Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_Position End_Position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID chromosome_name_WU start_WU stop_WU reference_WU variant_WU type_WU gene_name_WU transcript_name_WU transcript_species_WU transcript_source_WU transcript_version_WU strand_WU transcript_status_WU trv_type_WU c_position_WU amino_acid_change_WU ucsc_cons_WU domain_WU all_domains_WU deletion_substructures_WU transcript_error_WU default_gene_name_WU gene_name_source_WU ensembl_gene_id normal_ref_reads normal_var_reads normal_vaf tumor_ref_reads tumors_var_reads tumor_vaf EVS_EA EVS_AA EVS_All ADCK2 0 genome.wustl.edu 37 7 140373767 140373767 + Nonsense_Mutation SNP C C T TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 7 140373767 140373767 C T SNP ADCK2 ENST00000072869 human ensembl 69_37n +1 known nonsense c.637 p.Q213* 1.000 NULL pfam_UbiB_dom,superfamily_Kinase-like_dom - no_errors ADCK2 HGNC ENSG00000133597 56 0 0.00 38 6 13.64 - - - ANKRD22 0 genome.wustl.edu 37 10 90583107 90583107 + Missense_Mutation SNP C C T TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 10 90583107 90583107 C T SNP ANKRD22 ENST00000371930 human ensembl 69_37n -1 known missense c.428 p.C143Y 0.995 pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt - no_errors ANKRD22 HGNC ENSG00000152766 47 0 0.00 37 5 11.90 - - - ARHGEF37 0 genome.wustl.edu 37 5 149008411 149008411 + Missense_Mutation SNP A A G TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 5 149008411 149008411 A G SNP ARHGEF37 ENST00000333677 human ensembl 69_37n +1 known missense c.1700 p.Y567C 0.554 superfamily_SH3_domain,smart_SH3_domain pfam_DH-domain,pfam_BAR_dom,pfam_SH3_2,pfam_SH3_domain,superfamily_DH-domain,superfamily_SH3_domain,smart_DH-domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,pfscan_DH-domain - no_errors ARHGEF37 HGNC ENSG00000183111 57 0 0.00 36 8 18.18 - - - CAPN13 0 genome.wustl.edu 37 2 30968593 30968593 + Missense_Mutation SNP G G A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 2 30968593 30968593 G A SNP CAPN13 ENST00000295055 human ensembl 69_37n -1 known missense c.1244 p.S415L 0.000 pfam_Calpain_domain_III,superfamily_Calpain_domain_III pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease - no_errors CAPN13 HGNC ENSG00000162949 54 0 0.00 54 7 11.48 - - - CDH1 0 genome.wustl.edu 37 16 68849436 68849436 + Nonsense_Mutation SNP A A T TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 16 68849436 68849436 A T SNP CDH1 ENST00000261769 human ensembl 69_37n +1 known nonsense c.1339 p.K447* 0.992 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin - no_errors CDH1 HGNC ENSG00000039068 102 0 0.00 62 16 20.51 - - - CDH24 0 genome.wustl.edu 37 14 23516833 23516833 + RNA SNP G G T TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 14 23516833 23516833 G T SNP CDH24 ENST00000485922 human ensembl 69_37n -1 known rna NULL NULL 0.250 - - - no_errors CDH24 HGNC ENSG00000139880 25 0 0.00 22 4 15.38 - - - DSE 0 genome.wustl.edu 37 6 116756765 116756765 + Silent SNP G G A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 6 116756765 116756765 G A SNP DSE ENST00000537543 human ensembl 69_37n +1 known silent c.1191 p.L397 1.000 NULL superfamily_Chondroitin_lyas - no_errors DSE HGNC ENSG00000111817 37 0 0.00 26 4 13.33 - - - ENSG00000267110 0 genome.wustl.edu 37 19 55669006 55669006 + RNA SNP G G A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 19 55669006 55669006 G A SNP ENSG00000267110 ENST00000587871 human ensembl 69_37n -1 known rna NULL NULL 0.000 - - - no_errors CTD-2587H24.4 Clone_based_vega_gene ENSG00000267110 54 0 0.00 58 17 22.67 - - - FAT4 0 genome.wustl.edu 37 4 126372852 126372852 + Missense_Mutation SNP A A G TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 4 126372852 126372852 A G SNP FAT4 ENST00000394329 human ensembl 69_37n +1 known missense c.10681 p.S3561G 