Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ATN1 0 genome.wustl.edu 37 12 7045891 7045892 + In_Frame_Ins INS - - CAG TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 12 7045891 7045892 - CAG INS ATN1 ENST00000356654 human ensembl 69_37n +1 known in_frame_ins c.1461_1462 p.491in_frame_insQ 0.002:0.834 pfam_Atrophin-like pfam_Atrophin-like,prints_Atrophin-1 - no_errors ATN1 HGNC ENSG00000111676 24 0 0.00 27 6 18.18 - - - ATXN2 0 genome.wustl.edu 37 12 111951204 111951204 + Missense_Mutation SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 12 111951204 111951204 C T SNP ATXN2 ENST00000483311 human ensembl 69_37n -1 known missense c.1757 p.G586E 1.000 NULL pfam_LsmAD_domain,pfam_Ataxin-2_C,superfamily_LSM_dom - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region ATXN2 HGNC ENSG00000204842 45 0 0.00 42 16 27.59 - - - CBLN3 0 genome.wustl.edu 37 14 24898144 24898144 + Silent SNP G G T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 14 24898144 24898144 G T SNP CBLN3 ENST00000267406 human ensembl 69_37n -1 known silent c.117 p.V39 0.863 NULL pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,prints_C1q,pfscan_C1q - no_errors CBLN3 HGNC ENSG00000139899 11 0 0.00 11 5 31.25 - - - CDH1 0 genome.wustl.edu 37 16 68857311 68857312 + Frame_Shift_Ins INS - - T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 16 68857311 68857312 - T INS CDH1 ENST00000261769 human ensembl 69_37n +1 known frame_shift_ins c.1946_1947 p.I650fs 0.016:0.014 pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 22 0 0.00 13 6 31.58 - - - DNAH5 0 genome.wustl.edu 37 5 13770961 13770961 + Nonsense_Mutation SNP G G A TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 5 13770961 13770961 G A SNP DNAH5 ENST00000265104 human ensembl 69_37n -1 known nonsense c.9502 p.R3168* 1.000 NULL pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase - no_errors DNAH5 HGNC ENSG00000039139 69 0 0.00 44 18 29.03 - - - FAM129A 0 genome.wustl.edu 37 1 184764696 184764696 + Silent SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 1 184764696 184764696 C T SNP FAM129A ENST00000367511 human ensembl 69_37n -1 known silent c.2202 p.T734 0.000 NULL NULL - no_errors FAM129A HGNC ENSG00000135842 80 0 0.00 66 30 31.25 - - - FBXO7 0 genome.wustl.edu 37 22 32889166 32889166 + Missense_Mutation SNP G G T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 22 32889166 32889166 G T SNP FBXO7 ENST00000266087 human ensembl 69_37n +1 known missense c.1042 p.D348Y 1.000 pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like pfam_Inhibitor_PI31,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like - no_errors FBXO7 HGNC ENSG00000100225 97 0 0.00 116 46 28.40 - - - FCGBP 0 genome.wustl.edu 37 19 40399385 40399385 + Missense_Mutation SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 19 40399385 40399385 C T SNP FCGBP ENST00000221347 human ensembl 69_37n -1 known missense c.6310 p.G2104R 0.000 pfam_VWF_type-D,smart_VWF_type-D pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out - no_errors FCGBP HGNC ENSG00000090920 8 0 0.00 6 4 40.00 - - - LARP7 0 genome.wustl.edu 37 4 113568475 113568475 + Missense_Mutation SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 4 113568475 113568475 C T SNP LARP7 ENST00000324052 human ensembl 69_37n +1 known missense c.767 p.P256L 0.004 NULL pfam_RRM_3,pfam_Lupus_La_RNA-bd,pfam_RRM_dom,smart_Lupus_La_RNA-bd,smart_RRM_dom,pfscan_Lupus_La_RNA-bd,pfscan_RRM_dom,prints_Lupus_La - no_errors LARP7 HGNC ENSG00000174720 45 0 0.00 52 13 20.00 - - - LINS 0 genome.wustl.edu 37 15 101120487 101120488 + Frame_Shift_Ins INS - - A TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 15 101120487 101120488 - A INS LINS ENST00000314742 human ensembl 69_37n -1 known frame_shift_ins c.470_469 p.Y157fs 0.965:0.921 NULL NULL - no_errors LINS HGNC ENSG00000140471 71 0 0.00 40 8 16.67 - - - MED12 0 genome.wustl.edu 37 X 70352768 70352768 + Nonsense_Mutation SNP G G T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 X 70352768 70352768 G T SNP MED12 ENST00000333646 human ensembl 69_37n +1 known nonsense c.4489 p.E1497* 1.000 NULL pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12 - no_errors MED12 HGNC ENSG00000184634 30 0 0.00 33 12 26.67 - - - MED27 0 genome.wustl.edu 37 9 134759459 134759459 + Missense_Mutation SNP G G C TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 9 134759459 134759459 G C SNP MED27 ENST00000292035 human ensembl 69_37n -1 known missense c.709 p.Q237E 1.000 pfam_Mediator_Med27 pfam_Mediator_Med27 - no_errors