Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADNP 0 genome.wustl.edu 37 20 49509507 49509508 + Frame_Shift_Ins INS - - GTAA TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 20 49509507 49509508 - GTAA INS ADNP ENST00000349014 human ensembl 69_37n -1 known frame_shift_ins c.1744_1743 p.H581fs 1.000:0.989 NULL pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2 - no_errors ADNP HGNC ENSG00000101126 83 0 0.00 49 20 28.99 - - - ASIC1 0 genome.wustl.edu 37 12 50474963 50474964 + Frame_Shift_Ins INS - - T TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 12 50474963 50474964 - T INS ASIC1 ENST00000228468 human ensembl 69_37n +1 known frame_shift_ins c.1514_1515 p.E505fs 1.000:1.000 NULL pfam_Na+channel_ASC,prints_Na+channel_ASC - no_errors ASIC1 HGNC ENSG00000110881 12 0 0.00 5 2 28.57 - - - BCL9L 0 genome.wustl.edu 37 11 118779066 118779066 + Missense_Mutation SNP C C T TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 11 118779066 118779066 C T SNP BCL9L ENST00000334801 human ensembl 69_37n -1 known missense c.325 p.G109S 1.000 NULL pfam_BCL9_beta-catenin-bd_dom - no_errors BCL9L HGNC ENSG00000186174 31 0 0.00 20 14 41.18 - - - C2orf18 0 genome.wustl.edu 37 2 26997949 26997949 + Missense_Mutation SNP C C T TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 2 26997949 26997949 C T SNP C2orf18 ENST00000344420 human ensembl 69_37n +1 known missense c.188 p.A63V 0.999 pirsf_UCP036436 pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_DMT,pfam_DUF250,pfam_UAA,pirsf_UCP036436 - no_errors C2orf18 HGNC ENSG00000213699 37 0 0.00 36 4 10.00 - - - CARNS1 0 genome.wustl.edu 37 11 67186488 67186488 + Missense_Mutation SNP T T C TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 11 67186488 67186488 T C SNP CARNS1 ENST00000445895 human ensembl 69_37n +1 known missense c.626 p.L209P 1.000 NULL superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp - no_errors CARNS1 HGNC ENSG00000172508 11 0 0.00 10 5 33.33 - - - CASZ1 0 genome.wustl.edu 37 1 10714015 10714015 + Missense_Mutation SNP G G A TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 1 10714015 10714015 G A SNP CASZ1 ENST00000377022 human ensembl 69_37n -1 known missense c.2099 p.S700L 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors CASZ1 HGNC ENSG00000130940 16 0 0.00 22 16 42.11 - - - CBFB 0 genome.wustl.edu 37 16 67100608 67100608 + Missense_Mutation SNP T T G TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 16 67100608 67100608 T G SNP CBFB ENST00000290858 human ensembl 69_37n +1 known missense c.306 p.I102M 1.000 pfam_CBF_beta,superfamily_CBF_beta pfam_CBF_beta,superfamily_CBF_beta - no_errors CBFB HGNC ENSG00000067955 131 1 0.76 20 60 75.00 - - - CDH8 0 genome.wustl.edu 37 16 62055218 62055218 + Silent SNP A A G TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 16 62055218 62055218 A G SNP CDH8 ENST00000577390 human ensembl 69_37n -1 known silent c.90 p.A30 1.000 NULL pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin - no_errors CDH8 HGNC ENSG00000150394 63 0 0.00 8 34 80.95 - - - CERS1 0 genome.wustl.edu 37 19 18994907 18994907 + Silent SNP G G A TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 19 18994907 18994907 G A SNP CERS1 ENST00000427170 human ensembl 69_37n -1 known silent c.579 p.S193 1.000 pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom - no_errors CERS1 HGNC ENSG00000223802 26 0 0.00 20 9 31.03 - - - CROCCP2 0 genome.wustl.edu 37 1 16950807 16950807 + RNA SNP C C T TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 1 16950807 16950807 C T SNP CROCCP2 ENST00000421700 human ensembl 69_37n -1 known rna NULL NULL 0.483 - - - no_errors CROCCP2 HGNC ENSG00000215908 8 0 0.00 15 4 21.05 - - - DMD 0 genome.wustl.edu 37 X 31200940 31200940 + Missense_Mutation SNP C C T TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 X 31200940 31200940 C T SNP DMD ENST00000357033 human ensembl 69_37n -1 known missense c.9889 p.V3297I 1.000 pfam_EF-hand_dom_typ2,pirsf_Dystrophin/utrophin pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ - no_errors DMD HGNC ENSG00000198947 54 0 0.00 35 15 30.00 - - - EML3 0 genome.wustl.edu 37 11 62378386 62378386 + Missense_Mutation SNP G G A TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 11 62378386 62378386 G A SNP EML3 ENST00000494448 human ensembl 69_37n -1 known missense c.406 p.R136C 0.252 NULL NULL - no_errors EML3 HGNC ENSG00000149499 25 0 0.00 13 4 23.53 - - - FAM157B 0 genome.wustl.edu 37 9 141107536 141107537 + RNA INS - - GCA TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 9 141107536 141107537 - GCA INS FAM157B ENST00000446912 human ensembl 69_37n +1 known rna NULL