0.728 pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin - no_errors FAT4 HGNC ENSG00000196159 90 0 0.00 64 12 15.79 - - - HOXB5 0 genome.wustl.edu 37 17 46669748 46669748 + Missense_Mutation SNP C C A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 17 46669748 46669748 C A SNP HOXB5 ENST00000239151 human ensembl 69_37n -1 known missense c.633 p.K211N 1.000 pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa,prints_Homeobox_antennapedia - no_errors HOXB5 HGNC ENSG00000120075 152 0 0.00 97 15 13.39 - - - MUC20 0 genome.wustl.edu 37 3 195453014 195453014 + Missense_Mutation SNP G G A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 3 195453014 195453014 G A SNP MUC20 ENST00000447234 human ensembl 69_37n +1 known missense c.1540 p.G514R 0.000 NULL NULL - no_errors MUC20 HGNC ENSG00000176945 37 0 0.00 19 7 25.93 - - - OGFR 0 genome.wustl.edu 37 20 61444665 61444665 + Silent SNP G G A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 20 61444665 61444665 G A SNP OGFR ENST00000290291 human ensembl 69_37n +1 known silent c.1698 p.P566 0.000 pfam_OGF_rcpt_rpt pfam_OGF_rcpt,pfam_OGF_rcpt_rpt - no_errors OGFR HGNC ENSG00000060491 19 0 0.00 17 9 34.62 - - - PDLIM2 0 genome.wustl.edu 37 8 22451688 22451688 + RNA SNP G G C TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 8 22451688 22451688 G C SNP PDLIM2 ENST00000443561 human ensembl 69_37n +1 known rna NULL NULL 0.000 - - - no_errors PDLIM2 HGNC ENSG00000120913 9 0 0.00 1 4 80.00 - - - PIK3CA 0 genome.wustl.edu 37 3 178921553 178921553 + Missense_Mutation SNP T T A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 3 178921553 178921553 T A SNP PIK3CA ENST00000263967 human ensembl 69_37n +1 known missense c.1035 p.N345K 1.000 superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom - no_errors PIK3CA HGNC ENSG00000121879 59 0 0.00 39 8 17.02 - - - RB1CC1 0 genome.wustl.edu 37 8 53568768 53568768 + Silent SNP A A G TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 8 53568768 53568768 A G SNP RB1CC1 ENST00000025008 human ensembl 69_37n -1 known silent c.3621 p.A1207 0.994 NULL pfam_Autophagy-rel_p11 - no_errors RB1CC1 HGNC ENSG00000023287 106 0 0.00 66 8 10.81 - - - RPL23A 0 genome.wustl.edu 37 17 27047044 27047044 + Silent SNP G G A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 17 27047044 27047044 G A SNP RPL23A ENST00000422514 human ensembl 69_37n +1 known silent c.21 p.K7 1.000 NULL pfam_Ribosomal_L23/L25_N,pfam_Ribosomal_L25/23,superfamily_Ribosomal_L23/L15e_core_dom,tigrfam_Ribosomal_L23 - no_errors RPL23A HGNC ENSG00000198242 47 0 0.00 39 11 22.00 - - - SACS 0 genome.wustl.edu 37 13 23914806 23914806 + Missense_Mutation SNP C C T TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 13 23914806 23914806 C T SNP SACS ENST00000382292 human ensembl 69_37n -1 known missense c.3209 p.G1070E 0.977 NULL pfam_HEPN,pfam_Ubiquitin,superfamily_ATPase-like_ATP-bd,superfamily_DnaJ_N,smart_HEPN,pfscan_HEPN,pfscan_DnaJ_N,pfscan_Ubiquitin_supergroup - no_errors SACS HGNC ENSG00000151835 72 0 0.00 33 9 21.43 - - - SRC 0 genome.wustl.edu 37 20 36033505 36033505 + RNA SNP C C T TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 20 36033505 36033505 C T SNP SRC ENST00000477066 human ensembl 69_37n +1 known rna NULL NULL 0.001 - - - no_errors SRC HGNC ENSG00000197122 53 0 0.00 53 6 10.17 - - - WSCD2 0 genome.wustl.edu 37 12 108604028 108604028 + Missense_Mutation SNP G G A TCGA-MS-A51U-01A-31D-A25Q-09 TCGA-MS-A51U-10A-01D-A25Q-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx 875e4406-438d-4fbd-b9c1-38fb81d05ef9 f67e6bbe-66ee-43e3-ad4e-86416ce2cf15 12 108604028 108604028 G A SNP WSCD2 ENST00000261400 human ensembl 69_37n +1 known missense c.628 p.A210T 0.983 smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd pfam_WSC_carb-bd,smart_WSC_carb-bd_subgr,pfscan_WSC_carb-bd - no_errors WSCD2 HGNC ENSG00000075035 29 0 0.00 22 6 21.43 - - -