Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	default_gene_name	gene_name_source
ABCC5	10057	genome.wustl.edu	37	3	183669264	183669264	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	3	183669264	183669264	C	A	SNP	ABCC5	ENST00000334444	human	ensembl	70_37	-1	known	missense	c.2909	p.R970M	1.000	pfam_ABC_transptr_TM_dom,superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter_type1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC5	HGNC
ADAMTS18	170692	genome.wustl.edu	37	16	77331190	77331190	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	16	77331190	77331190	C	A	SNP	ADAMTS18	ENST00000282849	human	ensembl	70_37	-1	known	missense	c.2797	p.A933S	1.000	superfamily_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS18	HGNC
ADAMTS2	9509	genome.wustl.edu	37	5	178559250	178559250	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	5	178559250	178559250	G	A	SNP	ADAMTS2	ENST00000251582	human	ensembl	70_37	-1	known	silent	c.2271	p.D757	0.377	pfam_ADAM_spacer1	pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Pept_M12B_ADAM-TS2,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS2	HGNC
AFAP1	60312	genome.wustl.edu	37	4	7873707	7873707	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	7873707	7873707	G	T	SNP	AFAP1	ENST00000420658	human	ensembl	70_37	-1	known	missense	c.99	p.N33K	1.000	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	AFAP1	HGNC
ATAD2	29028	genome.wustl.edu	37	8	124382158	124382159	+	In_Frame_Ins	INS	-	-	TCA			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	8	124382158	124382159	-	TCA	INS	ATAD2	ENST00000287394	human	ensembl	70_37	-1	known	in_frame_ins	c.834_833	p.278in_frame_insD	0.866:0.899	NULL	pfam_ATPase_AAA_core,pfam_Bromodomain,superfamily_Bromodomain,smart_AAA+_ATPase,smart_Bromodomain,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	ATAD2	HGNC
ATP8A1	10396	genome.wustl.edu	37	4	42554617	42554617	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	42554617	42554617	G	T	SNP	ATP8A1	ENST00000381668	human	ensembl	70_37	-1	known	missense	c.1424	p.P475H	1.000	superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl	pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP8A1	HGNC
B3GALT5	10317	genome.wustl.edu	37	21	41032526	41032526	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	21	41032526	41032526	C	A	SNP	B3GALT5	ENST00000343118	human	ensembl	70_37	+1	known	missense	c.40	p.L14M	0.000	NULL	pfam_Glyco_trans_31	-	no_errors	B3GALT5	HGNC
BCR	613	genome.wustl.edu	37	22	23658000	23658000	+	RNA	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	22	23658000	23658000	G	A	SNP	BCR	ENST00000436990	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	BCR	HGNC
C3	718	genome.wustl.edu	37	19	6696657	6696657	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	19	6696657	6696657	C	A	SNP	C3	ENST00000245907	human	ensembl	70_37	-1	known	missense	c.2810	p.R937I	0.000	NULL	pfam_A2M_comp,pfam_A-macroglobulin_rcpt-bd,pfam_Macroglobln_a2,pfam_Netrin_module_non-TIMP,pfam_A2M_N_2,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Anaphylatoxin/fibulin,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_TIMP-like_OB-fold,superfamily_A-macroglobulin_rcpt-bd,superfamily_Anaphylatoxin_,smart_Anaphylatoxin/fibulin,smart_Netrin_module_non-TIMP,pfscan_Anaphylatoxin/fibulin,pfscan_Netrin_domain,prints_Anaphylatoxn	-	no_errors	C3	HGNC
CACNA1C	775	genome.wustl.edu	37	12	2794937	2794937	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	12	2794937	2794937	C	T	SNP	CACNA1C	ENST00000399634	human	ensembl	70_37	+1	known	missense	c.5822	p.T1941M	0.939	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC
CCNB3	85417	genome.wustl.edu	37	X	50051745	50051745	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	X	50051745	50051745	G	A	SNP	CCNB3	ENST00000276014	human	ensembl	70_37	+1	known	silent	c.576	p.K192	0.002	NULL	pfam_Cyclin_N,pfam_Cyclin_C,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNB3	HGNC
CELSR3	1951	genome.wustl.edu	37	3	48697842	48697842	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	3	48697842	48697842	G	A	SNP	CELSR3	ENST00000544264	human	ensembl	70_37	-1	known	silent	c.2226	p.V742	0.995	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_GPCR_2_secretin-like,pfam_Laminin_G,pfam_DUF3497,pfam_EG-like_dom,pfam_EGF_laminin,superfamily_ConA-like_lec_gl_sf,superfamily_Cadherin-like,smart_Cadherin,smart_EG-like_dom,smart_EGF-like_Ca-bd,smart_Laminin_G,smart_EGF_laminin,smart_GPCR_2_extracellular_dom,smart_GPS_dom,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_GPS_dom,pfscan_Laminin_G,pfscan_Cadherin,pfscan_GPCR_2_extracellular_dom,pfscan_GPCR_2-like,prints_Cadherin,prints_GPCR_2_secretin-like	-	no_errors	CELSR3	HGNC
CEP57	9702	genome.wustl.edu	37	11	95532468	95532468	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	11	95532468	95532468	C	A	SNP	CEP57	ENST00000325542	human	ensembl	70_37	+1	known	missense	c.118	p.P40T	1.000	NULL	pfam_Cep57_MT-bd_dom	-	no_errors	CEP57	HGNC
