Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADAM29 0 genome.wustl.edu 37 4 175897839 175897839 + Missense_Mutation SNP C C G TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 4 175897839 175897839 C G SNP ADAM29 ENST00000359240 human ensembl 69_37n +1 known missense c.1163 p.T388R 0.000 pfscan_Peptidase_M12B pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin - no_errors ADAM29 HGNC ENSG00000168594 81 0 0.00 41 26 38.81 - - - ASIC1 0 genome.wustl.edu 37 12 50452677 50452677 + Missense_Mutation SNP G G A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 12 50452677 50452677 G A SNP ASIC1 ENST00000228468 human ensembl 69_37n +1 known missense c.128 p.R43Q 1.000 pfam_Na+channel_ASC,prints_Na+channel_ASC pfam_Na+channel_ASC,prints_Na+channel_ASC - no_errors ASIC1 HGNC ENSG00000110881 36 0 0.00 25 12 32.43 - - - CASP8 0 genome.wustl.edu 37 2 202141586 202141586 + Missense_Mutation SNP C C T TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 2 202141586 202141586 C T SNP CASP8 ENST00000358485 human ensembl 69_37n +1 known missense c.874 p.R292W 1.000 superfamily_DEATH-like,smart_Pept_C14_p45_core,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core pfam_DED,pfam_Pept_C14_cat,superfamily_DEATH-like,smart_DED,smart_Pept_C14_p45_core,pfscan_DED,pfscan_Pept_C14_p10,pfscan_Pept_C14_ICE_p20,prints_Pept_C14_p45_core - no_errors CASP8 HGNC ENSG00000064012 46 0 0.00 55 10 15.38 - - - CCDC135 0 genome.wustl.edu 37 16 57760065 57760065 + Missense_Mutation SNP G G A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 16 57760065 57760065 G A SNP CCDC135 ENST00000360716 human ensembl 69_37n +1 known missense c.1844 p.R615H 1.000 NULL NULL - no_errors CCDC135 HGNC ENSG00000159625 19 0 0.00 8 8 50.00 - - - CLEC10A 0 genome.wustl.edu 37 17 6979420 6979420 + Missense_Mutation SNP C C G TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 17 6979420 6979420 C G SNP CLEC10A ENST00000254868 human ensembl 69_37n -1 known missense c.404 p.C135S 0.000 NULL pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII - no_errors CLEC10A HGNC ENSG00000132514 29 0 0.00 21 5 19.23 - - - CNTN3 0 genome.wustl.edu 37 3 74315673 74315673 + Frame_Shift_Del DEL T T - TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 3 74315673 74315673 T - DEL CNTN3 ENST00000263665 human ensembl 69_37n -1 known frame_shift_del c.2945 p.D982fs 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors CNTN3 HGNC ENSG00000113805 95 0 0.00 78 26 24.53 - - - DHCR24 0 genome.wustl.edu 37 1 55331049 55331049 + Missense_Mutation SNP C C T TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 1 55331049 55331049 C T SNP DHCR24 ENST00000371269 human ensembl 69_37n -1 known missense c.947 p.R316Q 0.001 NULL pfam_Oxid_FAD_bind_N,superfamily_FAD-bd_2 - no_errors DHCR24 HGNC ENSG00000116133 61 0 0.00 42 21 33.33 - - - EYA3 0 genome.wustl.edu 37 1 28304975 28304975 + Missense_Mutation SNP G G C TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 1 28304975 28304975 G C SNP EYA3 ENST00000373871 human ensembl 69_37n -1 known missense c.1551 p.S517R 1.000 pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_EYA - no_errors EYA3 HGNC ENSG00000158161 83 0 0.00 88 23 20.72 - - - F13A1 0 genome.wustl.edu 37 6 6182361 6182361 + Missense_Mutation SNP A A T TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 6 6182361 6182361 A T SNP F13A1 ENST00000264870 human ensembl 69_37n -1 known missense c.1319 p.L440H 0.125 NULL pfam_Transglutaminase_C,pfam_Transglutaminase_N,pfam_Transglutaminase-like,superfamily_Ig_E-set,superfamily_Transglutaminase_C,smart_Transglutaminase-like - no_errors F13A1 HGNC ENSG00000124491 67 0 0.00 41 8 16.33 - - - FAM120A 0 genome.wustl.edu 37 9 96294650 96294650 + Silent SNP A A G TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 9 96294650 96294650 A G SNP FAM120A ENST00000446420 human ensembl 69_37n +1 known silent c.1476 p.V492 1.000 NULL NULL - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region FAM120A HGNC ENSG00000048828 13 0 0.00 15 7 31.82 - - - HDDC2 0 genome.wustl.edu 37 6 125598270 125598270 + Missense_Mutation SNP T T A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 6 125598270 125598270 T A SNP HDDC2 