Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADAM21P1 0 genome.wustl.edu 37 14 70714162 70714162 + RNA SNP A A G TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 14 70714162 70714162 A G SNP ADAM21P1 ENST00000530196 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors ADAM21P1 HGNC ENSG00000235812 49 0 0.00 90 15 14.29 - - - ADAMTSL3 0 genome.wustl.edu 37 15 84506850 84506850 + Missense_Mutation SNP T T A TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 15 84506850 84506850 T A SNP ADAMTSL3 ENST00000286744 human ensembl 69_37n +1 known missense c.610 p.C204S 1.000 prints_Peptidase_M12B_ADAM-TS pfam_Thrombospondin_1_rpt,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like,prints_Peptidase_M12B_ADAM-TS - no_errors ADAMTSL3 HGNC ENSG00000156218 20 0 0.00 24 10 29.41 - - - ALMS1P 0 genome.wustl.edu 37 2 73912256 73912256 + RNA SNP G G A TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 2 73912256 73912256 G A SNP ALMS1P ENST00000450720 human ensembl 69_37n +1 known rna NULL NULL 0.001 - - - no_errors ALMS1P HGNC ENSG00000163016 17 0 0.00 28 7 20.00 - - - CLEC16A 0 genome.wustl.edu 37 16 11154805 11154805 + Missense_Mutation SNP G G A TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 16 11154805 11154805 G A SNP CLEC16A ENST00000409790 human ensembl 69_37n +1 known missense c.2042 p.R681Q 1.000 NULL pfam_Uncharacterised_FPL - no_errors CLEC16A HGNC ENSG00000038532 49 0 0.00 104 27 20.45 - - - CMIP 0 genome.wustl.edu 37 16 81737574 81737574 + Missense_Mutation SNP G G T TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 16 81737574 81737574 G T SNP CMIP ENST00000537098 human ensembl 69_37n +1 known missense c.1975 p.G659C 0.998 NULL NULL - no_errors CMIP HGNC ENSG00000153815 27 0 0.00 31 16 34.04 - - - COLEC11 0 genome.wustl.edu 37 2 3691463 3691463 + Missense_Mutation SNP G G A TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 2 3691463 3691463 G A SNP COLEC11 ENST00000418971 human ensembl 69_37n +1 known missense c.613 p.A205T 0.255 pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin pfam_C-type_lectin,pfam_Collagen,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin - no_errors COLEC11 HGNC ENSG00000118004 20 0 0.00 36 13 26.53 - - - DGCR14 0 genome.wustl.edu 37 22 19127488 19127488 + Silent SNP G G C TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 22 19127488 19127488 G C SNP DGCR14 ENST00000252137 human ensembl 69_37n -1 known silent c.450 p.V150 0.997 pfam_Nuclear_protein_DGCR14 pfam_Nuclear_protein_DGCR14 - no_errors DGCR14 HGNC ENSG00000100056 29 0 0.00 48 17 26.15 - - - HSF4 0 genome.wustl.edu 37 16 67201760 67201760 + Frame_Shift_Del DEL C C - TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 16 67201760 67201760 C - DEL HSF4 ENST00000264009 human ensembl 69_37n +1 known frame_shift_del c.992 p.I332fs 1.000 NULL pfam_HSF_DNA-bd,smart_HSF_DNA-bd,prints_HSF_DNA-bd - no_errors HSF4 HGNC ENSG00000102878 15 0 0.00 28 9 24.32 - - - IGHM 0 genome.wustl.edu 37 14 106322075 106322075 + Silent SNP G G A TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 14 106322075 106322075 G A SNP IGHM ENST00000390559 human ensembl 69_37n -1 known silent c.249 p.D83 0.000 pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_C1-set,pfscan_Ig-like - no_start_codon IGHM HGNC ENSG00000211899 56 0 0.00 105 13 11.02 - - - MACF1 0 genome.wustl.edu 37 1 39798985 39798985 + Missense_Mutation SNP A A G TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 1 39798985 39798985 A G SNP MACF1 ENST00000567887 human ensembl 69_37n +1 putative missense c.6836 p.E2279G 0.234 superfamily_RNaseH-like_dom pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_RNaseH-like_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2 - no_errors