CHD1L	9557	genome.wustl.edu	37	1	146767152	146767152	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	146767152	146767152	C	T	SNP	CHD1L	ENST00000369258	human	ensembl	70_37	+1	known	nonsense	c.2656	p.Q886*	0.379	pfscan_A1pp	pfam_SNF2_N,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_A1pp,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	CHD1L	HGNC
COL12A1	1303	genome.wustl.edu	37	6	75816178	75816178	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	6	75816178	75816178	G	A	SNP	COL12A1	ENST00000322507	human	ensembl	70_37	-1	known	missense	c.8135	p.P2712L	0.972	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Fibronectin_type3,pfam_VWF_A,pfam_Collagen,superfamily_ConA-like_lec_gl_sf,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL12A1	HGNC
COL17A1	1308	genome.wustl.edu	37	10	105797434	105797434	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	105797434	105797434	G	T	SNP	COL17A1	ENST00000353479	human	ensembl	70_37	-1	known	missense	c.3168	p.D1056E	0.996	NULL	pfam_Collagen	-	no_errors	COL17A1	HGNC
COL18A1	80781	genome.wustl.edu	37	21	46888226	46888226	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	21	46888226	46888226	G	A	SNP	COL18A1	ENST00000359759	human	ensembl	70_37	+1	known	silent	c.1422	p.T474	0.000	superfamily_ConA-like_lec_gl_sf,smart_Laminin_G	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl_sf,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC
COL6A5	256076	genome.wustl.edu	37	3	130095513	130095513	+	Silent	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	3	130095513	130095513	G	T	SNP	COL6A5	ENST00000265379	human	ensembl	70_37	+1	known	silent	c.501	p.V167	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC
CR2	1380	genome.wustl.edu	37	1	207642171	207642171	+	Frame_Shift_Del	DEL	T	T	-			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	207642171	207642171	T	-	DEL	CR2	ENST00000367057	human	ensembl	70_37	+1	known	frame_shift_del	c.661	p.N223fs	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CR2	HGNC
CTNNA2	1496	genome.wustl.edu	37	2	80816449	80816449	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	2	80816449	80816449	G	A	SNP	CTNNA2	ENST00000361291	human	ensembl	70_37	+1	known	silent	c.2130	p.P710	0.133	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA2	HGNC
CTNNA3	29119	genome.wustl.edu	37	10	68940115	68940115	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	68940115	68940115	C	T	SNP	CTNNA3	ENST00000373744	human	ensembl	70_37	-1	known	missense	c.1007	p.R336H	1.000	pfam_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA3	HGNC
DACH2	117154	genome.wustl.edu	37	X	85997720	85997720	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	X	85997720	85997720	G	T	SNP	DACH2	ENST00000461604	human	ensembl	70_37	+1	known	missense	c.1315	p.D439Y	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	DACH2	HGNC
DMXL1	1657	genome.wustl.edu	37	5	118483070	118483070	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	5	118483070	118483070	G	T	SNP	DMXL1	ENST00000539542	human	ensembl	70_37	+1	known	missense	c.2816	p.S939I	1.000	superfamily_WD40_repeat_dom	pfam_Rav1p_C,pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DMXL1	HGNC
DNAH9	1770	genome.wustl.edu	37	17	11835466	11835466	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	17	11835466	11835466	G	T	SNP	DNAH9	ENST00000262442	human	ensembl	70_37	+1	known	nonsense	c.12241	p.G4081*	1.000	pfam_Dynein_heavy_dom	pfam_Dynein_heavy_dom,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC
DOT1L	84444	genome.wustl.edu	37	19	2217769	2217769	+	Splice_Site	SNP	A	A	G			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	19	2217769	2217769	A	G	SNP	DOT1L	ENST00000398665	human	ensembl	70_37	+1	known	splice_site	c.2545-2	e22-2	1.000	-	-	-	no_errors	DOT1L	HGNC
DPP10	57628	genome.wustl.edu	37	2	116101413	116101413	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	2	116101413	116101413	G	T	SNP	DPP10	ENST00000393147	human	ensembl	70_37	+1	known	nonsense	c.208	p.E70*	1.000	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	DPP10	HGNC
ENSG00000252430	0	genome.wustl.edu	37	X	98640203	98640203	+	RNA	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	X	98640203	98640203	G	T	SNP	ENSG00000252430	ENST00000516621	human	ensembl	70_37	-1	novel	rna	NULL	NULL	0.007	-	-	-	no_errors	AL109750.1	Clone_based_ensembl_gene
ENSG00000264558	0	genome.wustl.edu	37	17	45759980	45759980	+	RNA	SNP	C	C	G			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	17	45759980	45759980	C	G	SNP	ENSG00000264558	ENST00000578482	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	RP11-138C9.1	Clone_based_vega_gene
EPC1	80314	genome.wustl.edu	37	10	32667508	32667508	+	RNA	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	32667508	32667508	C	A	SNP	EPC1	ENST00000462470	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EPC1	HGNC
FAM124B	79843	genome.wustl.edu	37	2	225244417	225244417	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	2	225244417	225244417	C	A	SNP	FAM124B	ENST00000409685	human	ensembl	70_37	-1	known	missense	c.1241	p.R414I	0.769	NULL	NULL	-	no_errors	FAM124B	HGNC