NULL 0.033:0.036 - - - no_errors FAM157B HGNC ENSG00000233013 30 0 0.00 34 9 20.93 - - - FOXA1 0 genome.wustl.edu 37 14 38061213 38061213 + Missense_Mutation SNP T T G TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 14 38061213 38061213 T G SNP FOXA1 ENST00000250448 human ensembl 69_37n -1 known missense c.776 p.Y259S 1.000 pfam_TF_fork_head,pfscan_TF_fork_head pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head - no_errors FOXA1 HGNC ENSG00000129514 8 0 0.00 18 7 28.00 - - - GON4L 0 genome.wustl.edu 37 1 155734834 155734834 + Missense_Mutation SNP G G A TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 1 155734834 155734834 G A SNP GON4L ENST00000368331 human ensembl 69_37n -1 known missense c.4430 p.S1477L 1.000 NULL pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom - no_errors GON4L HGNC ENSG00000116580 57 0 0.00 61 17 21.79 - - - IKZF3 0 genome.wustl.edu 37 17 37988354 37988354 + Missense_Mutation SNP C C A TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 17 37988354 37988354 C A SNP IKZF3 ENST00000346872 human ensembl 69_37n -1 known missense c.58 p.A20S 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors IKZF3 HGNC ENSG00000161405 94 0 0.00 60 40 39.60 - - - INO80 0 genome.wustl.edu 37 15 41388029 41388029 + Missense_Mutation SNP G G A TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 15 41388029 41388029 G A SNP INO80 ENST00000361937 human ensembl 69_37n -1 known missense c.241 p.L81F 1.000 NULL pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C - no_errors INO80 HGNC ENSG00000128908 59 0 0.00 32 15 31.91 - - - KCNQ5 0 genome.wustl.edu 37 6 73787578 73787578 + Missense_Mutation SNP T T C TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 6 73787578 73787578 T C SNP KCNQ5 ENST00000402622 human ensembl 69_37n +1 known missense c.886 p.S296P 1.000 pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl - no_errors KCNQ5 HGNC ENSG00000185760 129 1 0.77 111 29 20.71 - - - LILRB4 0 genome.wustl.edu 37 19 55174519 55174519 + Missense_Mutation SNP G G A TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 19 55174519 55174519 G A SNP LILRB4 ENST00000270452 human ensembl 69_37n +1 known missense c.34 p.G12R 0.682 NULL pfam_Immunoglobulin,pfscan_Ig-like - no_errors LILRB4 HGNC ENSG00000186818 22 0 0.00 14 9 39.13 - - - MAGEA4 0 genome.wustl.edu 37 X 151092941 151092941 + Missense_Mutation SNP C C T TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 X 151092941 151092941 C T SNP MAGEA4 ENST00000276344 human ensembl 69_37n +1 known missense c.805 p.R269C 0.000 pfam_MAGE,pfscan_MAGE pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE - no_errors MAGEA4 HGNC ENSG00000147381 50 0 0.00 21 29 58.00 - - - PPP3R1 0 genome.wustl.edu 37 2 68413703 68413703 + Missense_Mutation SNP C C T TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 2 68413703 68413703 C T SNP PPP3R1 ENST00000406334 human ensembl 69_37n -1 known missense c.332 p.G111E 1.000 pfscan_EF_HAND_2 pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin - no_errors PPP3R1 HGNC ENSG00000221823 125 1 0.79 66 55 45.45 - - - SERPINF2 0 genome.wustl.edu 37 17 1650702 1650702 + Missense_Mutation SNP T T C TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 17 1650702 1650702 T C SNP SERPINF2 ENST00000324015 human ensembl 69_37n +1 known missense c.611 p.I204T 1.000 pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom - no_errors SERPINF2 HGNC ENSG00000167711 31 0 0.00 13 9 40.91 - - - SETD5 0 genome.wustl.edu 37 3 9495453 9495453 + Missense_Mutation SNP A A G TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 3 9495453 9495453 A G SNP SETD5 ENST00000402198 human ensembl 69_37n +1 known missense c.2377 p.M793V 1.000 NULL pfam_SET_dom,smart_SET_dom,pfscan_SET_dom - no_errors SETD5 HGNC ENSG00000168137 48 0 0.00 40 15 27.27 - - - TBP 0 genome.wustl.edu 37 6 170871055 170871055 + Silent SNP G G A TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 6 170871055 170871055 G A SNP TBP ENST00000230354 human ensembl 69_37n +1 known silent c.231 p.Q77 0.993 NULL pfam_TBP,prints_TBP - no_errors TBP HGNC ENSG00000112592 8 0 0.00 14 24 61.54 - - - TRIP10 0 genome.wustl.edu 37 19 6743794 6743794 + Frame_Shift_Del DEL T T - TCGA-BH-A1FL-01A-11D-A13L-09 TCGA-BH-A1FL-11A-13D-A13O-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bb84cbb1-7244-4d92-8977-a37dbafc47b4 d669a784-1fb6-417f-b4e6-34486d51f2e0 19 6743794 6743794 T - DEL TRIP10 ENST00000313244 human ensembl 69_37n +1 known frame_shift_del c.589 p.F197fs 1.000 NULL pfam_FCH,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain - no_errors TRIP10 HGNC ENSG00000125733 81 0 0.00 43 23 34.85 - - -