Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADAMTSL1 0 genome.wustl.edu 37 9 18908545 18908545 + Silent SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 9 18908545 18908545 G A SNP ADAMTSL1 ENST00000380545 human ensembl 69_37n +1 putative silent c.1391 p.*464 1.000 NULL pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like - no_errors ADAMTSL1 HGNC ENSG00000178031 55 0 0.00 97 28 22.40 - - - AKD1 0 genome.wustl.edu 37 6 109863350 109863350 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 6 109863350 109863350 C T SNP AKD1 ENST00000424296 human ensembl 69_37n -1 known missense c.3250 p.E1084K 1.000 smart_AAA+_ATPase pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase - no_errors AKD1 HGNC ENSG00000155085 89 0 0.00 197 47 19.26 - - - ANKHD1 0 genome.wustl.edu 37 5 139884447 139884447 + Nonsense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 5 139884447 139884447 C T SNP ANKHD1 ENST00000297183 human ensembl 69_37n +1 known nonsense c.3046 p.Q1016* 1.000 pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt - no_errors ANKHD1 HGNC ENSG00000131503 54 0 0.00 92 12 11.32 - - - ATP2A1 0 genome.wustl.edu 37 16 28909594 28909594 + Missense_Mutation SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 16 28909594 28909594 G A SNP ATP2A1 ENST00000357084 human ensembl 69_37n +1 known missense c.1586 p.R529Q 1.000 superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr - no_errors ATP2A1 HGNC ENSG00000196296 40 0 0.00 47 20 29.85 - - - C1orf173 0 genome.wustl.edu 37 1 75038972 75038972 + Missense_Mutation SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 1 75038972 75038972 G A SNP C1orf173 ENST00000326665 human ensembl 69_37n -1 known missense c.2422 p.P808S 0.001 NULL NULL - no_errors C1orf173 HGNC ENSG00000178965 63 0 0.00 135 35 20.59 - - - C7orf26 0 genome.wustl.edu 37 7 6639592 6639592 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 7 6639592 6639592 C T SNP C7orf26 ENST00000344417 human ensembl 69_37n +1 known missense c.713 p.T238I 1.000 NULL NULL - no_errors C7orf26 HGNC ENSG00000146576 41 0 0.00 124 34 21.52 - - - CDC42BPA 0 genome.wustl.edu 37 1 227300567 227300567 + Silent SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 1 227300567 227300567 C T SNP CDC42BPA ENST00000334218 human ensembl 69_37n -1 known silent c.1695 p.L565 1.000 NULL pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom - no_errors CDC42BPA HGNC ENSG00000143776 94 0 0.00 387 67 14.76 - - - CDC73 0 genome.wustl.edu 37 1 193121549 193121549 + Missense_Mutation SNP A A T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 1 193121549 193121549 A T SNP CDC73 ENST00000367435 human ensembl 69_37n +1 known missense c.947 p.H316L 1.000 pfam_RNA_pol_access_fac_Cdc73 pfam_RNA_pol_access_fac_Cdc73 - no_errors CDC73 HGNC ENSG00000134371 62 0 0.00 171 31 15.35 - - - CDH1 0 genome.wustl.edu 37 16 68835780 68835781 + Frame_Shift_Ins INS - - C TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 16 68835780 68835781 - C INS CDH1 ENST00000261769 human ensembl 69_37n +1 known frame_shift_ins c.371_372 p.P127fs 0.005:0.015 superfamily_Cadherin-like pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 25 0 0.00 53 24 31.17 - - - CNTRL 0 genome.wustl.edu 37 9 123880638 123880638 + Silent SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 9 123880638 123880638 G A SNP CNTRL ENST00000238341 human ensembl 69_37n +1 known silent c.1470 p.G490 1.000 NULL pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp - no_errors CNTRL HGNC ENSG00000119397 35 0 0.00 79 17 17.71 - - - EPHB1 0 genome.wustl.edu 37 3 134911580 134911580 + Missense_Mutation SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 3 134911580 134911580 G A SNP EPHB1 ENST00000398015 human ensembl 69_37n +1 known missense c.2045 p.R682H 1.000 pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom - no_errors EPHB1 HGNC ENSG00000154928 104 0 0.00 119 37 23.72 - - - FAM171A1 0 genome.wustl.edu 37 10 15255350 15255351 + Frame_Shift_Ins INS - - T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 10 15255350 15255351 - T INS FAM171A1 ENST00000378116 human ensembl 69_37n -1 known frame_shift_ins c.2237_2236 p.M746fs 1.000:1.000 pfam_Uncharacterised_FAM171 pfam_Uncharacterised_FAM171 - no_errors FAM171A1 HGNC ENSG00000148468 25 0 0.00 70 20 22.22 - - - FBXL14 0 genome.wustl.edu 37 12 1702885 1702885 + Silent SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 12 1702885 1702885 G A SNP FBXL14 ENST00000339235 human ensembl 69_37n -1 known silent