FEZ1	9638	genome.wustl.edu	37	11	125351442	125351442	+	Nonsense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	11	125351442	125351442	G	T	SNP	FEZ1	ENST00000278919	human	ensembl	70_37	-1	known	nonsense	c.399	p.C133*	1.000	pfam_FEZ	pfam_FEZ	-	no_errors	FEZ1	HGNC
FH	2271	genome.wustl.edu	37	1	241680522	241680522	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	241680522	241680522	G	A	SNP	FH	ENST00000366560	human	ensembl	70_37	-1	known	missense	c.227	p.T76M	1.000	pfam_Lyase1_N,superfamily_L-Aspartase-like,tigrfam_Fum_hydII	pfam_Lyase1_N,pfam_Fumarase_C_C,superfamily_L-Aspartase-like,prints_Fumarate_lyase,tigrfam_Fum_hydII	-	no_errors	FH	HGNC
FLNC	2318	genome.wustl.edu	37	7	128480702	128480702	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	7	128480702	128480702	G	A	SNP	FLNC	ENST00000325888	human	ensembl	70_37	+1	known	silent	c.1650	p.T550	0.001	pfam_Filamin/ABP280_repeat-like,superfamily_Ig_E-set,smart_Filamin,pfscan_Filamin/ABP280_repeat-like	pfam_Filamin/ABP280_repeat-like,pfam_CH-domain,superfamily_CH-domain,superfamily_Ig_E-set,smart_CH-domain,smart_Filamin,pfscan_CH-domain,pfscan_Filamin/ABP280_repeat-like	-	no_errors	FLNC	HGNC
FOXG1	2290	genome.wustl.edu	37	14	29236510	29236510	+	Missense_Mutation	SNP	G	G	C			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	14	29236510	29236510	G	C	SNP	FOXG1	ENST00000313071	human	ensembl	70_37	+1	known	missense	c.25	p.E9Q	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXG1	HGNC
GAN	8139	genome.wustl.edu	37	16	81411053	81411053	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	16	81411053	81411053	G	T	SNP	GAN	ENST00000248272	human	ensembl	70_37	+1	known	missense	c.1646	p.R549I	0.999	smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	GAN	HGNC
GAPVD1	26130	genome.wustl.edu	37	9	128064910	128064910	+	Missense_Mutation	SNP	T	T	G			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	9	128064910	128064910	T	G	SNP	GAPVD1	ENST00000394105	human	ensembl	70_37	+1	known	missense	c.834	p.H278Q	0.999	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,pfscan_RasGAP	pfam_RasGAP,pfam_VPS9,superfamily_Rho_GTPase_activation_prot,smart_VPS9_subgr,pfscan_VPS9,pfscan_RasGAP	-	no_errors	GAPVD1	HGNC
GIMAP1	170575	genome.wustl.edu	37	7	150417617	150417617	+	Silent	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	7	150417617	150417617	C	T	SNP	GIMAP1	ENST00000307194	human	ensembl	70_37	+1	known	silent	c.525	p.R175	0.000	pfam_AIG1	pfam_AIG1	-	no_errors	GIMAP1	HGNC
GLIS1	148979	genome.wustl.edu	37	1	53980322	53980322	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	53980322	53980322	G	T	SNP	GLIS1	ENST00000312233	human	ensembl	70_37	-1	known	missense	c.1334	p.P445H	0.974	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLIS1	HGNC
GLRA3	8001	genome.wustl.edu	37	4	175598419	175598419	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	175598419	175598419	C	T	SNP	GLRA3	ENST00000274093	human	ensembl	70_37	-1	known	missense	c.737	p.R246Q	0.998	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABAA_rcpt,prints_Glycine_rcpt_A3,prints_Glycine_rcpt_A,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GLRA3	HGNC
GOLGA2P5	55592	genome.wustl.edu	37	12	100562920	100562921	+	RNA	INS	-	-	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	12	100562920	100562921	-	T	INS	GOLGA2P5	ENST00000421840	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	GOLGA2B	Clone_based_vega_gene
GOLGA3	2802	genome.wustl.edu	37	12	133372557	133372557	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	12	133372557	133372557	C	T	SNP	GOLGA3	ENST00000204726	human	ensembl	70_37	-1	known	missense	c.2350	p.A784T	1.000	NULL	superfamily_Prefoldin	-	no_errors	GOLGA3	HGNC
GOLGA4	2803	genome.wustl.edu	37	3	37337603	37337603	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	3	37337603	37337603	G	T	SNP	GOLGA4	ENST00000361924	human	ensembl	70_37	+1	known	missense	c.707	p.R236L	0.999	superfamily_Prefoldin	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC
GOLGA6L2	283685	genome.wustl.edu	37	15	23685343	23685343	+	Missense_Mutation	SNP	T	T	C			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	15	23685343	23685343	T	C	SNP	GOLGA6L2	ENST00000567107	human	ensembl	70_37	-1	putative	missense	c.2279	p.E760G	0.000	NULL	NULL	-	no_errors	GOLGA6L2	HGNC
GOLGA6L2	283685	genome.wustl.edu	37	15	23685943	23685943	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	15	23685943	23685943	C	T	SNP	GOLGA6L2	ENST00000567107	human	ensembl	70_37	-1	putative	missense	c.1679	p.G560E	0.000	NULL	NULL	-	no_errors	GOLGA6L2	HGNC
GRXCR1	389207	genome.wustl.edu	37	4	42895397	42895397	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	42895397	42895397	G	A	SNP	GRXCR1	ENST00000399770	human	ensembl	70_37	+1	known	silent	c.114	p.P38	0.000	NULL	pfam_Glutaredoxin,superfamily_Thioredoxin-like_fold,superfamily_HSP_DnaJ_Cys-rich_dom	-	no_errors	GRXCR1	HGNC
