Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All CCDC87 0 genome.wustl.edu 37 11 66359044 66359044 + Missense_Mutation SNP C C A TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 11 66359044 66359044 C A SNP CCDC87 ENST00000333861 human ensembl 69_37n -1 known missense c.1443 p.M481I 0.988 NULL pfam_Microtubule-assoc_MAP65_ASE1 - no_errors CCDC87 HGNC ENSG00000182791 17 0 0.00 21 16 43.24 - - - CRLS1 0 genome.wustl.edu 37 20 6017787 6017787 + Nonsense_Mutation SNP C C T TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 20 6017787 6017787 C T SNP CRLS1 ENST00000378863 human ensembl 69_37n +1 known nonsense c.889 p.Q297* 1.000 NULL pfam_CDP-OH_P_trans - no_errors CRLS1 HGNC ENSG00000088766 54 0 0.00 19 29 60.42 - - - DYNC2H1 0 genome.wustl.edu 37 11 103090738 103090738 + Missense_Mutation SNP A A T TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 11 103090738 103090738 A T SNP DYNC2H1 ENST00000398093 human ensembl 69_37n +1 known missense c.8927 p.D2976V 1.000 NULL pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase - no_errors DYNC2H1 HGNC ENSG00000187240 30 0 0.00 2 15 88.24 - - - EFNB3 0 genome.wustl.edu 37 17 7611493 7611493 + Missense_Mutation SNP A A G TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 17 7611493 7611493 A G SNP EFNB3 ENST00000226091 human ensembl 69_37n +1 known missense c.340 p.T114A 1.000 pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin - no_errors EFNB3 HGNC ENSG00000108947 8 0 0.00 16 9 36.00 - - - FBXW10 0 genome.wustl.edu 37 17 18682399 18682399 + Missense_Mutation SNP A A G TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 17 18682399 18682399 A G SNP FBXW10 ENST00000308799 human ensembl 69_37n +1 known missense c.2974 p.T992A 0.609 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors FBXW10 HGNC ENSG00000171931 31 0 0.00 39 5 11.36 - - - GARS 0 genome.wustl.edu 37 7 30662033 30662033 + Missense_Mutation SNP A A T TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 7 30662033 30662033 A T SNP GARS ENST00000389266 human ensembl 69_37n +1 known missense c.1568 p.D523V 1.000 pfscan_aa-tRNA-synth_II,tigrfam_tRNA-synt_gly pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,prints_tRNA-synt_gly,tigrfam_tRNA-synt_gly - no_errors GARS HGNC ENSG00000106105 41 0 0.00 37 32 46.38 - - - GATA3 0 genome.wustl.edu 37 10 8115871 8115872 + Frame_Shift_Del DEL TC TC - TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 TC TC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 10 8115871 8115872 TC - DEL GATA3 ENST00000379328 human ensembl 69_37n +1 known frame_shift_del c.1220_1221 p.S408fs 1.000:0.767 pirsf_TF_GATA-1/2/3 pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA - no_errors GATA3 HGNC ENSG00000107485 40 0 0.00 32 22 40.74 - - - IFT140 0 genome.wustl.edu 37 16 1575310 1575310 + Missense_Mutation SNP G G A TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 16 1575310 1575310 G A SNP IFT140 ENST00000426508 human ensembl 69_37n -1 known missense c.2786 p.T929M 1.000 NULL pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors IFT140 HGNC ENSG00000187535 12 0 0.00 8 8 50.00 - - - LILRB3 0 genome.wustl.edu 37 19 54746380 54746380 + Missense_Mutation SNP C C T TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 19 54746380 54746380 C T SNP LILRB3 ENST00000407860 human ensembl 69_37n -1 known missense c.61 p.V21M 0.000 NULL smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like - no_errors LILRB3 HGNC ENSG00000204577 13 0 0.00 36 15 29.41 - - - LRP1B 0 genome.wustl.edu 37 2 141259275 141259275 + Missense_Mutation SNP T T G TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 2 141259275 141259275 T G SNP LRP1B ENST00000389484 human ensembl 69_37n -1 known missense c.8831 p.D2944A 1.000 superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt - no_errors LRP1B HGNC ENSG00000168702 57 0 0.00 13 51 78.46 - - - NRCAM 0 genome.wustl.edu 37 7 107823285 107823285 + Nonsense_Mutation SNP C C T TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 7 107823285 107823285 C T SNP NRCAM ENST00000379028 human ensembl 69_37n -1 known nonsense c.2384 p.W795* 1.000 pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3 pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like - no_errors NRCAM HGNC ENSG00000091129 28 0 0.00 39 15 27.78 - - - PLCG1 0 genome.wustl.edu 37 20 39795424 39795424 + Silent SNP G G A TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 20 39795424 39795424 G A SNP PLCG1 ENST00000244007 human ensembl 69_37n +1 known silent c.2226 p.E742 1.000 superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,pfscan_SH2,prints_SH2 pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2 - no_errors PLCG1 HGNC ENSG00000124181 40 0 0.00 87 59 40.41 - - - SAMSN1 0 genome.wustl.edu 37 21 15870837 15870837 + Missense_Mutation SNP A A G TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 21 15870837 15870837 A G SNP SAMSN1 ENST00000400566 human ensembl 69_37n -1 known missense c.845 p.I282T 1.000 pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM - no_errors SAMSN1 HGNC ENSG00000155307 85 0 0.00 57 46 44.66 - - - SEC61A2 0 genome.wustl.edu 37 10 12209886 12209886 + RNA SNP G G A TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 10 12209886 12209886 G A SNP SEC61A2 ENST00000495368 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors SEC61A2 HGNC ENSG00000065665 21 0 0.00 18 17 48.57 - - - SERPING1 0 genome.wustl.edu 37 11 57365774 57365776 + In_Frame_Del DEL CTG CTG - TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 CTG CTG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 11 57365774 57365776 CTG - DEL SERPING1 ENST00000278407 human ensembl 69_37n +1 known in_frame_del c.31_33 p.L14in_frame_del 1.000:1.000:1.000 NULL pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom - no_errors SERPING1 HGNC ENSG00000149131 12 0 0.00 4 2 33.33 - - - SHROOM4 0 genome.wustl.edu 37 X 50378351 50378351 + Missense_Mutation SNP C C T TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 X 50378351 50378351 C T SNP SHROOM4 ENST00000289292 human ensembl 69_37n -1 known missense c.722 p.R241Q 0.000 NULL pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ - no_errors SHROOM4 HGNC ENSG00000158352 28 0 0.00 19 11 36.67 - - - TMC2 0 genome.wustl.edu 37 20 2591102 2591102 + Missense_Mutation SNP C C A TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 20 2591102 2591102 C A SNP TMC2 ENST00000358864 human ensembl 69_37n +1 known missense c.1451 p.P484H 1.000 NULL pfam_TMC - no_errors TMC2 HGNC ENSG00000149488 63 0 0.00 74 53 41.73 - - - TUBB1 0 genome.wustl.edu 37 20 57597974 57597974 + Silent SNP G G A TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 20 57597974 57597974 G A SNP TUBB1 ENST00000217133 human ensembl 69_37n +1 known silent c.132 p.L44 1.000 pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Beta_tubulin pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin - no_errors TUBB1 HGNC ENSG00000101162 25 0 0.00 279 48 14.68 - - - TUBB1 0 genome.wustl.edu 37 20 57598598 57598598 + Missense_Mutation SNP G G A TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 20 57598598 57598598 G A SNP TUBB1 ENST00000217133 human ensembl 69_37n +1 known missense c.220 p.D74N 1.000 pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Epsilon_tubulin pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin - no_errors TUBB1 HGNC ENSG00000101162 63 0 0.00 445 88 16.51 - - - TYW3 0 genome.wustl.edu 37 1 75198992 75198992 + Missense_Mutation SNP C C T TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 1 75198992 75198992 C T SNP TYW3 ENST00000370867 human ensembl 69_37n +1 known missense c.64 p.R22W 1.000 pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising - no_errors TYW3 HGNC ENSG00000162623 49 0 0.00 15 49 76.56 - - - ZNF512 0 genome.wustl.edu 37 2 27822524 27822524 + Nonsense_Mutation SNP C C T TCGA-EW-A2FW-01A-11D-A17D-09 TCGA-EW-A2FW-10A-01D-A17D-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx b8b57c49-55b8-49e7-872f-c17f61f91560 a6331793-635f-4ef4-9dd6-38762efed301 2 27822524 27822524 C T SNP ZNF512 ENST00000355467 human ensembl 69_37n +1 known nonsense c.352 p.Q118* 1.000 NULL smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF512 HGNC ENSG00000243943 62 0 0.00 69 10 12.66 - - -