ENST00000398153 human ensembl 69_37n -1 known missense c.495 p.Q165H 0.980 NULL pfam_HD_domain,smart_HD/PDEase_dom - no_errors HDDC2 HGNC ENSG00000111906 78 0 0.00 61 34 35.79 - - - MAP3K1 0 genome.wustl.edu 37 5 56161678 56161678 + Missense_Mutation SNP A A G TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 5 56161678 56161678 A G SNP MAP3K1 ENST00000399503 human ensembl 69_37n +1 novel missense c.1175 p.Y392C 1.000 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom - no_errors MAP3K1 HGNC ENSG00000095015 51 0 0.00 41 22 34.92 - - - MDFIC 0 genome.wustl.edu 37 7 114619630 114619631 + Frame_Shift_Ins INS - - A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 7 114619630 114619631 - A INS MDFIC ENST00000393486 human ensembl 69_37n +1 known frame_shift_ins c.287_288 p.N98fs 1.000:1.000 NULL NULL - no_errors MDFIC HGNC ENSG00000135272 39 0 0.00 38 12 24.00 - - - MED12 0 genome.wustl.edu 37 X 70356283 70356284 + Frame_Shift_Ins INS - - CA TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 X 70356283 70356284 - CA INS MED12 ENST00000333646 human ensembl 69_37n +1 known frame_shift_ins c.5178_5179 p.L1729fs 1.000:1.000 NULL pfam_Mediator_Med12_LCEWAV,pfam_Mediator_Med12_catenin-bd,pfam_Mediator_Med12 - no_errors MED12 HGNC ENSG00000184634 21 0 0.00 30 7 18.92 - - - MUC4 0 genome.wustl.edu 37 3 195506775 195506775 + Silent SNP G G A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 3 195506775 195506775 G A SNP MUC4 ENST00000463781 human ensembl 69_37n -1 known silent c.11676 p.T3892 0.996 NULL pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom - no_errors MUC4 HGNC ENSG00000145113 30 0 0.00 56 13 18.84 - - - PRB2 0 genome.wustl.edu 37 12 11546742 11546742 + Silent SNP T T C TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 12 11546742 11546742 T C SNP PRB2 ENST00000389362 human ensembl 69_37n -1 known silent c.270 p.Q90 0.238 NULL NULL - no_errors PRB2 HGNC ENSG00000121335 15 0 0.00 73 20 21.28 - - - SRRT 0 genome.wustl.edu 37 7 100485396 100485396 + Missense_Mutation SNP G G A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 7 100485396 100485396 G A SNP SRRT ENST00000388793 human ensembl 69_37n +1 known missense c.2239 p.A747T 0.968 pfam_Arsenite-R_2 pfam_Arsenite-R_2,pfam_DUF3546 - no_errors SRRT HGNC ENSG00000087087 31 0 0.00 28 17 37.78 - - - TAT 0 genome.wustl.edu 37 16 71603760 71603761 + Frame_Shift_Ins INS - - AGGT TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 - - Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 16 71603760 71603761 - AGGT INS TAT ENST00000355962 human ensembl 69_37n -1 known frame_shift_ins c.1122_1121 p.M375fs 0.990:1.000 pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase pfam_Aminotransferase_I/II,pfam_Tyr_aminoTrfase_ubiquitination,pfam_ArAA_b-elim_lyase/Thr_aldolase,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Tyrosine_transaminase,prints_ACC_synthase,tigrfam_Tyrosine_aminoTrfase,tigrfam_TyrNic_aminoTrfase - no_errors TAT HGNC ENSG00000198650 17 0 0.00 10 4 28.57 - - - UFL1 0 genome.wustl.edu 37 6 96990799 96990799 + Missense_Mutation SNP G G A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 6 96990799 96990799 G A SNP UFL1 ENST00000369278 human ensembl 69_37n +1 known missense c.1309 p.G437R 1.000 NULL pfam_E3_UFM1_ligase_1 - no_errors UFL1 HGNC ENSG00000014123 23 0 0.00 29 19 39.58 - - - VPS13C 0 genome.wustl.edu 37 15 62214879 62214879 + Missense_Mutation SNP G G A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 15 62214879 62214879 G A SNP VPS13C ENST00000261517 human ensembl 69_37n -1 known missense c.6692 p.T2231M 0.000 NULL pfam_VPSAP,pfam_Autophagy-rel_C - no_errors VPS13C HGNC ENSG00000129003 45 0 0.00 59 7 10.61 - - - WSCD2 0 genome.wustl.edu 37 12 108626636 108626636 + Missense_Mutation SNP G G A TCGA-E9-A22H-01A-11D-A159-09 TCGA-E9-A22H-10A-01D-A17G-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 42993dbb-b99b-4b48-8038-05cf14fec886 7e563645-d8f4-4f6d-b382-2919b7e76d36 12 108626636 108626636 G A SNP WSCD2 ENST00000261400 human ensembl 69_37n +1 known missense c.1108 p.G370S 1.000 NULL pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd - no_errors WSCD2 HGNC ENSG00000075035 25 0 0.00 25 9 26.47 - - -