c.348 p.I116 1.000 smart_Leu-rich_rpt_Cys-con_subtyp pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt_2,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp - no_errors FBXL14 HGNC ENSG00000171823 36 0 0.00 25 9 26.47 - - - FBXL2 0 genome.wustl.edu 37 3 33416839 33416839 + Silent SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 3 33416839 33416839 C T SNP FBXL2 ENST00000484457 human ensembl 69_37n +1 known silent c.717 p.L239 0.999 smart_Leu-rich_rpt_Cys-con_subtyp pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like - no_errors FBXL2 HGNC ENSG00000153558 67 0 0.00 143 35 19.66 - - - FOXJ2 0 genome.wustl.edu 37 12 8197502 8197502 + Silent SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 12 8197502 8197502 C T SNP FOXJ2 ENST00000162391 human ensembl 69_37n +1 known silent c.765 p.F255 1.000 NULL pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXJ2 HGNC ENSG00000065970 76 0 0.00 149 26 14.86 - - - FZD5 0 genome.wustl.edu 37 2 208633332 208633332 + Silent SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 2 208633332 208633332 G A SNP FZD5 ENST00000295417 human ensembl 69_37n -1 known silent c.132 p.I44 1.000 pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled - no_errors FZD5 HGNC ENSG00000163251 64 0 0.00 55 9 14.06 - - - GMEB1 0 genome.wustl.edu 37 1 29041281 29041281 + Missense_Mutation SNP A A T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 1 29041281 29041281 A T SNP GMEB1 ENST00000294409 human ensembl 69_37n +1 known missense c.1718 p.D573V 1.000 NULL pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom - no_errors GMEB1 HGNC ENSG00000162419 20 0 0.00 21 8 27.59 - - - HEATR5A 0 genome.wustl.edu 37 14 31763188 31763188 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 14 31763188 31763188 C T SNP HEATR5A ENST00000538864 human ensembl 69_37n -1 novel missense c.4400 p.R1467K 0.018 superfamily_ARM-type_fold superfamily_ARM-type_fold - pseudogene:no_stop_codon:bad_bp_length_for_coding_region HEATR5A HGNC ENSG00000129493 137 0 0.00 323 69 17.60 - - - HIPK2 0 genome.wustl.edu 37 7 139416554 139416554 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 7 139416554 139416554 C T SNP HIPK2 ENST00000406875 human ensembl 69_37n -1 known missense c.280 p.V94M 0.995 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors HIPK2 HGNC ENSG00000064393 148 0 0.00 185 48 20.60 - - - HK2 0 genome.wustl.edu 37 2 75107455 75107455 + Silent SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 2 75107455 75107455 C T SNP HK2 ENST00000290573 human ensembl 69_37n +1 known silent c.1329 p.L443 1.000 pfam_Hexokinase_C pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase - no_errors HK2 HGNC ENSG00000159399 41 0 0.00 26 14 35.00 - - - IFFO2 0 genome.wustl.edu 37 1 19246221 19246221 + Missense_Mutation SNP A A G TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 1 19246221 19246221 A G SNP IFFO2 ENST00000455833 human ensembl 69_37n -1 known missense c.773 p.I258T 1.000 NULL pfam_F - no_errors IFFO2 HGNC ENSG00000169991 107 0 0.00 123 20 13.99 - - - KIAA0232 0 genome.wustl.edu 37 4 6865788 6865788 + Missense_Mutation SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 4 6865788 6865788 G A SNP KIAA0232 ENST00000307659 human ensembl 69_37n +1 known missense c.3679 p.E1227K 0.999 NULL NULL - no_errors KIAA0232 HGNC ENSG00000170871 26 0 0.00 92 22 19.30 - - - MEA1 0 genome.wustl.edu 37 6 42980990 42980990 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 6 42980990 42980990 C T SNP MEA1 ENST00000244711 human ensembl 69_37n -1 known missense c.166 p.E56K 1.000 pfam_MEA1 pfam_MEA1 - no_errors MEA1 HGNC ENSG00000124733 63 0 0.00 101 18 15.13 - - - MORC4 0 genome.wustl.edu 37 X 106228454 106228454 + Silent SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba X 106228454 106228454 C T SNP MORC4 ENST00000355610 human ensembl 69_37n -1 known silent c.546 p.E182 1.000 superfamily_ATPase-like_ATP-bd pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW - no_errors MORC4 HGNC ENSG00000133131 44 0 0.00 88 29 24.79 - - - NEK1 0 genome.wustl.edu 37 4 170400599 170400599 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 4 170400599 170400599 C T SNP NEK1 ENST00000507142 human ensembl 69_37n -1 known missense c.2094 p.M698I 0.006 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors NEK1 HGNC ENSG00000137601 27 0 0.00 57 15 20.83 - - - NHSL1 0 genome.wustl.edu 37 6 138768229 138768229 + Nonsense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 6 138768229 138768229 C T SNP NHSL1 