Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All AKR1CL1 0 genome.wustl.edu 37 10 5200861 5200861 + Missense_Mutation SNP C C A TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 10 5200861 5200861 C A SNP AKR1CL1 ENST00000473890 human ensembl 69_37n -1 novel missense c.101 p.C34F 1.000 pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr - no_errors AKR1CL1 HGNC ENSG00000196326 9 0 0.00 19 9 32.14 - - - CCNI2 0 genome.wustl.edu 37 5 132084048 132084048 + Missense_Mutation SNP T T C TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 5 132084048 132084048 T C SNP CCNI2 ENST00000378731 human ensembl 69_37n +1 novel missense c.439 p.C147R 0.036 superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E - no_errors CCNI2 HGNC ENSG00000205089 113 0 0.00 126 17 11.81 - - - CDH1 0 genome.wustl.edu 37 16 68772218 68772218 + Nonsense_Mutation SNP C C T TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 16 68772218 68772218 C T SNP CDH1 ENST00000261769 human ensembl 69_37n +1 known nonsense c.67 p.Q23* 0.982 superfamily_Cadherin-like pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 42 0 0.00 34 4 10.53 - - - DEPDC1 0 genome.wustl.edu 37 1 68954121 68954121 + Frame_Shift_Del DEL T T - TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 1 68954121 68954121 T - DEL DEPDC1 ENST00000456315 human ensembl 69_37n -1 known frame_shift_del c.657 p.Q219fs 0.702 NULL pfam_DEP_dom,superfamily_Rho_GTPase_activation_prot,smart_DEP_dom,pfscan_DEP_dom - no_errors DEPDC1 HGNC ENSG00000024526 377 0 0.00 558 64 10.24 - - - GRID2IP 0 genome.wustl.edu 37 7 6545509 6545509 + Silent SNP C C A TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 7 6545509 6545509 C A SNP GRID2IP ENST00000457091 human ensembl 69_37n -1 putative silent c.2574 p.L858 1.000 pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg pfam_FH2_actin-bd,pfam_PDZ,superfamily_FH2_actin-bd,superfamily_PDZ,smart_PDZ,smart_Actin-bd_FH2/DRF_autoreg,pfscan_PDZ - no_errors GRID2IP HGNC ENSG00000215045 86 0 0.00 96 11 10.19 - - - KCNF1 0 genome.wustl.edu 37 2 11053551 11053551 + Silent SNP G G A TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 2 11053551 11053551 G A SNP KCNF1 ENST00000295082 human ensembl 69_37n +1 known silent c.999 p.V333 1.000 pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_PKD1_2_channel,prints_K_chnl,prints_K_chnl_volt-dep_Kv pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_PKD1_2_channel,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv6 - no_errors KCNF1 HGNC ENSG00000162975 137 0 0.00 89 10 10.10 - - - KIR3DL2 0 genome.wustl.edu 37 19 55363677 55363677 + Missense_Mutation SNP C C T TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 19 55363677 55363677 C T SNP KIR3DL2 ENST00000326321 human ensembl 69_37n +1 known missense c.295 p.R99C 0.000 smart_Ig_sub pfam_Immunoglobulin,smart_Ig_sub - no_errors KIR3DL2 HGNC ENSG00000240403 58 0 0.00 74 23 23.71 - - - MGMT 0 genome.wustl.edu 37 10 131565093 131565093 + Silent SNP C C T TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 10 131565093 131565093 C T SNP MGMT ENST00000306010 human ensembl 69_37n +1 known silent c.549 p.S183 0.984 pfam_MethylDNA_cys_MeTrfase_DNA-bd,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd pfam_MethylDNA_cys_MeTrfase_DNA-bd,pfam_MethylG_MeTrfase,superfamily_MethylDNA_cys_MeTrfase_DNA-bd,tigrfam_MethylDNA_cys_MeTrfase_DNA-bd - no_errors MGMT HGNC ENSG00000170430 58 0 0.00 55 11 16.42 - - - MYH7 0 genome.wustl.edu 37 14 23899017 23899017 + Missense_Mutation SNP G G A TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 14 23899017 23899017 G A SNP MYH7 ENST00000355349 human ensembl 