Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All BAG2 0 genome.wustl.edu 37 6 57048818 57048818 + Nonsense_Mutation SNP C C T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 6 57048818 57048818 C T SNP BAG2 ENST00000370693 human ensembl 69_37n +1 known nonsense c.466 p.Q156* 1.000 pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain pfam_BAG_domain,smart_BAG_domain,pfscan_BAG_domain - no_errors BAG2 HGNC ENSG00000112208 39 0 0.00 45 5 10.00 - - - CARD11 0 genome.wustl.edu 37 7 2962378 2962378 + Missense_Mutation SNP C C T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 7 2962378 2962378 C T SNP CARD11 ENST00000396946 human ensembl 69_37n -1 known missense c.2159 p.R720Q 0.027 superfamily_PDZ pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD - no_errors CARD11 HGNC ENSG00000198286 29 0 0.00 40 6 13.04 - - - CHRNA10 0 genome.wustl.edu 37 11 3691096 3691096 + Missense_Mutation SNP C C T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 11 3691096 3691096 C T SNP CHRNA10 ENST00000250699 human ensembl 69_37n -1 known missense c.137 p.R46K 1.000 pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel - no_errors CHRNA10 HGNC ENSG00000129749 59 0 0.00 85 13 13.27 - - - DPP8 0 genome.wustl.edu 37 15 65766607 65766607 + Missense_Mutation SNP G G C TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 15 65766607 65766607 G C SNP DPP8 ENST00000341861 human ensembl 69_37n -1 known missense c.1524 p.I508M 0.998 pfam_Peptidase_S9B pfam_Peptidase_S9B,pfam_Peptidase_S9,pfam_X-Pro-like_dom - no_errors DPP8 HGNC ENSG00000074603 30 0 0.00 48 7 12.73 - - - KRTAP4-4 0 genome.wustl.edu 37 17 39316500 39316500 + Silent SNP G G A TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 17 39316500 39316500 G A SNP KRTAP4-4 ENST00000390661 human ensembl 69_37n -1 known silent c.444 p.P148 0.986 NULL NULL - no_errors KRTAP4-4 HGNC ENSG00000171396 49 0 0.00 67 9 11.84 - - - MIER2 0 genome.wustl.edu 37 19 336103 336103 + Missense_Mutation SNP G G T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 19 336103 336103 G T SNP MIER2 ENST00000264819 human ensembl 69_37n -1 known missense c.80 p.P27Q 0.879 NULL pfam_ELM2_dom,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_ELM2_dom - no_errors MIER2 HGNC ENSG00000105556 36 0 0.00 29 6 17.14 - - - MYH4 0 genome.wustl.edu 37 17 10366488 10366488 + Nonsense_Mutation SNP G G A TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 17 10366488 10366488 G A SNP MYH4 ENST00000255381 human ensembl 69_37n -1 known nonsense c.823 p.R275* 0.146 pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH4 HGNC ENSG00000264424 48 0 0.00 37 7 15.91 - - - MYOZ1 0 genome.wustl.edu 37 10 75391782 75391782 + Missense_Mutation SNP T T A TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 10 75391782 75391782 T A SNP MYOZ1 ENST00000359322 human ensembl 69_37n -1 known missense c.806 p.N269I 1.000 pfam_Calsarcin-bd pfam_Calsarcin-bd - no_errors MYOZ1 HGNC ENSG00000177791 55 0 0.00 85 13 13.27 - - - NBPF10 0 genome.wustl.edu 37 1 145323666 145323666 + Missense_Mutation SNP A A G TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 1 145323666 145323666 A G SNP NBPF10 ENST00000342960 human ensembl 69_37n +1 known missense c.3503 p.D1168G 0.004 NULL pfam_NBPF_dom - no_errors NBPF10 HGNC ENSG00000163386 62 0 0.00 63 9 12.50 - - - NPAP1 0 genome.wustl.edu 37 15 24922101 24922101 + Missense_Mutation SNP G G C TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 15 24922101 24922101 G C SNP NPAP1 ENST00000329468 human ensembl 69_37n +1 known missense c.1087 p.E363Q 0.001 NULL NULL - no_errors NPAP1 HGNC ENSG00000185823 28 0 0.00 25 4 13.79 - - - OR6K6 0 genome.wustl.edu 37 1 158725034 158725034 + Silent SNP G G A TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 1 158725034 158725034 G A SNP OR6K6 ENST00000368144 human ensembl 69_37n +1 known silent c.429 p.L143 1.000 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR6K6 HGNC ENSG00000180433 31 0 0.00 43 7 14.00 - - - PCDHB2 0 genome.wustl.edu 37 5 140476634 140476634 + Missense_Mutation SNP G G A TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 