Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All APOB 0 genome.wustl.edu 37 2 21233395 21233395 + Silent SNP C C T TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 2 21233395 21233395 C T SNP APOB ENST00000233242 human ensembl 69_37n -1 known silent c.6345 p.L2115 0.025 NULL pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N - no_errors APOB HGNC ENSG00000084674 66 0 0.00 56 15 21.13 - - - COPS4 0 genome.wustl.edu 37 4 83971138 83971138 + Splice_Site SNP G G A TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 4 83971138 83971138 G A SNP COPS4 ENST00000264389 human ensembl 69_37n +1 known splice_site c.410+1 e4+1 1.000 - - - no_errors COPS4 HGNC ENSG00000138663 74 0 0.00 50 8 13.79 - - - FAM47B 0 genome.wustl.edu 37 X 34962644 34962644 + Missense_Mutation SNP C C A TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 X 34962644 34962644 C A SNP FAM47B ENST00000329357 human ensembl 69_37n +1 known missense c.1696 p.P566T 0.382 NULL NULL - no_errors FAM47B HGNC ENSG00000189132 48 0 0.00 46 12 20.69 - - - HS3ST4 0 genome.wustl.edu 37 16 26147094 26147094 + Missense_Mutation SNP C C G TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 16 26147094 26147094 C G SNP HS3ST4 ENST00000331351 human ensembl 69_37n +1 known missense c.896 p.T299R 1.000 pfam_Sulfotransferase_dom pfam_Sulfotransferase_dom - no_errors HS3ST4 HGNC ENSG00000182601 34 0 0.00 33 9 21.43 - - - LAX1 0 genome.wustl.edu 37 1 203743056 203743056 + Silent SNP A A T TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 1 203743056 203743056 A T SNP LAX1 ENST00000442561 human ensembl 69_37n +1 known silent c.444 p.T148 0.000 NULL NULL - no_errors LAX1 HGNC ENSG00000122188 27 0 0.00 24 14 36.84 - - - MAP3K1 0 genome.wustl.edu 37 5 56155725 56155726 + Frame_Shift_Del DEL AG AG - TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 AG AG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 5 56155725 56155726 AG - DEL MAP3K1 ENST00000399503 human ensembl 69_37n +1 novel frame_shift_del c.817_818 p.R273fs 0.959:0.996 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom - no_errors MAP3K1 HGNC ENSG00000095015 24 0 0.00 20 7 25.93 - - - MAP3K13 0 genome.wustl.edu 37 3 185146386 185146386 + Frame_Shift_Del DEL A A - TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 3 185146386 185146386 A - DEL MAP3K13 ENST00000265026 human ensembl 69_37n +1 known frame_shift_del c.17 p.E6fs 1.000 pirsf_MAP3K12_MAP3K13 pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors MAP3K13 HGNC ENSG00000073803 16 0 0.00 4 2 33.33 - - - MYCBP2 0 genome.wustl.edu 37 13 77748601 77748601 + Silent SNP G G A TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 13 77748601 77748601 G A SNP MYCBP2 ENST00000407578 human ensembl 69_37n -1 known silent c.5496 p.R1832 0.980 pfam_PHR,superfamily_ARM-type_fold pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens - no_errors MYCBP2 HGNC ENSG00000005810 56 0 0.00 59 17 22.37 - - - PCDHGA9 0 genome.wustl.edu 37 5 140784341 140784341 + Silent SNP C C T TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 5 140784341 140784341 C T SNP PCDHGA9 ENST00000573521 human ensembl 69_37n +1 known silent c.1822 p.L608 0.998 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors PCDHGA9 HGNC ENSG00000261934 21 0 0.00 12 11 47.83 - - - PIK3CA 0 genome.wustl.edu 37 3 178952085 178952085 + Missense_Mutation SNP A A G TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 3 178952085 178952085 A G SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.3140 p.H1047R 1.000 superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 45 0 0.00 43 7 14.00 - - - RIC8B 0 genome.wustl.edu 37 12 107254119 107254119 + Silent SNP A A G TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 12 107254119 107254119 A G SNP RIC8B ENST00000392837 human ensembl 69_37n +1 known silent c.1380 p.G460 1.000 pfam_Gua_nucleotide_exch_fac_Ric8 pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn - no_errors RIC8B HGNC ENSG00000111785 39 0 0.00 34 7 17.07 - - - SYT9 0 genome.wustl.edu 37 11 7324289 7324289 + Missense_Mutation SNP G G A TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 11 7324289 7324289 G A SNP SYT9 ENST00000524820 human ensembl 69_37n +1 known missense c.22 p.D8N 1.000 NULL pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region SYT9 HGNC ENSG00000170743 59 0 0.00 84 17 16.83 - - - TNFRSF11B 0 genome.wustl.edu 37 8 119936777 119936777 + Missense_Mutation SNP C C T TCGA-D8-A1JU-01A-11D-A13L-09 TCGA-D8-A1JU-10A-01D-A188-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 7bff4f75-749d-4a63-9a64-0bcf1cd615ea 3cfbf5a4-d74a-40d3-9598-2e7835ef1440 8 119936777 119936777 C T SNP TNFRSF11B ENST00000297350 human ensembl 69_37n -1 known missense c.1042 p.A348T 0.569 pirsf_TNFR_11B,pfam_Death,superfamily_DEATH-like,smart_Death pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg - no_errors TNFRSF11B HGNC ENSG00000164761 60 0 0.00 95 32 25.20 - - -