HCN4	10021	genome.wustl.edu	37	15	73659973	73659973	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	15	73659973	73659973	G	A	SNP	HCN4	ENST00000261917	human	ensembl	70_37	-1	known	silent	c.639	p.F213	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,pfscan_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG	-	no_errors	HCN4	HGNC
HEXB	3074	genome.wustl.edu	37	5	74011394	74011394	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	5	74011394	74011394	C	T	SNP	HEXB	ENST00000261416	human	ensembl	70_37	+1	known	missense	c.961	p.P321S	1.000	pfam_Glyco_hydro_20_cat-core,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_20_cat-core,pfam_Glyco_hydro_20b,superfamily_Glycoside_hydrolase_SF,prints_Beta_hexosaminidase_sua/sub	-	no_errors	HEXB	HGNC
HMHA1	23526	genome.wustl.edu	37	19	1073273	1073273	+	Missense_Mutation	SNP	C	C	G			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	19	1073273	1073273	C	G	SNP	HMHA1	ENST00000313093	human	ensembl	70_37	+1	known	missense	c.547	p.L183V	1.000	NULL	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_FCH,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom	-	no_errors	HMHA1	HGNC
HSPB7	27129	genome.wustl.edu	37	1	16342139	16342139	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	16342139	16342139	C	T	SNP	HSPB7	ENST00000487046	human	ensembl	70_37	-1	known	missense	c.464	p.R155Q	0.994	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	pfam_a-crystallin/Hsp20_dom,superfamily_HSP20-like_chaperone,pfscan_a-crystallin/Hsp20_dom,prints_Alpha-crystallin/HSP	-	no_errors	HSPB7	HGNC
IFLTD1	160492	genome.wustl.edu	37	12	25679784	25679784	+	Silent	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	12	25679784	25679784	G	T	SNP	IFLTD1	ENST00000458174	human	ensembl	70_37	-1	known	silent	c.597	p.L199	0.986	pfam_Lamin_tail_dom	pfam_Lamin_tail_dom	-	no_errors	IFLTD1	HGNC
IGFL3	388555	genome.wustl.edu	37	19	46627378	46627378	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	19	46627378	46627378	G	A	SNP	IGFL3	ENST00000341415	human	ensembl	70_37	-1	known	missense	c.115	p.P39S	0.231	NULL	NULL	-	no_errors	IGFL3	HGNC
IL12RB2	3595	genome.wustl.edu	37	1	67787470	67787470	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	67787470	67787470	C	A	SNP	IL12RB2	ENST00000262345	human	ensembl	70_37	+1	known	missense	c.262	p.Q88K	0.665	pfam_IgC2-like_lig-bd	pfam_Fibronectin_type3,pfam_IgC2-like_lig-bd,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	IL12RB2	HGNC
IL7	3574	genome.wustl.edu	37	8	79648739	79648739	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	8	79648739	79648739	G	A	SNP	IL7	ENST00000263851	human	ensembl	70_37	-1	known	silent	c.384	p.A128	0.001	pfam_Interleukin_7_9,smart_Interleukin-7,pirsf_Interleukin-7	pfam_Interleukin_7_9,smart_Interleukin-7,pirsf_Interleukin-7,prints_Interleukin-7	-	no_errors	IL7	HGNC
KCNA3	3738	genome.wustl.edu	37	1	111217029	111217029	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	111217029	111217029	G	A	SNP	KCNA3	ENST00000369769	human	ensembl	70_37	-1	known	missense	c.403	p.R135W	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv1.3,prints_K_chnl_volt-dep_Kv1,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNA3	HGNC
KCNC3	3748	genome.wustl.edu	37	19	50832047	50832047	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	19	50832047	50832047	C	T	SNP	KCNC3	ENST00000477616	human	ensembl	70_37	-1	known	missense	c.293	p.R98H	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,pfam_K_chnl_volt-dep_Kv3_ID,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv3.3,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv	-	no_errors	KCNC3	HGNC
KCNS3	3790	genome.wustl.edu	37	2	18112978	18112978	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	2	18112978	18112978	G	A	SNP	KCNS3	ENST00000304101	human	ensembl	70_37	+1	known	missense	c.703	p.G235R	0.043	pfam_Ion_trans_dom,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv2	-	no_errors	KCNS3	HGNC
KIAA1279	26128	genome.wustl.edu	37	10	70775886	70775886	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	70775886	70775886	C	T	SNP	KIAA1279	ENST00000361983	human	ensembl	70_37	+1	known	missense	c.1580	p.P527L	1.000	pfam_KBP	pfam_KBP	-	no_errors	KIAA1279	HGNC
KLC4	89953	genome.wustl.edu	37	6	43040984	43040984	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	6	43040984	43040984	G	T	SNP	KLC4	ENST00000259708	human	ensembl	70_37	+1	known	missense	c.1707	p.R569S	1.000	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Kinesin_light	-	no_errors	KLC4	HGNC
KLHL1	57626	genome.wustl.edu	37	13	70281894	70281894	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	13	70281894	70281894	C	A	SNP	KLHL1	ENST00000377844	human	ensembl	70_37	-1	known	missense	c.2050	p.A684S	1.000	pfam_Kelch_1,smart_Kelch_1	pfam_Kelch_1,pfam_Kelch_2,pfam_BACK,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL1	HGNC
L3MBTL2	83746	genome.wustl.edu	37	22	41621884	41621884	+	Silent	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	22	41621884	41621884	C	T	SNP	L3MBTL2	ENST00000216237	human	ensembl	70_37	+1	known	silent	c.1443	p.S481	0.998	pfam_Mbt,smart_Mbt,pfscan_Mbt	pfam_Mbt,smart_Mbt,pfscan_Mbt,pfscan_Znf_FCS	-	no_errors	L3MBTL2	HGNC