MED27 HGNC ENSG00000160563 51 0 0.00 35 16 31.37 - - - MYOM2 0 genome.wustl.edu 37 8 2020585 2020586 + Frame_Shift_Ins INS - - A TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 8 2020585 2020586 - A INS MYOM2 ENST00000262113 human ensembl 69_37n +1 known frame_shift_ins c.954_955 p.D318fs 0.992:1.000 pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Fibronectin_type3,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors MYOM2 HGNC ENSG00000036448 17 0 0.00 16 6 27.27 - - - NGF 0 genome.wustl.edu 37 1 115829179 115829179 + Missense_Mutation SNP G G A TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 1 115829179 115829179 G A SNP NGF ENST00000369512 human ensembl 69_37n -1 known missense c.238 p.R80W 1.000 pirsf_Nerve_growth_factor-like pirsf_Nerve_growth_factor-like,pfam_Nerve_growth_factor-rel,smart_Nerve_growth_factor-rel,prints_Nerve_growth_factor-rel,prints_Nerve_growth_factor_bsu_mml,prints_Nerve_growth_factor_bsu,pfscan_Nerve_growth_factor-rel - no_errors NGF HGNC ENSG00000134259 22 0 0.00 14 7 33.33 - - - OR5I1 0 genome.wustl.edu 37 11 55703435 55703435 + Missense_Mutation SNP C C A TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 11 55703435 55703435 C A SNP OR5I1 ENST00000301532 human ensembl 69_37n -1 known missense c.442 p.V148F 0.014 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR5I1 HGNC ENSG00000167825 38 0 0.00 17 9 34.62 - - - PIEZO2 0 genome.wustl.edu 37 18 10800452 10800452 + Missense_Mutation SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 18 10800452 10800452 C T SNP PIEZO2 ENST00000582913 human ensembl 69_37n -1 known missense c.1261 p.G421S 0.966 NULL NULL - no_errors PIEZO2 HGNC ENSG00000154864 48 0 0.00 39 10 20.41 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 34 0 0.00 36 16 30.77 - - - SLC26A3 0 genome.wustl.edu 37 7 107408040 107408040 + Missense_Mutation SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 7 107408040 107408040 C T SNP SLC26A3 ENST00000340010 human ensembl 69_37n -1 known missense c.2255 p.R752H 1.000 NULL pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt - no_errors SLC26A3 HGNC ENSG00000091138 72 0 0.00 45 24 34.29 - - - SPPL2C 0 genome.wustl.edu 37 17 43923374 43923374 + Silent SNP C C A TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 17 43923374 43923374 C A SNP SPPL2C ENST00000329196 human ensembl 69_37n +1 known silent c.1102 p.R368 0.997 pfam_Peptidase_A22B_SPP,smart_Peptidase_A22 pfam_Peptidase_A22B_SPP,pfam_Protease-assoc_domain,smart_Peptidase_A22 - no_errors SPPL2C HGNC ENSG00000185294 41 0 0.00 39 7 15.22 - - - SSX6 0 genome.wustl.edu 37 X 47972582 47972582 + Missense_Mutation SNP G G A TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 X 47972582 47972582 G A SNP SSX6 ENST00000376932 human ensembl 69_37n +1 known missense c.287 p.R96H 0.000 NULL pfam_SSXRD_motif,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel - no_errors SSX6 HGNC ENSG00000171483 96 0 0.00 118 35 22.88 - - - TCEANC2 0 genome.wustl.edu 37 1 54562090 54562090 + Nonsense_Mutation SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 1 54562090 54562090 C T SNP TCEANC2 ENST00000371331 human ensembl 69_37n +1 known nonsense c.661 p.Q221* 0.995 superfamily_TFIIS_cen_dom pfam_TFIIS_N,superfamily_TFIIS_N,superfamily_TFIIS_cen_dom,smart_TFIIS/CRSP70_N_sub - no_errors TCEANC2 HGNC ENSG00000116205 28 0 0.00 14 7 33.33 - - - TP53 0 genome.wustl.edu 37 17 7577120 7577120 + Missense_Mutation SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 17 7577120 7577120 C T SNP TP53 ENST00000269305 human ensembl 69_37n -1 known missense c.818 p.R273H 0.864 pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor - no_errors TP53 HGNC ENSG00000141510 62 0 0.00 31 13 29.55 - - - UNC79 0 genome.wustl.edu 37 14 94046588 94046589 + Frame_Shift_Ins INS - - G TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 14 94046588 94046589 - G INS UNC79 ENST00000553484 human ensembl 69_37n +1 known frame_shift_ins c.2527_2528 p.S846fs 1.000:1.000 NULL superfamily_ARM-type_fold - no_errors UNC79 HGNC ENSG00000133958 32 0 0.00 38 12 24.00 - - - WIZ 0 genome.wustl.edu 37 19 15536454 15536454 + Missense_Mutation SNP C C T TCGA-AR-A24T-01A-11D-A167-09 TCGA-AR-A24T-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 09991de6-2e8e-476f-987b-98d9a85dac7d 390d8a22-e4e5-4221-87ab-00075d4e80d9 19 15536454 15536454 C T SNP WIZ ENST00000389282 human ensembl 69_37n -1 known missense c.3778 p.V1260I 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors WIZ HGNC ENSG00000011451 19 0 0.00 12 5 29.41 - - -