Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All BICD2 0 genome.wustl.edu 37 9 95526977 95526977 + Missense_Mutation SNP G G T TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 9 95526977 95526977 G T SNP BICD2 ENST00000356884 human ensembl 69_37n -1 known missense c.50 p.A17E 1.000 NULL pfam_Bicaudal-D_microtubule-assoc - no_errors BICD2 HGNC ENSG00000185963 25 0 0.00 12 10 41.67 - - - CHEK2 0 genome.wustl.edu 37 22 29120886 29120886 + Missense_Mutation SNP C C T TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 22 29120886 29120886 C T SNP CHEK2 ENST00000448511 human ensembl 69_37n -1 known missense c.470 p.R157K 0.000 NULL superfamily_SMAD_FHA_domain - no_errors CHEK2 HGNC ENSG00000183765 27 0 0.00 27 4 12.90 - - - GALNT3 0 genome.wustl.edu 37 2 166621457 166621457 + Missense_Mutation SNP G G T TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 2 166621457 166621457 G T SNP GALNT3 ENST00000392701 human ensembl 69_37n -1 known missense c.625 p.L209I 1.000 pfam_Glyco_trans_2 pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin - no_errors GALNT3 HGNC ENSG00000115339 24 0 0.00 14 3 17.65 - - - GPER 0 genome.wustl.edu 37 7 1132016 1132016 + Missense_Mutation SNP G G C TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 7 1132016 1132016 G C SNP GPER ENST00000297469 human ensembl 69_37n +1 known missense c.652 p.E218Q 1.000 pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam - no_errors GPER HGNC ENSG00000164850 41 0 0.00 21 25 54.35 - - - IFI16 0 genome.wustl.edu 37 1 158984516 158984516 + Missense_Mutation SNP G G T TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 1 158984516 158984516 G T SNP IFI16 ENST00000295809 human ensembl 69_37n +1 known missense c.46 p.V16F 0.000 pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN pfam_HIN200/IF120x,pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN,pfscan_HIN200/IF120x - no_errors IFI16 HGNC ENSG00000163565 39 0 0.00 39 5 11.36 - - - MTSS1L 0 genome.wustl.edu 37 16 70698201 70698201 + Silent SNP C C A TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 16 70698201 70698201 C A SNP MTSS1L ENST00000338779 human ensembl 69_37n -1 known silent c.1623 p.G541 0.988 NULL pfam_IRSp53/MIM_homology_IMD - no_errors MTSS1L HGNC ENSG00000132613 45 0 0.00 32 21 38.89 - - - SF3A2 0 genome.wustl.edu 37 19 2245452 2245452 + Silent SNP C C A TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 19 2245452 2245452 C A SNP SF3A2 ENST00000221494 human ensembl 69_37n +1 known silent c.253 p.R85 0.986 smart_Znf_U1 smart_Znf_U1,pfscan_Znf_C2H2_matrin - no_errors SF3A2 HGNC ENSG00000104897 47 0 0.00 34 17 33.33 - - - SRCIN1 0 genome.wustl.edu 37 17 36701522 36701522 + RNA SNP G G T TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 17 36701522 36701522 G T SNP SRCIN1 ENST00000584491 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors SRCIN1 HGNC ENSG00000017373 35 0 0.00 38 7 15.56 - - - STAT4 0 genome.wustl.edu 37 2 192011485 192011485 + Splice_Site SNP T T A TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 2 192011485 192011485 T A SNP STAT4 ENST00000358470 human ensembl 69_37n -1 known splice_site c.129-2 e2-2 1.000 - - - no_errors STAT4 HGNC ENSG00000138378 41 0 0.00 45 5 10.00 - - - TRIM2 0 genome.wustl.edu 37 4 154191552 154191552 + Silent SNP C C A TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 4 154191552 154191552 C A SNP TRIM2 ENST00000338700 human ensembl 69_37n +1 known silent c.96 p.G32 1.000 NULL pfam_NHL_repeat,pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_NHL_repeat_subgr,pfscan_Znf_B-box,pfscan_Znf_RING - no_errors TRIM2 HGNC ENSG00000109654 49 0 0.00 38 13 25.49 - - - ULBP2 0 genome.wustl.edu 37 6 150263287 150263287 + Missense_Mutation SNP C C G TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 6 150263287 150263287 C G SNP ULBP2 ENST00000367351 human ensembl 69_37n +1 known missense c.79 p.R27G 0.000 NULL pfam_MHC_I_a_a1/a2,superfamily_MHC_I/II-like_Ag-recog - no_errors ULBP2 HGNC ENSG00000131015 150 1 0.65 131 36 21.56 - - - ZNF668 0 genome.wustl.edu 37 16 31075646 31075646 + Silent SNP C C A TCGA-LL-A440-01A-11D-A243-09 TCGA-LL-A440-10A-01D-A243-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx c033740f-b98c-453b-b290-6a1d7d81b72a 3ad6a505-3409-4b03-80fc-f69d88303bb9 16 31075646 31075646 C A SNP ZNF668 ENST00000426488 human ensembl 69_37n -1 known silent c.204 p.G68 0.047 NULL pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2 - no_errors ZNF668 HGNC ENSG00000167394 25 0 0.00 16 10 38.46 - - -