LOC440570	440570	genome.wustl.edu	37	1	17198146	17198147	+	RNA	DEL	AC	AC	-			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	AC	AC					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	17198146	17198147	AC	-	DEL	LOC440570	ENST00000438002	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.006:0.006	-	-	-	no_errors	RP11-108M9.3	Clone_based_vega_gene
LRIT2	340745	genome.wustl.edu	37	10	85985198	85985198	+	Nonsense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	85985198	85985198	C	A	SNP	LRIT2	ENST00000538192	human	ensembl	70_37	-1	known	nonsense	c.79	p.G27*	0.601	NULL	pfam_Ig_I-set,pfam_Leu-rich_rpt,superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIT2	HGNC
MAEL	84944	genome.wustl.edu	37	1	166959175	166959175	+	RNA	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	166959175	166959175	G	A	SNP	MAEL	ENST00000491055	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MAEL	HGNC
MAN1B1	11253	genome.wustl.edu	37	9	139994205	139994205	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	9	139994205	139994205	G	A	SNP	MAN1B1	ENST00000371589	human	ensembl	70_37	+1	known	missense	c.788	p.G263E	0.997	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	MAN1B1	HGNC
MAP3K1	4214	genome.wustl.edu	37	5	56174810	56174810	+	Missense_Mutation	SNP	A	A	G			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	5	56174810	56174810	A	G	SNP	MAP3K1	ENST00000399503	human	ensembl	70_37	+1	novel	missense	c.1969	p.T657A	1.000	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC
MIR29C	407026	genome.wustl.edu	37	1	207975270	207975270	+	RNA	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	207975270	207975270	G	T	SNP	MIR29C	ENST00000385231	human	ensembl	70_37	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR29C	HGNC
MLIP	90523	genome.wustl.edu	37	6	54002030	54002030	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	6	54002030	54002030	C	T	SNP	MLIP	ENST00000502396	human	ensembl	70_37	+1	putative	missense	c.1163	p.S388F	0.933	NULL	NULL	-	no_errors	MLIP	HGNC
MPDZ	8777	genome.wustl.edu	37	9	13193262	13193262	+	Silent	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	9	13193262	13193262	C	A	SNP	MPDZ	ENST00000319217	human	ensembl	70_37	-1	known	silent	c.1707	p.L569	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_PDZ,pfam_L27_2,superfamily_PDZ,smart_PDZ,pfscan_L27,pfscan_PDZ	-	no_errors	MPDZ	HGNC
MUC5B	727897	genome.wustl.edu	37	11	1265999	1265999	+	Missense_Mutation	SNP	T	T	C			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	11	1265999	1265999	T	C	SNP	MUC5B	ENST00000447027	human	ensembl	70_37	+1	known	missense	c.7898	p.L2633P	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC
MUM1L1	139221	genome.wustl.edu	37	X	105450199	105450199	+	Silent	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	X	105450199	105450199	C	T	SNP	MUM1L1	ENST00000337685	human	ensembl	70_37	+1	known	silent	c.774	p.S258	0.000	NULL	superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	MUM1L1	HGNC
MYH4	4622	genome.wustl.edu	37	17	10353794	10353794	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	17	10353794	10353794	C	T	SNP	MYH4	ENST00000255381	human	ensembl	70_37	-1	known	missense	c.4157	p.R1386H	1.000	pfam_Myosin_tail	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH4	HGNC
MYO16	23026	genome.wustl.edu	37	13	109831945	109831945	+	Silent	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	13	109831945	109831945	G	T	SNP	MYO16	ENST00000356711	human	ensembl	70_37	+1	known	silent	c.5313	p.S1771	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_Myosin_head_motor_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYO16	HGNC
MYO9B	4650	genome.wustl.edu	37	19	17323012	17323012	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	19	17323012	17323012	G	A	SNP	MYO9B	ENST00000594824	human	ensembl	70_37	+1	known	missense	c.6367	p.A2123T	0.000	NULL	pfam_Myosin_head_motor_dom,pfam_RhoGAP_dom,pfam_Ras-assoc,pfam_IQ_motif_EF-hand-BS,superfamily_Rho_GTPase_activation_prot,smart_Ras-assoc,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_RhoGAP_dom,pfscan_IQ_motif_EF-hand-BS,pfscan_Ras-assoc,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RhoGAP_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO9B	HGNC
MYSM1	114803	genome.wustl.edu	37	1	59158365	59158365	+	RNA	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	59158365	59158365	G	A	SNP	MYSM1	ENST00000489282	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MYSM1	HGNC
NFXL1	152518	genome.wustl.edu	37	4	47880600	47880600	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	47880600	47880600	G	T	SNP	NFXL1	ENST00000381538	human	ensembl	70_37	-1	known	missense	c.2021	p.T674K	0.810	NULL	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC
NKAIN2	154215	genome.wustl.edu	37	6	124604274	124604274	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	6	124604274	124604274	C	T	SNP	NKAIN2	ENST00000368417	human	ensembl	70_37	+1	known	missense	c.178	p.R60C	1.000	pfam_Na/K-Atpase_Interacting	pfam_Na/K-Atpase_Interacting	-	no_errors	NKAIN2	HGNC
PCNXL2	80003	genome.wustl.edu	37	1	233152734	233152734	+	Missense_Mutation	SNP	A	A	G			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	233152734	233152734	A	G	SNP	PCNXL2	ENST00000258229	human	ensembl	70_37	-1	known	missense	c.4772	p.I1591T	0.935	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	70_37	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC
PJA2	9867	genome.wustl.edu	37	5	108714347	108714347	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	5	108714347	108714347	G	T	SNP	PJA2	ENST00000361189	human	ensembl	70_37	-1	known	missense	c.841	p.H281N	0.645	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	PJA2	HGNC
PLCE1	51196	genome.wustl.edu	37	10	96081752	96081752	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	96081752	96081752	C	A	SNP	PLCE1	ENST00000371380	human	ensembl	70_37	+1	known	missense	c.6437	p.P2146Q	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_Ras-assoc,pfam_RasGRF_CDC25,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_Ras_GEF_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGRF_CDC25,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,smart_Ras-assoc,pfscan_C2_membr_targeting,pfscan_Ras-assoc,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,pfscan_RasGRF_CDC25,prints_Pinositol_PLipase_C	-	no_errors	PLCE1	HGNC
PNISR	25957	genome.wustl.edu	37	6	99857071	99857071	+	Silent	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	6	99857071	99857071	C	A	SNP	PNISR	ENST00000369239	human	ensembl	70_37	-1	known	silent	c.651	p.V217	1.000	NULL	NULL	-	no_errors	PNISR	HGNC
PNMA3	29944	genome.wustl.edu	37	X	152226470	152226470	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	X	152226470	152226470	C	T	SNP	PNMA3	ENST00000370264	human	ensembl	70_37	+1	known	missense	c.1058	p.A353V	0.000	NULL	superfamily_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	PNMA3	HGNC
POMC	5443	genome.wustl.edu	37	2	25384145	25384145	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	2	25384145	25384145	G	A	SNP	POMC	ENST00000264708	human	ensembl	70_37	-1	known	silent	c.609	p.A203	0.153	NULL	pfam_Mcrtin_ACTH_cent,pfam_Melanocortin_N,pfam_Opioid_neuropept,prints_Mcortin_ACTH	-	no_errors	POMC	HGNC
PRRC2C	23215	genome.wustl.edu	37	1	171504696	171504696	+	Missense_Mutation	SNP	A	A	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	171504696	171504696	A	T	SNP	PRRC2C	ENST00000392078	human	ensembl	70_37	+1	known	missense	c.2003	p.Q668L	1.000	NULL	pfam_BAT2_N	-	no_errors	PRRC2C	HGNC
PTCH1	5727	genome.wustl.edu	37	9	98209303	98209303	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	9	98209303	98209303	G	T	SNP	PTCH1	ENST00000331920	human	ensembl	70_37	-1	known	missense	c.4235	p.P1412H	1.000	NULL	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC
RAB33B	83452	genome.wustl.edu	37	4	140393933	140393933	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	140393933	140393933	G	A	SNP	RAB33B	ENST00000305626	human	ensembl	70_37	+1	known	missense	c.343	p.D115N	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_EF_GTP-bd_dom,pfam_SRP_receptor_beta_su,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB33B	HGNC
RABL5	64792	genome.wustl.edu	37	7	100959676	100959676	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	7	100959676	100959676	C	T	SNP	RABL5	ENST00000315322	human	ensembl	70_37	-1	known	missense	c.354	p.M118I	0.132	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,pfam_MIRO-like,pfam_SRP_receptor_beta_su	-	no_errors	RABL5	HGNC
RASAL3	64926	genome.wustl.edu	37	19	15575085	15575085	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	19	15575085	15575085	C	T	SNP	RASAL3	ENST00000343625	human	ensembl	70_37	-1	known	missense	c.85	p.G29S	0.000	NULL	pfam_RasGAP,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_RasGAP,pfscan_RasGAP	-	no_errors	RASAL3	HGNC
RNF213	57674	genome.wustl.edu	37	17	78360193	78360193	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	17	78360193	78360193	G	T	SNP	RNF213	ENST00000582970	human	ensembl	70_37	+1	known	missense	c.14683	p.V4895F	0.055	NULL	smart_AAA+_ATPase,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF213	HGNC
RNPC3	55599	genome.wustl.edu	37	1	104085920	104085920	+	Splice_Site	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	104085920	104085920	G	T	SNP	RNPC3	ENST00000524631	human	ensembl	70_37	+1	novel	splice_site	c.894-1	e9-1	0.715	-	-	-	no_errors	RNPC3	HGNC
RSG1	79363	genome.wustl.edu	37	1	16558560	16558560	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	16558560	16558560	C	T	SNP	RSG1	ENST00000375599	human	ensembl	70_37	-1	known	missense	c.760	p.E254K	0.140	NULL	pfam_MIRO-like,pfam_Small_GTPase,prints_Small_GTPase	-	no_errors	RSG1	HGNC
RSRC2	65117	genome.wustl.edu	37	12	122995725	122995725	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	12	122995725	122995725	C	A	SNP	RSRC2	ENST00000331738	human	ensembl	70_37	-1	known	missense	c.736	p.A246S	1.000	NULL	NULL	-	no_errors	RSRC2	HGNC