MACF1 HGNC ENSG00000127603 36 0 0.00 52 19 26.76 - - - NR2C2 0 genome.wustl.edu 37 3 15094988 15094988 + Missense_Mutation SNP G G C TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 3 15094988 15094988 G C SNP NR2C2 ENST00000439011 human ensembl 69_37n +1 putative missense c.579 p.K193N 0.001 NULL pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Str_hrmn_rcpt - no_start_codon NR2C2 HGNC ENSG00000177463 73 0 0.00 114 32 21.77 - - - PIK3C2G 0 genome.wustl.edu 37 12 18443835 18443835 + Missense_Mutation SNP A A C TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 12 18443835 18443835 A C SNP PIK3C2G ENST00000538779 human ensembl 69_37n +1 known missense c.808 p.K270Q 1.000 NULL pfam_PI3/4_kinase_cat_dom,pfam_PInositide-3_kin_accessory_dom,pfam_PI3K_C2_dom,pfam_Phox,pfam_PI3K_Ras-bd_dom,pfam_C2_Ca-dep,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Phox,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,smart_Phox,smart_C2_Ca-dep,pfscan_Phox,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3C2G HGNC ENSG00000139144 79 0 0.00 128 30 18.87 - - - PTP4A2 0 genome.wustl.edu 37 1 32384627 32384627 + Missense_Mutation SNP T T A TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 1 32384627 32384627 T A SNP PTP4A2 ENST00000344035 human ensembl 69_37n -1 known missense c.40 p.M14L 1.000 NULL pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Dual-sp_phosphatase_cat-dom,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase - no_errors PTP4A2 HGNC ENSG00000184007 95 0 0.00 152 48 24.00 - - - RASGEF1A 0 genome.wustl.edu 37 10 43696327 43696327 + Missense_Mutation SNP T T A TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 10 43696327 43696327 T A SNP RASGEF1A ENST00000395809 human ensembl 69_37n -1 known missense c.469 p.T157S 1.000 superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N - no_errors RASGEF1A HGNC ENSG00000198915 49 0 0.00 70 17 19.54 - - - RPGRIP1L 0 genome.wustl.edu 37 16 53706824 53706824 + Silent SNP T T C TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 16 53706824 53706824 T C SNP RPGRIP1L ENST00000379925 human ensembl 69_37n -1 known silent c.987 p.K329 0.921 NULL pfam_DUF3250,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting - no_errors RPGRIP1L HGNC ENSG00000103494 78 0 0.00 82 21 20.39 - - - SETD2 0 genome.wustl.edu 37 3 47058736 47058737 + Frame_Shift_Ins INS - - T TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 3 47058736 47058737 - T INS SETD2 ENST00000409792 human ensembl 69_37n -1 known frame_shift_ins c.7542_7541 p.H2514fs 0.914:1.000 pfam_SRI pfam_SRI,pfam_SET_dom,pfam_WW_Rsp5_WWP,superfamily_WW_Rsp5_WWP,superfamily_Ferritin/RR-like,smart_AWS,smart_SET_dom,smart_Post-SET_dom,smart_WW_Rsp5_WWP,pfscan_AWS,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_WW_Rsp5_WWP - no_errors SETD2 HGNC ENSG00000181555 131 0 0.00 179 20 10.05 - - - SLC9A1 0 genome.wustl.edu 37 1 27427750 27427750 + Missense_Mutation SNP G G T TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 1 27427750 27427750 G T SNP SLC9A1 ENST00000263980 human ensembl 69_37n -1 known missense c.2054 p.T685K 1.000 NULL pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger - no_errors SLC9A1 HGNC ENSG00000090020 31 0 0.00 31 4 11.43 - - - ZDHHC11 0 genome.wustl.edu 37 5 843815 843815 + Silent SNP C C T TCGA-E2-A1IK-01A-11D-A17G-09 TCGA-E2-A1IK-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 8577ac01-1274-4bd5-ab04-380eaa78d95b 867338db-8269-4f32-b4f2-1c4b9d2566f2 5 843815 843815 C T SNP ZDHHC11 ENST00000283441 human ensembl 69_37n -1 known silent c.528 p.S176 0.590 pfam_Znf_DHHC_palmitoyltrfase pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase - no_errors ZDHHC11 HGNC ENSG00000188818 15 0 0.00 34 12 26.09 - - -