Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ACPL2 0 genome.wustl.edu 37 3 141011671 141011671 + Frame_Shift_Del DEL C C - TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 3 141011671 141011671 C - DEL ACPL2 ENST00000286353 human ensembl 69_37n +1 known frame_shift_del c.1067 p.I357fs 0.827 pfam_His_Pase_superF_clade-2 pfam_His_Pase_superF_clade-2 - no_errors ACPL2 HGNC ENSG00000155893 49 0 0.00 35 8 18.18 - - - ANLN 0 genome.wustl.edu 37 7 36447401 36447401 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 7 36447401 36447401 G A SNP ANLN ENST00000265748 human ensembl 69_37n +1 known missense c.932 p.G311E 0.198 NULL pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors ANLN HGNC ENSG00000011426 64 0 0.00 54 25 31.65 - - - BNC2 0 genome.wustl.edu 37 9 16552753 16552753 + Silent SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 9 16552753 16552753 C T SNP BNC2 ENST00000380672 human ensembl 69_37n -1 known silent c.444 p.K148 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors BNC2 HGNC ENSG00000173068 37 0 0.00 47 15 24.19 - - - BPIFA4P 0 genome.wustl.edu 37 20 31787199 31787199 + RNA SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 20 31787199 31787199 C T SNP BPIFA4P ENST00000375465 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors BPIFA4P HGNC ENSG00000183566 71 0 0.00 53 21 28.00 - - - CA13 0 genome.wustl.edu 37 8 86178919 86178919 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 8 86178919 86178919 G A SNP CA13 ENST00000321764 human ensembl 69_37n +1 known missense c.437 p.G146E 0.998 pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a pfam_Carbonic_anhydrase_a,superfamily_Carbonic_anhydrase_a,pfscan_Carbonic_anhydrase_a - no_errors CA13 HGNC ENSG00000185015 98 0 0.00 141 25 15.06 - - - CARD9 0 genome.wustl.edu 37 9 139265795 139265795 + Silent SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 9 139265795 139265795 G A SNP CARD9 ENST00000371732 human ensembl 69_37n -1 known silent c.303 p.R101 0.022 superfamily_DEATH-like pfam_CARD,superfamily_DEATH-like,pfscan_CARD - no_errors CARD9 HGNC ENSG00000187796 53 0 0.00 60 12 16.67 - - - CCDC108 0 genome.wustl.edu 37 2 219897223 219897223 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 2 219897223 219897223 G A SNP CCDC108 ENST00000341552 human ensembl 69_37n -1 known missense c.614 p.T205M 0.099 NULL superfamily_PapD-like,pfscan_Major_sperm - no_errors CCDC108 HGNC ENSG00000181378 36 0 0.00 32 8 20.00 - - - CEACAM18 0 genome.wustl.edu 37 19 51981843 51981843 + Nonsense_Mutation SNP G G T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 19 51981843 51981843 G T SNP CEACAM18 ENST00000451626 human ensembl 69_37n +1 known nonsense c.130 p.E44* 0.033 NULL pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors CEACAM18 HGNC ENSG00000213822 56 0 0.00 47 18 27.69 - - - CFHR3 0 genome.wustl.edu 37 1 196757919 196757919 + Missense_Mutation SNP T T C TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 196757919 196757919 T C SNP CFHR3 ENST00000367427 human ensembl 69_37n +1 known missense c.658 p.C220R 0.000 NULL pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP - no_errors CFHR3 HGNC ENSG00000116785 51 0 0.00 55 9 14.06 - - - CLCNKA 0 genome.wustl.edu 37 1 16360190 16360190 + RNA SNP A A C TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 16360190 16360190 A C SNP CLCNKA ENST00000464764 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors CLCNKA HGNC ENSG00000186510 35 0 0.00 33 5 13.16 - - - CPEB3 0 genome.wustl.edu 37 10 93999919 93999920 + Frame_Shift_Ins INS - - G TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 10 93999919 93999920 - G INS CPEB3 ENST00000265997 human ensembl 69_37n -1 known frame_shift_ins c.189_188 p.A64fs 1.000:1.000 NULL pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom - no_errors CPEB3 HGNC ENSG00000107864 43 0 0.00 48 11 18.64 - - - CTNNA2 0 genome.wustl.edu 37 2 80874927 80874927 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 2 80874927 80874927 G A SNP CTNNA2 ENST00000361291 human ensembl 69_37n +1 known missense c.2750 p.R917Q 1.000 NULL pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin - no_errors CTNNA2 HGNC ENSG00000066032 22 0 0.00 15 5 25.00 - - - EIF4A2 0 genome.wustl.edu 37 3 186501401 186501401 + Missense_Mutation SNP T T A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 3 186501401 186501401 T A SNP EIF4A2 ENST00000440191 human ensembl 69_37n +1 known missense c.2 p.M1K 1.000 NULL pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif - no_errors EIF4A2 HGNC ENSG00000156976 87 0 0.00 60 14 18.92 - - - ELK1 0 genome.wustl.edu 37 X 47498441 47498441 + Silent SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 X 47498441 47498441 C T SNP ELK1 ENST00000247161 human ensembl 69_37n -1 known silent c.507 p.P169 0.946 NULL pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets - no_errors ELK1 HGNC ENSG00000126767 122 0 0.00 66 28 29.79 - - - F8 0 genome.wustl.edu 37 X 154194831 154194831 + Missense_Mutation SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 X 154194831 154194831 C T SNP F8 ENST00000360256 human ensembl 69_37n -1 known missense c.1141 p.D381N 0.572 NULL pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom - no_errors F8 HGNC ENSG00000185010 87 0 0.00 80 18 18.37 - - - FAM193B 0 genome.wustl.edu 37 5 176958509 176958509 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 5 176958509 176958509 G A SNP FAM193B ENST00000443375 human ensembl 69_37n -1 known missense c.950 p.P317L 1.000 NULL NULL - no_errors FAM193B HGNC ENSG00000146067 44 0 0.00 24 15 38.46 - - - FASN 0 genome.wustl.edu 37 17 80040424 80040424 + Silent SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 17 80040424 80040424 G A SNP FASN ENST00000306749 human ensembl 69_37n -1 known silent c.5898 p.G1966 0.103 pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,smart_PKS/FAS_KR pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like - no_errors FASN HGNC ENSG00000169710 51 0 0.00 38 7 15.56 - - - FCRL5 0 genome.wustl.edu 37 1 157490260 157490260 + Missense_Mutation SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 157490260 157490260 C T SNP FCRL5 ENST00000356953 human ensembl 69_37n -1 known missense c.2593 p.G865R 0.001 NULL smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors FCRL5 HGNC ENSG00000143297 27 0 0.00 27 7 20.59 - - - FOLH1 0 genome.wustl.edu 37 11 49204790 49204790 + Silent SNP A A G TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 11 49204790 49204790 A G SNP FOLH1 ENST00000256999 human ensembl 69_37n -1 known silent c.831 p.Y277 1.000 NULL pfam_TFR-like_dimer_dom,pfam_Protease-assoc_domain,pfam_Peptidase_M28,superfamily_TFR-like_dimer_dom - no_errors FOLH1 HGNC ENSG00000086205 49 0 0.00 36 4 10.00 - - - GJC2 0 genome.wustl.edu 37 1 228345773 228345773 + Missense_Mutation SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 228345773 228345773 C T SNP GJC2 ENST00000366714 human ensembl 69_37n +1 known missense c.314 p.A105V 0.001 pfam_Connexin_N pfam_Connexin_N,pfam_Connexin_CCC,smart_Connexin_N,prints_Connexin - no_errors GJC2 HGNC ENSG00000198835 12 0 0.00 7 5 41.67 - - - GNB5 0 genome.wustl.edu 37 15 52416711 52416711 + Missense_Mutation SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 15 52416711 52416711 C T SNP GNB5 ENST00000261837 human ensembl 69_37n -1 known missense c.1135 p.G379R 1.000 pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pirsf_Guanine_nucleotide-bd_bsu,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep - no_errors GNB5 HGNC ENSG00000069966 75 0 0.00 52 9 14.75 - - - KCNU1 0 genome.wustl.edu 37 8 36788602 36788602 + Missense_Mutation SNP G G T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 8 36788602 36788602 G T SNP KCNU1 ENST00000399881 human ensembl 69_37n +1 known missense c.2870 p.G957V 0.001 NULL pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_2,prints_K_chnl_Ca-activ_BK_asu - no_errors KCNU1 HGNC ENSG00000215262 70 0 0.00 150 19 11.24 - - - KRT1 0 genome.wustl.edu 37 12 53069280 53069280 + Silent SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 12 53069280 53069280 G A SNP KRT1 ENST00000252244 human ensembl 69_37n -1 known silent c.1632 p.G544 0.001 NULL pfam_F,superfamily_Prefoldin,prints_Keratin_II - no_errors KRT1 HGNC