Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All APOBR 0 genome.wustl.edu 37 16 28507415 28507417 + In_Frame_Del DEL GGA GGA - TCGA-AR-A2LQ-01A-22D-A18P-09 TCGA-AR-A2LQ-10A-01D-A18P-09 GGA GGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1949e7b2-9b9a-491d-9f97-3e1490358060 2d6e42d0-34e0-4f7f-819c-303ff154aafa 16 28507415 28507417 GGA - DEL APOBR ENST00000564831 human ensembl 69_37n +1 known in_frame_del c.1053_1055 p.E353in_frame_del 0.000:0.005:0.010 NULL NULL - no_errors APOBR HGNC ENSG00000184730 21 0 0.00 21 5 18.52 - - - CROCCP2 0 genome.wustl.edu 37 1 16950090 16950090 + RNA SNP G G A TCGA-AR-A2LQ-01A-22D-A18P-09 TCGA-AR-A2LQ-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1949e7b2-9b9a-491d-9f97-3e1490358060 2d6e42d0-34e0-4f7f-819c-303ff154aafa 1 16950090 16950090 G A SNP CROCCP2 ENST00000421700 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors CROCCP2 HGNC ENSG00000215908 9 0 0.00 6 4 40.00 - - - DGCR14 0 genome.wustl.edu 37 22 19121812 19121812 + Missense_Mutation SNP G G A TCGA-AR-A2LQ-01A-22D-A18P-09 TCGA-AR-A2LQ-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1949e7b2-9b9a-491d-9f97-3e1490358060 2d6e42d0-34e0-4f7f-819c-303ff154aafa 22 19121812 19121812 G A SNP DGCR14 ENST00000252137 human ensembl 69_37n -1 known missense c.1328 p.A443V 0.165 NULL pfam_Nuclear_protein_DGCR14 - no_errors DGCR14 HGNC ENSG00000100056 95 0 0.00 107 12 10.08 - - - FADS6 0 genome.wustl.edu 37 17 72889676 72889676 + Silent SNP G G C TCGA-AR-A2LQ-01A-22D-A18P-09 TCGA-AR-A2LQ-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1949e7b2-9b9a-491d-9f97-3e1490358060 2d6e42d0-34e0-4f7f-819c-303ff154aafa 17 72889676 72889676 G C SNP FADS6 ENST00000310226 human ensembl 69_37n -1 known silent c.18 p.P6 0.027 NULL pfam_Fatty_acid_desaturase-1 - no_errors FADS6 HGNC ENSG00000172782 13 0 0.00 13 5 27.78 - - - SPATA1 0 genome.wustl.edu 37 1 85018772 85018772 + RNA DEL A A - TCGA-AR-A2LQ-01A-22D-A18P-09 TCGA-AR-A2LQ-10A-01D-A18P-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1949e7b2-9b9a-491d-9f97-3e1490358060 2d6e42d0-34e0-4f7f-819c-303ff154aafa 1 85018772 85018772 A - DEL SPATA1 ENST00000460286 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors SPATA1 HGNC ENSG00000122432 14 0 0.00 4 2 33.33 - - - SSBP3 0 genome.wustl.edu 37 1 54722851 54722851 + Missense_Mutation SNP C C A TCGA-AR-A2LQ-01A-22D-A18P-09 TCGA-AR-A2LQ-10A-01D-A18P-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1949e7b2-9b9a-491d-9f97-3e1490358060 2d6e42d0-34e0-4f7f-819c-303ff154aafa 1 54722851 54722851 C A SNP SSBP3 ENST00000371320 human ensembl 69_37n -1 known missense c.456 p.M152I 1.000 pfam_SSDP_ss-bd pfam_SSDP_ss-bd,smart_LisH_dimerisation,pfscan_LisH_dimerisation,prints_SSDP_DNA-bd - no_errors SSBP3 HGNC ENSG00000157216 42 0 0.00 25 4 13.79 - - - TPSAB1 0 genome.wustl.edu 37 16 1291454 1291454 + Missense_Mutation SNP G G A TCGA-AR-A2LQ-01A-22D-A18P-09 TCGA-AR-A2LQ-10A-01D-A18P-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1949e7b2-9b9a-491d-9f97-3e1490358060 2d6e42d0-34e0-4f7f-819c-303ff154aafa 16 1291454 1291454 G A SNP TPSAB1 ENST00000562675 human ensembl 69_37n +1 known missense c.253 p.A85T 0.000 pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6 pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A - no_errors TPSAB1 HGNC ENSG00000172236 15 0 0.00 18 7 28.00 - - - YTHDC1 0 genome.wustl.edu 37 4 69204039 69204039 + Missense_Mutation SNP T T C TCGA-AR-A2LQ-01A-22D-A18P-09 TCGA-AR-A2LQ-10A-01D-A18P-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 1949e7b2-9b9a-491d-9f97-3e1490358060 2d6e42d0-34e0-4f7f-819c-303ff154aafa 4 69204039 69204039 T C SNP YTHDC1 ENST00000344157 human ensembl 69_37n -1 known missense c.92 p.Y31C 1.000 NULL pfam_YTH_domain,pfscan_YTH_domain - no_errors YTHDC1 HGNC ENSG00000083896 69 0 0.00 84 11 11.58 - - -