Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADCY7 0 genome.wustl.edu 37 16 50346035 50346035 + Missense_Mutation SNP G G A TCGA-AR-A24W-01A-11D-A17G-09 TCGA-AR-A24W-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 454e7cd4-8424-4cad-8fbb-f69affa5d1bf 781a3f88-4ca5-4f67-bcef-dcfe30dced42 16 50346035 50346035 G A SNP ADCY7 ENST00000254235 human ensembl 69_37n +1 known missense c.2537 p.R846H 1.000 smart_A/G_cyclase pfam_A/G_cyclase,pfam_Adenylate_cyclase-like,superfamily_A/G_cyclase,smart_A/G_cyclase,pfscan_A/G_cyclase - no_errors ADCY7 HGNC ENSG00000121281 51 0 0.00 50 13 19.70 - - - ADCYAP1R1 0 genome.wustl.edu 37 7 31146206 31146206 + Missense_Mutation SNP G G A TCGA-AR-A24W-01A-11D-A17G-09 TCGA-AR-A24W-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 454e7cd4-8424-4cad-8fbb-f69affa5d1bf 781a3f88-4ca5-4f67-bcef-dcfe30dced42 7 31146206 31146206 G A SNP ADCYAP1R1 ENST00000304166 human ensembl 69_37n +1 known missense c.1315 p.G439R 1.000 prints_GPCR_2_PACAP_1_rcpt pfam_GPCR_2_secretin-like,pfam_GPCR_2_extracellular_dom,smart_GPCR_2_extracellular_dom,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_GPCR_2_PACAP_1_rcpt,prints_GPCR_2_secretin-like - no_errors ADCYAP1R1 HGNC ENSG00000078549 53 0 0.00 86 14 14.00 - - - ATP13A4 0 genome.wustl.edu 37 3 193174938 193174938 + Nonsense_Mutation SNP G G A TCGA-AR-A24W-01A-11D-A17G-09 TCGA-AR-A24W-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 454e7cd4-8424-4cad-8fbb-f69affa5d1bf 781a3f88-4ca5-4f67-bcef-dcfe30dced42 3 193174938 193174938 G A SNP ATP13A4 ENST00000428352 human ensembl 69_37n -1 known nonsense c.685 p.Q229* 0.989 pfam_Dehalogen-like_hydro,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_unknown-pump-sp pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr - pseudogene:no_stop_codon:bad_bp_length_for_coding_region ATP13A4 HGNC ENSG00000127249 60 0 0.00 46 19 29.23 - - - BNC2 0 genome.wustl.edu 37 9 16552596 16552596 + Missense_Mutation SNP C C T TCGA-AR-A24W-01A-11D-A17G-09 TCGA-AR-A24W-10A-01D-A167-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 454e7cd4-8424-4cad-8fbb-f69affa5d1bf 781a3f88-4ca5-4f67-bcef-dcfe30dced42 9 16552596 16552596 C T SNP BNC2 ENST00000380672 human ensembl 69_37n -1 known missense c.601 p.E201K 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors BNC2 HGNC ENSG00000173068 36 0 0.00 42 12 22.22 - - - LINC00200 0 genome.wustl.edu 37 10 1205771 1205771 + RNA SNP T T C TCGA-AR-A24W-01A-11D-A17G-09 TCGA-AR-A24W-10A-01D-A167-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 454e7cd4-8424-4cad-8fbb-f69affa5d1bf 781a3f88-4ca5-4f67-bcef-dcfe30dced42 10 1205771 1205771 T C SNP LINC00200 ENST00000425630 human ensembl 69_37n +1 known rna NULL NULL 0.020 - - - no_errors LINC00200 HGNC ENSG00000229205 19 0 0.00 17 4 19.05 - - - NPIPL2 0 genome.wustl.edu 37 16 74411912 74411912 + Missense_Mutation SNP G G A TCGA-AR-A24W-01A-11D-A17G-09 TCGA-AR-A24W-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 454e7cd4-8424-4cad-8fbb-f69affa5d1bf 781a3f88-4ca5-4f67-bcef-dcfe30dced42 16 74411912 74411912 G A SNP NPIPL2 ENST00000429990 human ensembl 69_37n +1 known missense c.41 p.G14E 0.091 pfam_NPIP pfam_NPIP - no_errors NPIPL2 HGNC ENSG00000196436 14 0 0.00 13 8 38.10 - - - PRR12 0 genome.wustl.edu 37 19 50098208 50098208 + Missense_Mutation SNP G G A TCGA-AR-A24W-01A-11D-A17G-09 TCGA-AR-A24W-10A-01D-A167-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 454e7cd4-8424-4cad-8fbb-f69affa5d1bf 781a3f88-4ca5-4f67-bcef-dcfe30dced42 19 50098208 50098208 G A SNP PRR12 ENST00000418929 human ensembl 69_37n +1 known missense c.616 p.E206K 1.000 NULL NULL - no_errors PRR12 HGNC ENSG00000126464 24 0 0.00 16 7 30.43 - - -