ENSG00000167768 84 0 0.00 76 15 16.48 - - - LILRA4 0 genome.wustl.edu 37 19 54848688 54848689 + Frame_Shift_Ins INS - - G TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 19 54848688 54848689 - G INS LILRA4 ENST00000291759 human ensembl 69_37n -1 known frame_shift_ins c.935_934 p.L312fs 0.979:0.982 smart_Ig_sub,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like smart_Ig_sub,smart_Ig_sub2,pirsf_A1B_glyco/leuk_Ig-like_rcpt,pfscan_Ig-like - no_errors LILRA4 HGNC ENSG00000239961 95 0 0.00 65 23 26.14 - - - LILRB1 0 genome.wustl.edu 37 19 55146043 55146043 + RNA SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 19 55146043 55146043 C T SNP LILRB1 ENST00000462628 human ensembl 69_37n +1 known rna NULL NULL 0.001 - - - no_errors LILRB1 HGNC ENSG00000104972 72 0 0.00 52 9 14.75 - - - MAOB 0 genome.wustl.edu 37 X 43626803 43626803 + Silent SNP G G T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 X 43626803 43626803 G T SNP MAOB ENST00000378069 human ensembl 69_37n -1 known silent c.1473 p.G491 0.592 NULL pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase - no_errors MAOB HGNC ENSG00000069535 96 0 0.00 67 31 31.63 - - - MBL1P 0 genome.wustl.edu 37 10 81680252 81680252 + RNA SNP A A G TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 10 81680252 81680252 A G SNP MBL1P ENST00000480805 human ensembl 69_37n +1 known rna NULL NULL 1.000 - - - no_errors MBL1P HGNC ENSG00000242600 55 0 0.00 47 7 12.73 - - - MEP1A 0 genome.wustl.edu 37 6 46797126 46797126 + Missense_Mutation SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 6 46797126 46797126 C T SNP MEP1A ENST00000230588 human ensembl 69_37n +1 known missense c.962 p.S321L 0.000 pirsf_Pept_M12A_Meprin,pfam_MAM_dom,superfamily_ConA-like_lec_gl,smart_MAM_dom,prints_MAM_dom,pfscan_MAM_dom pirsf_Pept_M12A_Meprin,pfam_Peptidase_M12A,pfam_MATH,pfam_MAM_dom,pfam_EGF-like_dom,superfamily_TRAF-like,superfamily_ConA-like_lec_gl,smart_Peptidase_Metallo,smart_MAM_dom,smart_MATH,prints_Peptidase_M12A,prints_MAM_dom,pfscan_EG-like_dom,pfscan_MATH,pfscan_MAM_dom - no_errors MEP1A HGNC ENSG00000112818 44 0 0.00 51 16 23.88 - - - NSUN4 0 genome.wustl.edu 37 1 46807697 46807697 + RNA SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 46807697 46807697 C T SNP NSUN4 ENST00000498008 human ensembl 69_37n +1 known rna NULL NULL 0.009 - - - no_errors NSUN4 HGNC ENSG00000117481 64 0 0.00 42 5 10.42 - - - OR6P1 0 genome.wustl.edu 37 1 158532977 158532977 + Missense_Mutation SNP G G T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 158532977 158532977 G T SNP OR6P1 ENST00000334632 human ensembl 69_37n -1 known missense c.418 p.L140M 0.000 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn - no_errors OR6P1 HGNC ENSG00000186440 28 0 0.00 29 6 17.14 - - - PAQR7 0 genome.wustl.edu 37 1 26189712 26189712 + Frame_Shift_Del DEL C C - TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 26189712 26189712 C - DEL PAQR7 ENST00000374296 human ensembl 69_37n -1 known frame_shift_del c.619 p.E207fs 1.000 pfam_HlyIII-related pfam_HlyIII-related - no_errors PAQR7 HGNC ENSG00000182749 36 0 0.00 11 2 15.38 - - - PNN 0 genome.wustl.edu 37 14 39649964 39649965 + Frame_Shift_Del DEL AA AA - TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 AA AA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 14 39649964 39649965 AA - DEL PNN ENST00000216832 human ensembl 69_37n +1 known frame_shift_del c.1051_1052 p.K351fs 1.000:1.000 NULL pfam_Pinin_SDK_N,pfam_Pinin_SDK_MemA - no_errors PNN HGNC ENSG00000100941 45 0 0.00 33 5 13.16 - - - PRPF3 0 genome.wustl.edu 37 1 150307463 150307463 + Silent SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 150307463 150307463 G A SNP PRPF3 ENST00000324862 human ensembl 69_37n +1 known silent c.786 p.G262 0.982 NULL pfam_Pre-mRNA_splic_Prp3,pfam_DUF1115,pfam_PWI,superfamily_PWI,smart_PWI - no_errors PRPF3 HGNC ENSG00000117360 41 0 0.00 48 11 18.64 - - - PRRC2C 0 genome.wustl.edu 37 1 171526403 171526403 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 171526403 171526403 G A SNP PRRC2C ENST00000392078 human ensembl 69_37n +1 known missense c.5152 p.E1718K 1.000 NULL pfam_BAT2_N - no_errors PRRC2C HGNC ENSG00000117523 48 0 0.00 58 8 12.12 - - - PSG5 0 genome.wustl.edu 37 19 43687592 43687592 + Silent SNP T T C TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 19 43687592 43687592 T C SNP PSG5 ENST00000401992 human ensembl 69_37n -1 putative silent c.462 p.T154 0.000 NULL pfam_Ig_V-set - no_errors PSG5 HGNC ENSG00000204941 54 0 0.00 38 12 24.00 - - - RGAG1 0 genome.wustl.edu 37 X 109696711 109696711 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 X 109696711 109696711 G A SNP RGAG1 ENST00000465301 human ensembl 69_37n +1 known missense c.2866 p.A956T 0.001 NULL NULL - no_errors RGAG1 HGNC ENSG00000243978 86 0 0.00 59 17 22.37 - - - RPS6KA2 0 genome.wustl.edu 37 6 166923827 166923827 + Nonsense_Mutation SNP G G T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 6 166923827 166923827 G T SNP RPS6KA2 ENST00000510118 human ensembl 69_37n -1 known nonsense c.392 p.S131* 0.885 pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors RPS6KA2 HGNC ENSG00000071242 28 0 0.00 42 12 22.22 - - - SMAD6 0 genome.wustl.edu 37 15 67073407 67073407 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 15 67073407 67073407 G A SNP SMAD6 ENST00000288840 human ensembl 69_37n +1 known missense c.1025 p.R342H 1.000 pfam_SMAD_dom_Dwarfin-type,superfamily_SMAD_FHA_domain,smart_SMAD_dom_Dwarfin-type,pfscan_SMAD_dom_Dwarfin-type pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type - no_errors SMAD6 HGNC ENSG00000137834 102 0 0.00 106 26 19.70 - - - TGS1 0 genome.wustl.edu 37 8 56737254 56737254 + Missense_Mutation SNP G G A TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 8 56737254 56737254 G A SNP TGS1 ENST00000260129 human ensembl 69_37n +1 known missense c.2554 p.E852K 1.000 NULL pfam_RNA_cap_Gua-N2-MeTrfase,pfam_RNA_methylase_dom,pfam_tRNA_Trfase_Trm5/Tyw2 - no_errors TGS1 HGNC ENSG00000137574 68 0 0.00 43 14 24.56 - - - TMEM14B 0 genome.wustl.edu 37 6 10756854 10756854 + RNA SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 6 10756854 10756854 C T SNP TMEM14B ENST00000486421 human ensembl 69_37n +1 known rna NULL NULL 0.019 - - - no_errors TMEM14B HGNC ENSG00000137210 17 0 0.00 12 7 36.84 - - - TSHZ3 0 genome.wustl.edu 37 19 31769937 31769937 + Nonsense_Mutation SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 19 31769937 31769937 C T SNP TSHZ3 ENST00000240587 human ensembl 69_37n -1 known nonsense c.762 p.W254* 1.000 NULL superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2 - no_errors TSHZ3 HGNC ENSG00000121297 45 0 0.00 43 8 15.69 - - - UBE2QL1 0 genome.wustl.edu 37 5 6449081 6449081 + Silent SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 5 6449081 6449081 C T SNP UBE2QL1 ENST00000399816 human ensembl 69_37n +1 known silent c.75 p.F25 1.000 pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2 pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2 - no_errors UBE2QL1 HGNC ENSG00000215218 41 0 0.00 23 15 39.47 - - - UBE4B 0 genome.wustl.edu 37 1 10221207 10221207 + Missense_Mutation SNP A A G TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 1 10221207 10221207 A G SNP UBE4B ENST00000343090 human ensembl 69_37n +1 known missense c.3061 p.K1021E 1.000 pfam_Ub_conjug_fac_E4_core pfam_Ub_conjug_fac_E4_core,pfam_Ubox_domain,smart_Ubox_domain - no_errors UBE4B HGNC ENSG00000130939 69 0 0.00 43 11 20.37 - - - ZNF268 0 genome.wustl.edu 37 12 133780523 133780523 + Missense_Mutation SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 12 133780523 133780523 C T SNP ZNF268 ENST00000228289 human ensembl 69_37n +1 known missense c.2251 p.P751S 0.121 pfscan_Znf_C2H2 pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box - no_errors ZNF268 HGNC ENSG00000090612 32 0 0.00 24 5 17.24 - - - ZNF573 0 genome.wustl.edu 37 19 38284083 38284083 + RNA SNP C C T TCGA-AR-A5QN-01A-12D-A28B-09 TCGA-AR-A5QN-10A-01D-A28E-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b786e544-43c3-4fe3-a81e-5c1cf5f7c82d dff99bc6-c494-4862-9fc9-10e8f8d98628 19 38284083 38284083 C T SNP ZNF573 ENST00000587684 human ensembl 69_37n -1 known rna NULL NULL 0.003 - - - no_errors ZNF573 HGNC ENSG00000189144 31 0 0.00 16 6 27.27 - - -