ENST00000427025 human ensembl 69_37n -1 known nonsense c.585 p.W195* 1.000 NULL NULL - no_errors NHSL1 HGNC ENSG00000135540 156 0 0.00 288 79 21.53 - - - NOX3 0 genome.wustl.edu 37 6 155750167 155750167 + Silent SNP G G T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 6 155750167 155750167 G T SNP NOX3 ENST00000159060 human ensembl 69_37n -1 known silent c.906 p.P302 0.244 pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain - no_errors NOX3 HGNC ENSG00000074771 22 0 0.00 44 10 18.52 - - - NR3C2 0 genome.wustl.edu 37 4 149357960 149357960 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 4 149357960 149357960 C T SNP NR3C2 ENST00000355292 human ensembl 69_37n -1 known missense c.53 p.R18Q 1.000 NULL pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt - no_errors NR3C2 HGNC ENSG00000151623 38 0 0.00 66 23 25.84 - - - PCDH11X 0 genome.wustl.edu 37 X 91873605 91873605 + Nonsense_Mutation SNP C C A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba X 91873605 91873605 C A SNP PCDH11X ENST00000373094 human ensembl 69_37n +1 known nonsense c.3710 p.S1237* 0.151 NULL pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDH11X HGNC ENSG00000102290 148 0 0.00 244 68 21.79 - - - PDILT 0 genome.wustl.edu 37 16 20380840 20380840 + Missense_Mutation SNP G G A TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 16 20380840 20380840 G A SNP PDILT ENST00000302451 human ensembl 69_37n -1 known missense c.1090 p.R364C 0.000 superfamily_Thioredoxin-like_fold pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold - no_errors PDILT HGNC ENSG00000169340 84 0 0.00 228 64 21.92 - - - RBMXL3 0 genome.wustl.edu 37 X 114426627 114426627 + Missense_Mutation SNP G G C TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba X 114426627 114426627 G C SNP RBMXL3 ENST00000424776 human ensembl 69_37n +1 known missense c.2623 p.G875R 0.768 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors RBMXL3 HGNC ENSG00000175718 37 0 0.00 30 6 16.67 - - - SCAPER 0 genome.wustl.edu 37 15 76763568 76763568 + Silent SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 15 76763568 76763568 C T SNP SCAPER ENST00000324767 human ensembl 69_37n -1 known silent c.3063 p.L1021 1.000 NULL smart_Znf_U1 - no_errors SCAPER HGNC ENSG00000140386 58 0 0.00 120 19 13.67 - - - TCF25 0 genome.wustl.edu 37 16 89977557 89977557 + Missense_Mutation SNP G G T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 16 89977557 89977557 G T SNP TCF25 ENST00000263346 human ensembl 69_37n +1 known missense c.1942 p.A648S 1.000 NULL pfam_TCF25 - no_errors TCF25 HGNC ENSG00000141002 25 0 0.00 20 4 16.67 - - - TNIK 0 genome.wustl.edu 37 3 170802027 170802027 + Missense_Mutation SNP T T C TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 3 170802027 170802027 T C SNP TNIK ENST00000436636 human ensembl 69_37n -1 known missense c.3086 p.N1029S 1.000 NULL pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom - no_errors TNIK HGNC ENSG00000154310 110 1 0.89 258 65 20.00 - - - TTN 0 genome.wustl.edu 37 2 179419393 179419393 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 2 179419393 179419393 C T SNP TTN ENST00000342992 human ensembl 69_37n -1 known missense c.80977 p.D26993N 1.000 pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like - no_errors TTN HGNC ENSG00000155657 56 0 0.00 105 35 25.00 - - - VPS13B 0 genome.wustl.edu 37 8 100479779 100479779 + Missense_Mutation SNP A A G TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 8 100479779 100479779 A G SNP VPS13B ENST00000358544 human ensembl 69_37n +1 known missense c.3583 p.T1195A 0.006 NULL pfam_Autophagy-rel_C - no_errors VPS13B HGNC ENSG00000132549 47 0 0.00 111 25 18.38 - - - XIRP2 0 genome.wustl.edu 37 2 168105004 168105004 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 2 168105004 168105004 C T SNP XIRP2 ENST00000295237 human ensembl 69_37n +1 known missense c.7102 p.P2368S 0.997 NULL pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd - no_errors XIRP2 HGNC ENSG00000163092 41 0 0.00 115 17 12.88 - - - ZCCHC2 0 genome.wustl.edu 37 18 60241584 60241584 + Missense_Mutation SNP C C T TCGA-AR-A2LN-01A-21D-A18P-09 TCGA-AR-A2LN-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 50f62c87-7930-4d8a-add5-597baec8135d 9e056f5e-3cb0-41f2-8f05-c087737291ba 18 60241584 60241584 C T SNP ZCCHC2 ENST00000269499 human ensembl 69_37n +1 known missense c.2270 p.A757V 0.394 NULL pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC - no_errors ZCCHC2 HGNC ENSG00000141664 41 0 0.00 82 30 26.79 - - -