.782 p.P261L 1.000 NULL pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin - no_errors EFNB2 HGNC ENSG00000125266 49 0 0.00 54 7 11.48 - - - FGF18 0 genome.wustl.edu 37 5 170883788 170883788 + Silent SNP C C A TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 5 170883788 170883788 C A SNP FGF18 ENST00000274625 human ensembl 69_37n +1 known silent c.603 p.I201 1.000 NULL pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF - no_errors FGF18 HGNC ENSG00000156427 12 0 0.00 10 4 28.57 - - - FOXA1 0 genome.wustl.edu 37 14 38061463 38061463 + Missense_Mutation SNP T T C TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 14 38061463 38061463 T C SNP FOXA1 ENST00000250448 human ensembl 69_37n -1 known missense c.526 p.I176V 1.000 pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXA1 HGNC ENSG00000129514 51 0 0.00 53 7 11.67 - - - KCNQ3 0 genome.wustl.edu 37 8 133142164 133142164 + Missense_Mutation SNP G G A TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 8 133142164 133142164 G A SNP KCNQ3 ENST00000388996 human ensembl 69_37n -1 known missense c.1964 p.T655M 0.009 pfam_K_chnl_volt-dep_KCNQ_C pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ3,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl - no_errors KCNQ3 HGNC ENSG00000184156 36 0 0.00 33 13 28.26 - - - NHS 0 genome.wustl.edu 37 X 17705913 17705913 + Missense_Mutation SNP C C T TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf X 17705913 17705913 C T SNP NHS ENST00000380060 human ensembl 69_37n +1 known missense c.617 p.P206L 0.904 NULL NULL - no_errors NHS HGNC ENSG00000188158 45 0 0.00 53 16 23.19 - - - PCYT1A 0 genome.wustl.edu 37 3 195968901 195968901 + Missense_Mutation SNP A A C TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 3 195968901 195968901 A C SNP PCYT1A ENST00000292823 human ensembl 69_37n -1 known missense c.626 p.I209S 1.000 NULL pfam_Cytidylyltransf,superfamily_NA-bd_OB-fold-like,tigrfam_Cyt_trans-rel - no_errors PCYT1A HGNC ENSG00000161217 56 0 0.00 51 8 13.56 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A T TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 3 178952085 178952085 A T SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047L 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 40 0 0.00 44 11 20.00 - - - PKHD1L1 0 genome.wustl.edu 37 8 110454342 110454342 + Silent SNP T T C TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 8 110454342 110454342 T C SNP PKHD1L1 ENST00000378402 human ensembl 69_37n +1 known silent c.4311 p.Y1437 0.842 superfamily_Cupredoxin pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1 - no_errors PKHD1L1 HGNC ENSG00000205038 75 0 0.00 65 22 25.29 - - - POLG 0 genome.wustl.edu 37 15 89876861 89876861 + Missense_Mutation SNP C C T TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 15 89876861 89876861 C T SNP POLG ENST00000268124 human ensembl 69_37n -1 known missense c.125 p.R42Q 0.003 pirsf_DNA-dir_DNA_pol_A_mt_sub pirsf_DNA-dir_DNA_pol_A_mt_sub,pfam_DNA-dir_DNA_pol_A_palm_dom,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_A_palm_dom,prints_DNA-dir_DNA_pol_A_mt - no_errors POLG HGNC ENSG00000140521 9 0 0.00 6 4 40.00 - - - SENP1 0 genome.wustl.edu 37 12 48482684 48482684 + Missense_Mutation SNP C C T TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 12 48482684 48482684 C T SNP SENP1 ENST00000004980 human ensembl 69_37n -1 known missense c.280 p.A94T 1.000 NULL pfam_Peptidase_C48,pfscan_Peptidase_C48 - no_errors SENP1 HGNC ENSG00000079387 130 0 0.00 99 30 23.26 - - - SLC30A10 0 genome.wustl.edu 37 1 220091665 220091665 + Missense_Mutation SNP G G A TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 1 220091665 220091665 G A SNP SLC30A10 ENST00000366926 human ensembl 69_37n -1 known missense c.890 p.P297L 1.000 pfam_Cation_efflux,tigrfam_Cation_efflux pfam_Cation_efflux,tigrfam_Cation_efflux - no_errors SLC30A10 HGNC ENSG00000196660 56 0 0.00 64 18 21.95 - - - TMEM247 0 genome.wustl.edu 37 2 46707808 46707808 + Missense_Mutation SNP C C G TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 2 46707808 46707808 C G SNP TMEM247 ENST00000434431 human ensembl 69_37n +1 known missense c.382 p.Q128E 1.000 NULL NULL - no_stop_codon:bad_bp_length_for_coding_region TMEM247 HGNC ENSG00000187600 27 0 0.00 27 5 15.62 - - - TUBGCP3 0 genome.wustl.edu 37 13 113212589 113212589 + Missense_Mutation SNP C C T TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 13 113212589 113212589 C T SNP TUBGCP3 ENST00000261965 human ensembl 69_37n -1 known missense c.469 p.V157M 0.021 NULL pfam_Spc97_Spc98 - no_errors TUBGCP3 HGNC ENSG00000126216 51 0 0.00 39 11 22.00 - - - ZNF75A 0 genome.wustl.edu 37 16 3363109 3363109 + Missense_Mutation SNP G G A TCGA-AR-A24O-01A-11D-A167-09 TCGA-AR-A24O-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 2c9fc77f-951b-4764-911a-f0cff3174fb1 118ecd9e-4983-464f-921b-f12f91c40dbf 16 3363109 3363109 G A SNP ZNF75A ENST00000574298 human ensembl 69_37n +1 known missense c.34 p.D12N 0.981 pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF75A HGNC ENSG00000162086 81 0 0.00 88 11 11.11 - - -