5 140476634 140476634 G A SNP PCDHB2 ENST00000194155 human ensembl 69_37n +1 known missense c.2260 p.E754K 0.998 NULL pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHB2 HGNC ENSG00000112852 62 0 0.00 65 8 10.96 - - - PLAC1 0 genome.wustl.edu 37 X 133700448 133700448 + Missense_Mutation SNP G G C TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b X 133700448 133700448 G C SNP PLAC1 ENST00000359237 human ensembl 69_37n -1 known missense c.265 p.Q89E 0.000 NULL NULL - no_errors PLAC1 HGNC ENSG00000170965 67 0 0.00 81 10 10.99 - - - PPM1F 0 genome.wustl.edu 37 22 22277806 22277806 + Missense_Mutation SNP C C T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 22 22277806 22277806 C T SNP PPM1F ENST00000263212 human ensembl 69_37n -1 known missense c.1024 p.D342N 0.998 pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like - no_errors PPM1F HGNC ENSG00000100034 22 0 0.00 24 5 17.24 - - - RRAGD 0 genome.wustl.edu 37 6 90097118 90097118 + Nonsense_Mutation SNP G G A TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 6 90097118 90097118 G A SNP RRAGD ENST00000369415 human ensembl 69_37n -1 known nonsense c.340 p.Q114* 1.000 pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su - no_errors RRAGD HGNC ENSG00000025039 46 0 0.00 40 5 11.11 - - - SEC23B 0 genome.wustl.edu 37 20 18526630 18526630 + Missense_Mutation SNP G G C TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 20 18526630 18526630 G C SNP SEC23B ENST00000262544 human ensembl 69_37n +1 known missense c.1696 p.D566H 1.000 pfam_Sec23/24_helical_dom,superfamily_Sec23/24_helical_dom pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Gelsolin_dom,pfam_Znf_Sec23_Sec24,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24 - no_errors SEC23B HGNC ENSG00000101310 80 0 0.00 86 10 10.42 - - - SLC12A6 0 genome.wustl.edu 37 15 34553129 34553129 + Missense_Mutation SNP C C T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 15 34553129 34553129 C T SNP SLC12A6 ENST00000558589 human ensembl 69_37n -1 known missense c.382 p.E128K 1.000 prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS pfam_AA-permease_dom,pfam_K/Cl_cotranspt_1/3,prints_KCL_cotranspt,tigrfam_Na/K/Cl_cotransptS - no_errors SLC12A6 HGNC ENSG00000140199 37 0 0.00 42 6 12.50 - - - STK33 0 genome.wustl.edu 37 11 8496364 8496364 + Splice_Site SNP C C T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 11 8496364 8496364 C T SNP STK33 ENST00000534493 human ensembl 69_37n -1 putative splice_site c.1-1 e1-1 0.008 - - - no_errors STK33 HGNC ENSG00000130413 56 0 0.00 64 14 17.95 - - - TRPM1 0 genome.wustl.edu 37 15 31339418 31339418 + Missense_Mutation SNP C C T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 15 31339418 31339418 C T SNP TRPM1 ENST00000542188 human ensembl 69_37n -1 known missense c.1711 p.D571N 1.000 NULL pfam_Ion_trans_dom - no_errors TRPM1 HGNC ENSG00000134160 35 0 0.00 49 12 19.67 - - - WBSCR17 0 genome.wustl.edu 37 7 70885903 70885903 + Silent SNP G G T TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 7 70885903 70885903 G T SNP WBSCR17 ENST00000333538 human ensembl 69_37n +1 known silent c.774 p.P258 0.086 pfam_Glyco_trans_2 pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors WBSCR17 HGNC ENSG00000185274 41 0 0.00 47 6 11.32 - - - ZNF648 0 genome.wustl.edu 37 1 182026630 182026630 + Missense_Mutation SNP C C A TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 1 182026630 182026630 C A SNP ZNF648 ENST00000339948 human ensembl 69_37n -1 known missense c.516 p.K172N 0.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF648 HGNC ENSG00000179930 43 0 0.00 31 4 11.43 - - - ZNF66P 0 genome.wustl.edu 37 19 20989209 20989209 + Missense_Mutation SNP G G A TCGA-AR-A2LH-01A-31D-A18P-09 TCGA-AR-A2LH-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 681045b0-3975-4e0f-acdd-3a5e74c3cb8f a7502dd8-c6dd-4105-b73a-7eaae335746b 19 20989209 20989209 G A SNP ZNF66P ENST00000425625 human ensembl 69_37n +1 known missense c.941 p.R314H 0.000 pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF66P HGNC ENSG00000160229 8 0 0.00 11 10 47.62 - - -