Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All BMPR2 0 genome.wustl.edu 37 2 203420014 203420014 + Silent SNP T T C TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 2 203420014 203420014 T C SNP BMPR2 ENST00000374580 human ensembl 69_37n +1 known silent c.1626 p.P542 0.998 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Activin_rcpt,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom - no_errors BMPR2 HGNC ENSG00000204217 58 0 0.00 28 7 20.00 - - - BRD7 0 genome.wustl.edu 37 16 50388767 50388767 + Missense_Mutation SNP C C A TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 16 50388767 50388767 C A SNP BRD7 ENST00000394689 human ensembl 69_37n -1 known missense c.325 p.A109S 0.012 NULL pfam_DUF3512,pfam_Bromodomain,superfamily_Bromodomain,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain - no_errors BRD7 HGNC ENSG00000166164 91 0 0.00 98 27 21.60 - - - CDC6 0 genome.wustl.edu 37 17 38450651 38450651 + Silent SNP C C T TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 17 38450651 38450651 C T SNP CDC6 ENST00000209728 human ensembl 69_37n +1 known silent c.979 p.L327 1.000 pfam_ATPase_AAA_core,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6 pfam_ATPase_AAA_core,pfam_Cdc6_C_dom,smart_AAA+_ATPase,pirsf_Cell_div_Cdc6 - no_errors CDC6 HGNC ENSG00000094804 71 0 0.00 91 13 12.50 - - - CYLC2 0 genome.wustl.edu 37 9 105767473 105767473 + Missense_Mutation SNP A A C TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 9 105767473 105767473 A C SNP CYLC2 ENST00000374798 human ensembl 69_37n +1 putative missense c.560 p.K187T 0.431 NULL NULL - no_errors CYLC2 HGNC ENSG00000155833 120 0 0.00 58 20 25.64 - - - DNAH17 0 genome.wustl.edu 37 17 76522783 76522783 + Missense_Mutation SNP C C T TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 17 76522783 76522783 C T SNP DNAH17 ENST00000389840 human ensembl 69_37n -1 known missense c.3661 p.E1221K 0.169 NULL pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,superfamily_HR1_rho-bd - no_errors DNAH17 HGNC ENSG00000187775 32 0 0.00 38 14 26.92 - - - DOCK11 0 genome.wustl.edu 37 X 117777490 117777490 + Missense_Mutation SNP T T C TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 X 117777490 117777490 T C SNP DOCK11 ENST00000276202 human ensembl 69_37n +1 known missense c.4331 p.L1444P 1.000 NULL pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology - no_errors DOCK11 HGNC ENSG00000147251 81 0 0.00 72 30 29.41 - - - FAM218A 0 genome.wustl.edu 37 4 165878324 165878324 + Silent SNP C C T TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 4 165878324 165878324 C T SNP FAM218A ENST00000513876 human ensembl 69_37n +1 known silent c.150 p.T50 0.000 NULL NULL - no_errors FAM218A HGNC ENSG00000250486 26 0 0.00 36 6 14.29 - - - FAM86B1 0 genome.wustl.edu 37 8 12044217 12044217 + Nonsense_Mutation SNP G G C TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 8 12044217 12044217 G C SNP FAM86B1 ENST00000321602 human ensembl 69_37n -1 known nonsense c.50 p.S17* 0.804 NULL NULL - no_errors FAM86B1 HGNC ENSG00000186523 15 0 0.00 27 11 28.95 - - - FIGLA 0 genome.wustl.edu 37 2 71014794 71014794 + Missense_Mutation SNP G G T TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 2 71014794 71014794 G T SNP FIGLA ENST00000332372 human ensembl 69_37n -1 known missense c.371 p.A124D 0.573 superfamily_HLH_DNA-bd pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pfscan_HLH_DNA-bd - no_errors FIGLA HGNC ENSG00000183733 58 0 0.00 58 17 22.37 - - - FMN1 0 genome.wustl.edu 37 15 33359980 33359980 + Missense_Mutation SNP T T G TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 15 33359980 33359980 T G SNP FMN1 ENST00000334528 human ensembl 69_37n -1 known missense c.106 p.K36Q 1.000 NULL pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,prints_Formin - no_errors FMN1 HGNC ENSG00000248905 61 0 0.00 45 10 18.18 - - - HTR1A 0 genome.wustl.edu 37 5 63256637 63256637 + Missense_Mutation SNP G G A TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 5 63256637 63256637 G A SNP HTR1A ENST00000323865 human ensembl 69_37n -1 known missense c.910 p.H304Y 1.000 pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1A_rcpt,prints_7TM_GPCR_Rhodpsn,prints_5HT_rcpt,prints_NPY_rcpt - no_errors HTR1A HGNC ENSG00000178394 20 0 0.00 36 10 21.74 - - - KRTAP5-4 0 genome.wustl.edu 37 11 1643266 1643266 + Missense_Mutation SNP C C T TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 11 1643266 1643266 C T SNP KRTAP5-4 ENST00000399682 human ensembl 69_37n -1 known missense c.58 p.G20S 0.974 NULL NULL - no_errors KRTAP5-4 HGNC ENSG00000241598 51 0 0.00 51 18 26.09 - - - MAP3K5 0 genome.wustl.edu 37 6 136904772 136904773 + Frame_Shift_Del DEL GA GA - TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 GA GA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 