RYR2	6262	genome.wustl.edu	37	1	237729972	237729972	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	237729972	237729972	C	T	SNP	RYR2	ENST00000360064	human	ensembl	70_37	+1	known	missense	c.3314	p.T1105M	1.000	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl_sf,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR_motif,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR_motif,superfamily_ConA-like_lec_gl_sf,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC
SCARF1	8578	genome.wustl.edu	37	17	1538767	1538767	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	17	1538767	1538767	G	A	SNP	SCARF1	ENST00000263071	human	ensembl	70_37	-1	known	missense	c.1778	p.A593V	1.000	NULL	pfam_EGF_laminin,superfamily_Growth_fac_rcpt,smart_EG-like_dom,pfscan_EG-like_dom	-	no_errors	SCARF1	HGNC
SDCBP	6386	genome.wustl.edu	37	8	59484844	59484844	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	8	59484844	59484844	G	T	SNP	SDCBP	ENST00000260130	human	ensembl	70_37	+1	known	missense	c.211	p.A71S	0.888	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SDCBP	HGNC
SEC31B	25956	genome.wustl.edu	37	10	102247514	102247514	+	Silent	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	102247514	102247514	G	T	SNP	SEC31B	ENST00000370345	human	ensembl	70_37	-1	known	silent	c.3399	p.A1133	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31B	HGNC
SGIP1	84251	genome.wustl.edu	37	1	67109411	67109412	+	RNA	DEL	TG	TG	-			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	1	67109411	67109412	TG	-	DEL	SGIP1	ENST00000483060	human	ensembl	70_37	+1	known	rna	NULL	NULL	0.058:0.051	-	-	-	no_errors	SGIP1	HGNC
SGPL1	8879	genome.wustl.edu	37	10	72614556	72614556	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	72614556	72614556	C	A	SNP	SGPL1	ENST00000373202	human	ensembl	70_37	+1	known	missense	c.353	p.S118Y	0.354	superfamily_PyrdxlP-dep_Trfase_major_dom	pfam_PyrdxlP-dep_de-COase,pfam_Aminotrans_V/Cys_dSase,pfam_Aminotransferase_I/II,superfamily_PyrdxlP-dep_Trfase_major_dom	-	no_errors	SGPL1	HGNC
SHC2	25759	genome.wustl.edu	37	19	434715	434715	+	Silent	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	19	434715	434715	G	T	SNP	SHC2	ENST00000264554	human	ensembl	70_37	-1	known	silent	c.1104	p.L368	0.988	NULL	pfam_PTyr_interaction_dom,pfam_SH2,smart_PTyr_interaction_dom,smart_SH2,pfscan_PTyr_interaction_dom,pfscan_SH2,prints_PID_domain,prints_SH2	-	no_errors	SHC2	HGNC
SLC7A11	23657	genome.wustl.edu	37	4	139153538	139153539	+	Splice_Site	INS	-	-	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	139153538	139153539	-	A	INS	SLC7A11	ENST00000280612	human	ensembl	70_37	-1	known	splice_site_ins	c.405-3_405-2	e3-2	1.000:0.006	-	-	-	no_errors	SLC7A11	HGNC
SLK	9748	genome.wustl.edu	37	10	105763175	105763175	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	105763175	105763175	G	T	SNP	SLK	ENST00000369755	human	ensembl	70_37	+1	known	missense	c.2239	p.D747Y	1.000	superfamily_Kinase-like_dom	pfam_PKK,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_UVR_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SLK	HGNC
STAMBPL1	57559	genome.wustl.edu	37	10	90673020	90673020	+	Nonsense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	90673020	90673020	C	T	SNP	STAMBPL1	ENST00000371927	human	ensembl	70_37	+1	known	nonsense	c.583	p.R195*	0.765	NULL	pfam_JAB1_Mov34_MPN_PAD1,smart_JAB1_Mov34_MPN_PAD1	-	no_errors	STAMBPL1	HGNC
STX11	8676	genome.wustl.edu	37	6	144508077	144508077	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	6	144508077	144508077	C	T	SNP	STX11	ENST00000367568	human	ensembl	70_37	+1	known	missense	c.313	p.R105C	0.654	pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N	pfam_T_SNARE_dom,pfam_Syntaxin_N,superfamily_t-SNARE,smart_Syntaxin_N,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX11	HGNC
TAS2R60	338398	genome.wustl.edu	37	7	143141000	143141000	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	7	143141000	143141000	C	A	SNP	TAS2R60	ENST00000332690	human	ensembl	70_37	+1	known	missense	c.455	p.S152Y	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R60	HGNC
THBS4	7060	genome.wustl.edu	37	5	79372793	79372793	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	5	79372793	79372793	G	T	SNP	THBS4	ENST00000350881	human	ensembl	70_37	+1	known	missense	c.2008	p.D670Y	1.000	NULL	pfam_Thrombospondin_C,pfam_Thbs/COMP_coiled-coil,pfam_Thrombospondin_3-like_rpt,pfam_EGF-like_Ca-bd,superfamily_ConA-like_lec_gl_sf,smart_Laminin_G,smart_EG-like_dom,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	THBS4	HGNC
TIA1	7072	genome.wustl.edu	37	2	70456452	70456453	+	Splice_Site	INS	-	-	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	2	70456452	70456453	-	A	INS	TIA1	ENST00000433529	human	ensembl	70_37	-1	known	splice_site_ins	c.223-3_223-2	e4-2	1.000:0.990	-	-	-	no_errors	TIA1	HGNC