69_37n -1 known missense c.1105 p.R369W 0.995 pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom - no_errors MYH7 HGNC ENSG00000092054 241 0 0.00 209 27 11.34 - - - OBSCN 0 genome.wustl.edu 37 1 228559663 228559663 + Missense_Mutation SNP C C T TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 1 228559663 228559663 C T SNP OBSCN ENST00000422127 human ensembl 69_37n +1 known missense c.21184 p.P7062S 0.000 NULL pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_DH-domain,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_Fibronectin_type3,superfamily_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_IQ_motif_EF-hand-BS,smart_DH-domain,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain - no_errors OBSCN HGNC ENSG00000154358 66 0 0.00 51 9 15.00 - - - PIK3CA 0 genome.wustl.edu 37 3 178936083 178936083 + Missense_Mutation SNP A A G TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 3 178936083 178936083 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1625 p.E542G 1.000 pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 125 0 0.00 136 19 12.26 - - - PITPNM3 0 genome.wustl.edu 37 17 6380354 6380354 + Silent SNP G G A TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 17 6380354 6380354 G A SNP PITPNM3 ENST00000262483 human ensembl 69_37n -1 known silent c.1080 p.L360 0.992 NULL pfam_DDHD,pfam_LNS2,superfamily_HAD-like_dom,smart_LNS2,pfscan_DDHD - no_errors PITPNM3 HGNC ENSG00000091622 115 0 0.00 122 16 11.59 - - - PNMA2 0 genome.wustl.edu 37 8 26365666 26365666 + Missense_Mutation SNP C C G TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 8 26365666 26365666 C G SNP PNMA2 ENST00000522362 human ensembl 69_37n -1 known missense c.606 p.K202N 1.000 NULL pfam_Retrotrans_gag - no_errors PNMA2 HGNC ENSG00000240694 54 0 0.00 59 8 11.94 - - - PPP1R16B 0 genome.wustl.edu 37 20 37546989 37546989 + Missense_Mutation SNP G G A TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 20 37546989 37546989 G A SNP PPP1R16B ENST00000299824 human ensembl 69_37n +1 known missense c.1384 p.V462M 0.000 pirsf_Pase-1_reg_su_16AB_euk pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pirsf_Pase-1_reg_su_16AB_euk,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom - no_errors PPP1R16B HGNC ENSG00000101445 73 0 0.00 64 11 14.67 - - - RIPK1 0 genome.wustl.edu 37 6 3077012 3077012 + RNA DEL G G - TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 6 3077012 3077012 G - DEL RIPK1 ENST00000490396 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors RIPK1 HGNC ENSG00000137275 36 0 0.00 46 6 11.54 - - - TAGLN 0 genome.wustl.edu 37 11 117075033 117075033 + Missense_Mutation SNP C C A TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 11 117075033 117075033 C A SNP TAGLN ENST00000529622 human ensembl 69_37n +1 putative missense c.413 p.P138Q 0.934 pfam_Calponin_repeat,pfscan_Calponin_repeat,prints_SM22_calponin pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_Transgelin,prints_SM22_calponin - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region TAGLN HGNC ENSG00000149591 84 0 0.00 116 16 11.94 - - - TSC2 0 genome.wustl.edu 37 16 2134569 2134569 + Missense_Mutation SNP C C G TCGA-B6-A0RQ-01A-11D-A10Y-09 TCGA-B6-A0RQ-10A-01D-A110-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx f425edf3-0d08-49bf-94f6-f03343873a6c fe1d77e9-f21d-4914-ae1a-2cc6dd6f8cba 16 2134569 2134569 C G SNP TSC2 ENST00000219476 human ensembl 69_37n +1 known missense c.4346 p.S1449C 0.007 NULL pfam_Tuberin-type_domain,pfam_Tuberin_N,pfam_Rap_GAP,superfamily_ARM-type_fold,prints_Tuberin,pfscan_Rap_GAP - no_errors TSC2 HGNC ENSG00000103197 19 0 0.00 27 7 20.59 - - -