6 136904772 136904773 GA - DEL MAP3K5 ENST00000359015 human ensembl 69_37n -1 known frame_shift_del c.3332_3331 p.S1111fs 1.000:1.000 NULL pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_SAM/pointed,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom - no_errors MAP3K5 HGNC ENSG00000197442 135 0 0.00 126 36 21.43 - - - PHACTR1 0 genome.wustl.edu 37 6 13273143 13273143 + Silent SNP G G A TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 6 13273143 13273143 G A SNP PHACTR1 ENST00000379350 human ensembl 69_37n +1 known silent c.1443 p.L481 1.000 pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat - no_errors PHACTR1 HGNC ENSG00000112137 89 0 0.00 81 21 20.59 - - - PTPRVP 0 genome.wustl.edu 37 1 202139101 202139101 + RNA SNP C C G TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 1 202139101 202139101 C G SNP PTPRVP ENST00000482597 human ensembl 69_37n +1 known rna NULL NULL 0.002 - - - no_errors PTPRVP HGNC ENSG00000243323 8 0 0.00 1 4 80.00 - - - PUS10 0 genome.wustl.edu 37 2 61233764 61233764 + Silent SNP A A C TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 2 61233764 61233764 A C SNP PUS10 ENST00000316752 human ensembl 69_37n -1 known silent c.396 p.V132 1.000 NULL superfamily_PsdUridine_synth_cat_dom - no_errors PUS10 HGNC ENSG00000162927 41 0 0.00 42 9 17.65 - - - R3HDM2 0 genome.wustl.edu 37 12 57696988 57696988 + Missense_Mutation SNP T T C TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 12 57696988 57696988 T C SNP R3HDM2 ENST00000347140 human ensembl 69_37n -1 known missense c.178 p.N60D 1.000 NULL pfam_R3H_ss-bd,smart_R3H_ss-bd,pfscan_R3H_ss-bd - no_errors R3HDM2 HGNC ENSG00000179912 52 0 0.00 49 39 44.32 - - - RBBP4 0 genome.wustl.edu 37 1 33117549 33117549 + Silent SNP C C A TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 1 33117549 33117549 C A SNP RBBP4 ENST00000373493 human ensembl 69_37n +1 known silent c.51 p.I17 1.000 NULL pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep - no_errors RBBP4 HGNC ENSG00000162521 33 0 0.00 47 11 18.97 - - - RP2 0 genome.wustl.edu 37 X 46736940 46736940 + Missense_Mutation SNP G G A TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 X 46736940 46736940 G A SNP RP2 ENST00000218340 human ensembl 69_37n +1 known missense c.884 p.G295D 1.000 superfamily_Nucleoside_diP_kinase,pirsf_Protein_XRP2 pfam_Tubulin-bd_cofactor_C,superfamily_Nucleoside_diP_kinase,superfamily_Adenylate_cyclase-assoc_CAP_C,smart_CARP_motif,pirsf_Protein_XRP2 - no_errors RP2 HGNC ENSG00000102218 326 0 0.00 303 47 13.43 - - - SLC4A1 0 genome.wustl.edu 37 17 42333063 42333063 + Missense_Mutation SNP T T C TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 17 42333063 42333063 T C SNP SLC4A1 ENST00000262418 human ensembl 69_37n -1 known missense c.1778 p.N593S 1.000 pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Anion_exchange,prints_Anion_exchange_1,tigrfam_HCO3_transpt_euk - no_errors SLC4A1 HGNC ENSG00000004939 67 0 0.00 63 27 30.00 - - - SYNE1 0 genome.wustl.edu 37 6 152560688 152560688 + Missense_Mutation SNP C C G TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 6 152560688 152560688 C G SNP SYNE1 ENST00000265368 human ensembl 69_37n -1 known missense c.20047 p.E6683Q 1.000 superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1 pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH - no_errors SYNE1 HGNC ENSG00000131018 63 0 0.00 82 17 17.17 - - - TARM1 0 genome.wustl.edu 37 19 54578326 54578326 + Silent SNP C C T TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 19 54578326 54578326 C T SNP TARM1 ENST00000446034 human ensembl 69_37n -1 known silent c.135 p.S45 0.000 smart_Ig_sub smart_Ig_sub - no_errors TARM1 HGNC ENSG00000248385 16 0 0.00 17 11 39.29 - - - VAC14 0 genome.wustl.edu 37 16 70817042 70817042 + Missense_Mutation SNP C C T TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 16 70817042 70817042 C T SNP VAC14 ENST00000261776 human ensembl 69_37n -1 known missense c.705 p.M235I 1.000 superfamily_ARM-type_fold pfam_DUF3434,pfam_HEAT,superfamily_ARM-type_fold - no_errors VAC14 HGNC ENSG00000103043 41 0 0.00 54 23 29.87 - - - WDFY3 0 genome.wustl.edu 37 4 85742538 85742538 + Silent SNP A A G TCGA-GM-A2DK-01A-21D-A17W-09 TCGA-GM-A2DK-10C-01D-A17W-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 0913724a-e8a8-43ed-8ba4-bfef389d6d25 8819ac99-cca4-4a90-a754-f910e8cdbbd2 4 85742538 85742538 A G SNP WDFY3 ENST00000295888 human ensembl 69_37n -1 known silent c.1290 p.F430 0.997 NULL pfam_BEACH_dom,pfam_Znf_FYVE,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,superfamily_ConA-like_lec_gl,superfamily_Cyclin-like,superfamily_ARM-type_fold,smart_WD40_repeat,smart_Znf_FYVE,pfscan_BEACH_dom,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom - no_errors WDFY3 HGNC ENSG00000163625 45 0 0.00 32 16 33.33 - - -