TOP3B	8940	genome.wustl.edu	37	22	22324757	22324757	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	22	22324757	22324757	C	T	SNP	TOP3B	ENST00000357179	human	ensembl	70_37	-1	known	missense	c.406	p.V136I	0.997	pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain	pfam_Topo_IA_cen,pfam_Toprim_domain,superfamily_Topo_IA_core_domain,smart_Toprim_domain,smart_Topo_IA_2,smart_Topo_IA_DNA-bd,prints_Topo_IA	-	no_errors	TOP3B	HGNC
TRPM5	29850	genome.wustl.edu	37	11	2436530	2436530	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	11	2436530	2436530	G	A	SNP	TRPM5	ENST00000452833	human	ensembl	70_37	-1	known	missense	c.1306	p.R436W	1.000	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC
TTLL4	9654	genome.wustl.edu	37	2	219603344	219603344	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	2	219603344	219603344	G	T	SNP	TTLL4	ENST00000258398	human	ensembl	70_37	+1	known	missense	c.945	p.E315D	0.351	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL4	HGNC
TTLL9	164395	genome.wustl.edu	37	20	30467697	30467697	+	Silent	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	20	30467697	30467697	G	A	SNP	TTLL9	ENST00000375934	human	ensembl	70_37	+1	known	silent	c.12	p.P4	0.982	NULL	pfam_Tub_tyr_ligase	-	no_errors	TTLL9	HGNC
TUBGCP5	114791	genome.wustl.edu	37	15	22867457	22867457	+	Splice_Site	SNP	G	G	C			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	15	22867457	22867457	G	C	SNP	TUBGCP5	ENST00000283645	human	ensembl	70_37	+1	known	splice_site	c.2534-1	e19-1	1.000	-	-	-	no_errors	TUBGCP5	HGNC
VCAN	1462	genome.wustl.edu	37	5	82833083	82833083	+	Missense_Mutation	SNP	C	C	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	5	82833083	82833083	C	T	SNP	VCAN	ENST00000265077	human	ensembl	70_37	+1	known	missense	c.4261	p.P1421S	1.000	NULL	pfam_Link,pfam_C-type_lectin,pfam_Ig_V-set,pfam_EG-like_dom,pfam_Sushi_SCR_CCP,superfamily_C-type_lectin_fold,superfamily_Complement_control_module,smart_Ig_sub,smart_Link,smart_EG-like_dom,smart_EGF-like_Ca-bd,smart_C-type_lectin,smart_Sushi_SCR_CCP,pfscan_EG-like_dom,pfscan_C-type_lectin,pfscan_Link,pfscan_Sushi_SCR_CCP,pfscan_Ig-like,prints_Link	-	no_errors	VCAN	HGNC
VCL	7414	genome.wustl.edu	37	10	75857001	75857001	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	10	75857001	75857001	G	T	SNP	VCL	ENST00000211998	human	ensembl	70_37	+1	known	missense	c.1783	p.V595L	1.000	pfam_Vinculin/catenin,superfamily_Vinculin/catenin	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Vinculin	-	no_errors	VCL	HGNC
VEGFC	7424	genome.wustl.edu	37	4	177648970	177648970	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	177648970	177648970	G	T	SNP	VEGFC	ENST00000280193	human	ensembl	70_37	-1	known	missense	c.514	p.Q172K	1.000	pfam_PD_growth_factor,smart_PD_growth_factor,pfscan_PD_growth_factor	pfam_PD_growth_factor,pfam_CXCXC_repeat,smart_PD_growth_factor,pfscan_PD_growth_factor	-	no_errors	VEGFC	HGNC
WDR17	116966	genome.wustl.edu	37	4	177058704	177058704	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	177058704	177058704	G	A	SNP	WDR17	ENST00000280190	human	ensembl	70_37	+1	known	missense	c.1373	p.R458Q	1.000	superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDR17	HGNC
WDR70	55100	genome.wustl.edu	37	5	37392223	37392223	+	Splice_Site	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	5	37392223	37392223	G	T	SNP	WDR70	ENST00000265107	human	ensembl	70_37	+1	known	splice_site	c.296+1	e4+1	0.997	-	-	-	no_errors	WDR70	HGNC
WNT16	51384	genome.wustl.edu	37	7	120979235	120979235	+	Missense_Mutation	SNP	C	C	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	7	120979235	120979235	C	A	SNP	WNT16	ENST00000222462	human	ensembl	70_37	+1	known	missense	c.934	p.R312S	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt16,prints_Wnt	-	no_errors	WNT16	HGNC
YTHDC1	91746	genome.wustl.edu	37	4	69188587	69188587	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	4	69188587	69188587	G	T	SNP	YTHDC1	ENST00000344157	human	ensembl	70_37	-1	known	missense	c.1481	p.P494H	0.994	NULL	pfam_YTH_domain,pfscan_YTH_domain	-	no_errors	YTHDC1	HGNC
ZBBX	79740	genome.wustl.edu	37	3	167068260	167068260	+	Missense_Mutation	SNP	G	G	T			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	3	167068260	167068260	G	T	SNP	ZBBX	ENST00000307529	human	ensembl	70_37	-1	known	missense	c.476	p.A159D	1.000	pfam_Znf_B-box	pfam_Znf_B-box	-	no_errors	ZBBX	HGNC
ZNF252P	286101	genome.wustl.edu	37	8	146202714	146202714	+	RNA	SNP	T	T	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	8	146202714	146202714	T	A	SNP	ZNF252P	ENST00000426361	human	ensembl	70_37	-1	known	rna	NULL	NULL	0.077	-	-	-	no_errors	ZNF252P	HGNC
ZP2	7783	genome.wustl.edu	37	16	21210183	21210183	+	Missense_Mutation	SNP	G	G	A			TCGA-JW-A69B-01A-11D-A32I-09	TCGA-JW-A69B-10A-01D-A32I-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none			Illumina HiSeq	8f6180ec-2423-415c-ab25-7a8ee6ac5176	3ff4c312-9503-4618-ad53-f68e8241be5c	16	21210183	21210183	G	A	SNP	ZP2	ENST00000219593	human	ensembl	70_37	-1	known	missense	c.1928	p.A643V	0.695	NULL	pfam_ZP_dom,smart_ZP_dom,pfscan_ZP_dom,prints_ZP_dom	-	no_errors	ZP2	HGNC