Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All CADM3 0 genome.wustl.edu 37 1 159163753 159163753 + Missense_Mutation SNP C C T TCGA-EW-A1PG-01A-11D-A142-09 TCGA-EW-A1PG-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bd3801e2-c5bb-4116-9ce3-97903fc6956e 01c3cc25-bb81-4cc3-a9aa-e07f44991c3f 1 159163753 159163753 C T SNP CADM3 ENST00000368124 human ensembl 69_37n +1 known missense c.716 p.A239V 0.488 pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like - no_errors CADM3 HGNC ENSG00000162706 57 0 0.00 26 7 21.21 - - - CDH26 0 genome.wustl.edu 37 20 58559787 58559787 + Nonsense_Mutation SNP T T A TCGA-EW-A1PG-01A-11D-A142-09 TCGA-EW-A1PG-10A-01D-A142-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bd3801e2-c5bb-4116-9ce3-97903fc6956e 01c3cc25-bb81-4cc3-a9aa-e07f44991c3f 20 58559787 58559787 T A SNP CDH26 ENST00000244047 human ensembl 69_37n +1 known nonsense c.635 p.L212* 0.000 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH26 HGNC ENSG00000124215 115 0 0.00 84 10 10.64 - - - FRAS1 0 genome.wustl.edu 37 4 79462038 79462038 + Missense_Mutation SNP G G A TCGA-EW-A1PG-01A-11D-A142-09 TCGA-EW-A1PG-10A-01D-A142-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bd3801e2-c5bb-4116-9ce3-97903fc6956e 01c3cc25-bb81-4cc3-a9aa-e07f44991c3f 4 79462038 79462038 G A SNP FRAS1 ENST00000512123 human ensembl 69_37n +1 novel missense c.6484 p.E2162K 0.045 NULL pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta - no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region FRAS1 HGNC ENSG00000138759 51 0 0.00 38 6 13.64 - - - IL10RB 0 genome.wustl.edu 37 21 34668541 34668541 + Missense_Mutation SNP C C T TCGA-EW-A1PG-01A-11D-A142-09 TCGA-EW-A1PG-10A-01D-A142-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bd3801e2-c5bb-4116-9ce3-97903fc6956e 01c3cc25-bb81-4cc3-a9aa-e07f44991c3f 21 34668541 34668541 C T SNP IL10RB ENST00000290200 human ensembl 69_37n +1 known missense c.857 p.S286L 0.001 NULL pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3 - no_errors IL10RB HGNC ENSG00000243646 104 0 0.00 82 11 11.83 - - - KLF7 0 genome.wustl.edu 37 2 207988824 207988824 + Nonsense_Mutation SNP A A T TCGA-EW-A1PG-01A-11D-A142-09 TCGA-EW-A1PG-10A-01D-A142-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bd3801e2-c5bb-4116-9ce3-97903fc6956e 01c3cc25-bb81-4cc3-a9aa-e07f44991c3f 2 207988824 207988824 A T SNP KLF7 ENST00000309446 human ensembl 69_37n -1 known nonsense c.407 p.L136* 1.000 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors KLF7 HGNC ENSG00000118263 66 0 0.00 43 5 10.42 - - - NEUROD1 0 genome.wustl.edu 37 2 182542799 182542799 + Missense_Mutation SNP A A T TCGA-EW-A1PG-01A-11D-A142-09 TCGA-EW-A1PG-10A-01D-A142-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bd3801e2-c5bb-4116-9ce3-97903fc6956e 01c3cc25-bb81-4cc3-a9aa-e07f44991c3f 2 182542799 182542799 A T SNP NEUROD1 ENST00000295108 human ensembl 69_37n -1 known missense c.789 p.D263E 0.436 pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd - no_errors NEUROD1 HGNC ENSG00000162992 43 0 0.00 27 7 20.59 - - - TERF2IP 0 genome.wustl.edu 37 16 75690204 75690206 + In_Frame_Del DEL GAA GAA - TCGA-EW-A1PG-01A-11D-A142-09 TCGA-EW-A1PG-10A-01D-A142-09 GAA GAA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx bd3801e2-c5bb-4116-9ce3-97903fc6956e 01c3cc25-bb81-4cc3-a9aa-e07f44991c3f 16 75690204 75690206 GAA - DEL TERF2IP ENST00000300086 human ensembl 69_37n +1 putative in_frame_del c.895_897 p.E302in_frame_del 0.540:0.562:0.617 NULL pfam_Rap1_Myb_dom,superfamily_Homeodomain-like,superfamily_BRCT_dom - no_errors TERF2IP HGNC ENSG00000166848 28 0 0.00 27 4 12.90 - - -