Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ANKRD20A4 0 genome.wustl.edu 37 9 69421983 69421983 + Missense_Mutation SNP G G C TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 9 69421983 69421983 G C SNP ANKRD20A4 ENST00000357336 human ensembl 69_37n +1 known missense c.1447 p.V483L 0.004 NULL pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors ANKRD20A4 HGNC ENSG00000172014 15 0 0.00 8 3 27.27 - - - COMMD9 0 genome.wustl.edu 37 11 36300038 36300038 + Silent SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 11 36300038 36300038 G A SNP COMMD9 ENST00000263401 human ensembl 69_37n -1 known silent c.306 p.I102 1.000 pfam_HCaRG pfam_HCaRG - no_errors COMMD9 HGNC ENSG00000110442 137 0 0.00 75 34 31.19 - - - CTCF 0 genome.wustl.edu 37 16 67645418 67645418 + Missense_Mutation SNP T T C TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 16 67645418 67645418 T C SNP CTCF ENST00000264010 human ensembl 69_37n +1 known missense c.683 p.F228S 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors CTCF HGNC ENSG00000102974 84 0 0.00 32 21 39.62 - - - CTNNA2 0 genome.wustl.edu 37 2 80874927 80874927 + Missense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 2 80874927 80874927 G A SNP CTNNA2 ENST00000361291 human ensembl 69_37n +1 known missense c.2750 p.R917Q 1.000 NULL pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin - no_errors CTNNA2 HGNC ENSG00000066032 63 0 0.00 33 16 32.65 - - - CYP4F11 0 genome.wustl.edu 37 19 16040359 16040359 + Missense_Mutation SNP T T C TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 19 16040359 16040359 T C SNP CYP4F11 ENST00000248041 human ensembl 69_37n -1 known missense c.251 p.Y84C 0.000 pfam_Cyt_P450,superfamily_Cyt_P450 pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II - no_errors CYP4F11 HGNC ENSG00000171903 121 0 0.00 50 6 10.53 - - - DCBLD1 0 genome.wustl.edu 37 6 117861948 117861948 + Missense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 6 117861948 117861948 G A SNP DCBLD1 ENST00000338728 human ensembl 69_37n +1 known missense c.1219 p.V407M 1.000 pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom pfam_Coagulation_fac_5/8-C_type_dom,pfam_LCCL,pfam_CUB,superfamily_Galactose-bd-like,superfamily_LCCL,superfamily_CUB,smart_CUB,smart_LCCL,smart_Coagulation_fac_5/8-C_type_dom,pfscan_CUB,pfscan_Coagulation_fac_5/8-C_type_dom,pfscan_LCCL - no_errors DCBLD1 HGNC ENSG00000164465 77 0 0.00 22 14 38.89 - - - DNAH12 0 genome.wustl.edu 37 3 57357142 57357142 + Missense_Mutation SNP G G C TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 3 57357142 57357142 G C SNP DNAH12 ENST00000351747 human ensembl 69_37n -1 known missense c.7672 p.L2558V 1.000 pfam_Dynein_heavy pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase - no_errors DNAH12 HGNC ENSG00000174844 194 0 0.00 81 26 24.30 - - - DOCK11 0 genome.wustl.edu 37 X 117785950 117785950 + Silent SNP G G C TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c X 117785950 117785950 G C SNP DOCK11 ENST00000276202 human ensembl 69_37n +1 known silent c.4605 p.L1535 1.000 NULL pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors DOCK11 HGNC ENSG00000147251 89 0 0.00 73 24 24.74 - - - EGR1 0 genome.wustl.edu 37 5 137803326 137803326 + Silent SNP C C T TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 5 137803326 137803326 C T SNP EGR1 ENST00000239938 human ensembl 69_37n +1 known silent c.1188 p.F396 0.930 smart_Znf_C2H2-like,pfscan_Znf_C2H2 pfam_DUF3432,pfam_DUF3446,pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors EGR1 HGNC ENSG00000120738 82 0 0.00 24 9 27.27 - - - FLRT2 0 genome.wustl.edu 37 14 86088051 86088051 + Missense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 14 86088051 86088051 G A SNP FLRT2 ENST00000330753 human ensembl 69_37n +1 known missense c.193 p.V65I 1.000 smart_LRR-contain_N pfam_Leu-rich_rpt,pfam_Fibronectin_type3,pfam_LRR-contain_N,superfamily_Fibronectin_type3,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,pfscan_Fibronectin_type3 - no_errors FLRT2 HGNC ENSG00000185070 103 0 0.00 40 17 29.82 - - - HIVEP3 0 genome.wustl.edu 37 1 42049238 42049238 + Missense_Mutation SNP C C T TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 1 42049238 42049238 C T SNP HIVEP3 ENST00000247584 human ensembl 69_37n -1 known missense c.1231 p.A411T 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors HIVEP3 HGNC ENSG00000127124 136 0 0.00 27 19 41.30 - - - LDOC1 0 genome.wustl.edu 37 X 140270877 140270877 + Missense_Mutation SNP C C T TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c X 140270877 140270877 C T SNP LDOC1 ENST00000370526 human ensembl 69_37n -1 known missense c.330 p.M110I 0.927 NULL NULL - no_errors LDOC1 HGNC ENSG00000182195 113 0 0.00 35 11 23.91 - - - METTL21C 0 genome.wustl.edu 37 13 103343304 103343304 + Missense_Mutation SNP C C G TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 13 103343304 103343304 C G SNP METTL21C ENST00000267273 human ensembl 69_37n -1 known missense c.141 p.K47N 0.000 NULL pfam_Nicotinamide_N-MeTfrase-like - no_errors METTL21C HGNC ENSG00000139780 153 0 0.00 91 16 14.81 - - - OSBPL1A 0 genome.wustl.edu 37 18 21894248 21894248 + Missense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 18 21894248 21894248 G A SNP OSBPL1A ENST00000319481 human ensembl 69_37n -1 known missense c.934 p.R312W 0.997 smart_Pleckstrin_homology,pfscan_Pleckstrin_homology pfam_Oxysterol-bd,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Pleckstrin_homology,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,prints_Ankyrin_rpt - no_errors OSBPL1A HGNC ENSG00000141447 88 0 0.00 50 7 12.28 - - - PFKM 0 genome.wustl.edu 37 12 48538878 48538878 + Nonsense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 12 48538878 48538878 G A SNP PFKM ENST00000312352 human ensembl 69_37n +1 known nonsense c.2057 p.W686* 1.000 superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk - no_errors PFKM HGNC ENSG00000152556 161 0 0.00 73 25 25.51 - - - PIK3CA 0 genome.wustl.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 3 178936091 178936091 G A SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1633 p.E545K 1.000 pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 108 0 0.00 73 24 24.74 - - - PZP 0 genome.wustl.edu 37 12 9346694 9346694 + Silent SNP C C T TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 12 9346694 9346694 C T SNP PZP ENST00000261336 human ensembl 69_37n -1 known silent c.1233 p.S411 0.001 NULL pfam_A2M_comp,pfam_A2M_N_2,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_SV_autoAg,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd - no_errors PZP HGNC ENSG00000126838 136 0 0.00 98 17 14.78 - - - RPS4XP21 0 genome.wustl.edu 37 19 34583729 34583729 + Silent SNP A A G TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 19 34583729 34583729 A G SNP RPS4XP21 ENST00000469064 human ensembl 69_37n -1 putative silent c.520 p.L174 1.000 pfam_Ribosomal_S4e_central,pirsf_Ribosomal_S4e pfam_Ribosomal_S4e_central,pfam_Ribosomal_S4e_N,pirsf_Ribosomal_S4e - no_errors RPS4XP21 HGNC ENSG00000186008 8 0 0.00 4 5 55.56 - - - SDF4 0 genome.wustl.edu 37 1 1163972 1163972 + Missense_Mutation SNP C C T TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 1 1163972 1163972 C T SNP SDF4 ENST00000360001 human ensembl 69_37n -1 known missense c.202 p.E68K 1.000 NULL smart_EF_hand_Ca-bd,pfscan_EF_HAND_2 - no_errors SDF4 HGNC ENSG00000078808 41 0 0.00 9 4 30.77 - - - ST18 0 genome.wustl.edu 37 8 53074080 53074080 + Silent SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 8 53074080 53074080 G A SNP ST18 ENST00000276480 human ensembl 69_37n -1 known silent c.1449 p.I483 1.000 pfam_Myelin_TF pfam_Myelin_TF,pfam_Znf_C2HC - no_errors ST18 HGNC ENSG00000147488 220 0 0.00 157 26 14.13 - - - ST6GALNAC3 0 genome.wustl.edu 37 1 76877751 76877751 + Missense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 1 76877751 76877751 G A SNP ST6GALNAC3 ENST00000328299 human ensembl 69_37n +1 known missense c.272 p.G91D 1.000 pfam_Glyco_trans_29 pfam_Glyco_trans_29 - no_errors ST6GALNAC3 HGNC ENSG00000184005 115 0 0.00 52 17 24.29 - - - STAG2 0 genome.wustl.edu 37 X 123181291 123181291 + Missense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c X 123181291 123181291 G A SNP STAG2 ENST00000218089 human ensembl 69_37n +1 known missense c.755 p.R252Q 1.000 pfam_STAG,superfamily_ARM-type_fold pfam_STAG,superfamily_ARM-type_fold - no_errors STAG2 HGNC ENSG00000101972 79 0 0.00 52 14 21.21 - - - THOC2 0 genome.wustl.edu 37 X 122840715 122840715 + Missense_Mutation SNP T T A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c X 122840715 122840715 T A SNP THOC2 ENST00000245838 human ensembl 69_37n -1 known missense c.215 p.D72V 1.000 NULL pfam_THO_THOC2_C,pfam_THO_THOC2_N - no_errors THOC2 HGNC ENSG00000125676 114 0 0.00 84 27 24.11 - - - TMPRSS4 0 genome.wustl.edu 37 11 117982545 117982545 + Missense_Mutation SNP G G A TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 11 117982545 117982545 G A SNP TMPRSS4 ENST00000437212 human ensembl 69_37n +1 known missense c.673 p.D225N 0.063 pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6 pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,pfam_LDrepeatLR_classA_rpt,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Srcr_rcpt-rel,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_Srcr_rcpt-rel,smart_Peptidase_S1_S6,pfscan_Srcr_rcpt,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A - no_errors TMPRSS4 HGNC ENSG00000137648 73 0 0.00 15 6 28.57 - - - TTN 0 genome.wustl.edu 37 2 179615666 179615666 + Missense_Mutation SNP C C T TCGA-E9-A1R0-01A-22D-A16D-09 TCGA-E9-A1R0-10A-01D-A16D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c09eaa03-c14c-4a96-a505-4d999e45270e ff0a6768-52d3-43fb-a32f-af125579a86c 2 179615666 179615666 C T SNP TTN ENST00000360870 human ensembl 69_37n -1 known missense c.11461 p.D3821N 0.116 NULL pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Titin_Z,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors TTN HGNC ENSG00000155657 89 0 0.00 72 23 24.21 - - -