Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov_SOL TVarCov_SOL NTotCov_SOL NVarCov_SOL dbSNPPopFreq COSMIC_Gene_Freq MAGEC1 9947 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 140994602 140994602 + Missense_Mutation SNP A A T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_005462 exon4 c.A1412T p.E471V CTTTTGAGGGTTT . 95 21 76 0 . . GPS1 2873 hgsc.bcm.edu 37 17 80012466 80012466 + Missense_Mutation SNP C C T rs139982509 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_212492 exon4 c.C509T p.T170M AGGCCACGCGGAA . 97 4 83 0 0.000 . PI4KA 5297 hgsc.bcm.edu;bcgsc.ca 37 22 21153979 21153979 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_058004 exon15 c.C1800T p.Y600Y AGAGATGTAGAGC . 45 4 29 0 . . DLL1 28514 hgsc.bcm.edu 37 6 170597856 170597856 + Nonsense_Mutation SNP C C A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_005618 exon3 c.G373T p.E125X GAGCTTCAATAAT . 105 4 91 0 . . GREB1 9687 hgsc.bcm.edu 37 2 11735403 11735403 + Nonsense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_014668 exon12 c.G1723T p.E575X CTTTCCGAGAGCC . 99 4 57 0 . . CAV1 857 hgsc.bcm.edu 37 7 116199003 116199003 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 CAV1,NS,neuroblastoma,0,1 CAV1 NM_001753 exon3 c.G199T p.D67Y TAGATTGACTTTG . 42 3 29 0 . 0 SLC13A3 64849 hgsc.bcm.edu 37 20 45192078 45192078 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 SLC13A3,NS,carcinoma,0,1 SLC13A3 NM_022829 exon12 c.C1607A p.S536Y TGTCCAGAGGCGA . 43 2 45 0 . 0 MICALL1 85377 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 38323501 38323501 + Missense_Mutation SNP G G C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_033386 exon9 c.G1549C p.E517Q TCGTCTGAGAGCG . 54 5 41 0 . . ZNF208 7757 hgsc.bcm.edu;broad.mit.edu 37 19 22157034 22157034 + Nonsense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_007153 exon4 c.C802T p.Q268X CAGATTGGTTAAA . 55 5 45 0 . . SCNN1A 6337 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 6471245 6471245 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001159576 exon3 c.C1024A p.R342S TGAAGCGGCAGGC . 41 6 30 0 . . SHPRH 257218 hgsc.bcm.edu 37 6 146268687 146268687 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_173082 exon6 c.C1154A p.A385D ATCAGAGCCAAAA . 52 3 67 0 . . TBC1D2B 23102 hgsc.bcm.edu 37 15 78305220 78305220 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 TBC1D2B_ENST00000300584,colon,carcinoma,0,2 TBC1D2B_ENST00000300584 NM_144572 exon9 c.C2215A p.L739I CGAGGAGGACATT . 36 2 22 0 . 0 CDK15 65061 hgsc.bcm.edu;bcgsc.ca 37 2 202672307 202672307 + Missense_Mutation SNP A A G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001261435 exon2 c.A214G p.R72G AGTAAAAGGCCAC . 79 4 59 0 . . GABRB3 2562 hgsc.bcm.edu 37 15 26812850 26812850 + Missense_Mutation SNP C C A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 GABRB3_ENST00000541819,rectum,carcinoma,-1,3 GABRB3_ENST00000541819 NM_021912 exon7 c.G713T p.R238L TTCAACCGAAAGC . 46 2 36 0 . -1 MAP3K1 4214 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 56178366 56178366 + Silent SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_005921 exon14 c.C3339T p.F1113F AGTGTTCACCCCA . 57 6 41 0 . . KRTAP4-3 85290 hgsc.bcm.edu 37 17 39324095 39324095 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_033187 exon1 c.C330T p.C110C AGGCCTGCAGCAA . 87 4 88 0 . . CCDC15 80071 hgsc.bcm.edu 37 11 124862504 124862504 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_025004 exon10 c.G2060T p.R687I AAGAAAGAGTGAG . 82 4 48 0 . . CLDN16 10686 hgsc.bcm.edu 37 3 190106072 190106072 + Missense_Mutation SNP G G A rs201380153 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 .,1 . NM_006580 exon1 c.G164A p.R55K GGGCCAGGGCTGG . 38 5 24 0 . 59 FAM193A 8603 hgsc.bcm.edu 37 4 2698243 2698243 + Nonsense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 FAM193A,NS,NS,0,1 FAM193A NM_001256667 exon17 c.C2623T p.Q875X TTGTTGCAGTTTA . 80 4 70 0 . 0 SIGLEC16 400709 hgsc.bcm.edu 37 19 50475311 50475311 + RNA SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . ACGCTCGGCACCC . 68 8 34 0 . . NUMBL 9253 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 41183174 41183174 + Silent SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_004756 exon7 c.G693A p.G231G AGGCCGCCCACCC . 71 5 65 0 . . HLA-F 3134 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 29693309 29693309 + Silent SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001098479 exon5 c.C972T p.V324V TGTGGTCGCTGCT . 76 5 42 0 . . XIRP2 129446 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 168115754 168115754 + Missense_Mutation SNP G G C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001199143 exon11 c.G2797C p.D933H GGTTTTGATGCTC . 56 8 58 0 . . ENTPD1-AS1 0 hgsc.bcm.edu 37 10 97582886 97582886 + RNA SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . TTTAATCTGTCTC . 77 4 49 0 . . SLC19A3 80704 hgsc.bcm.edu 37 2 228564115 228564115 + Missense_Mutation SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 SLC19A3,NS,carcinoma,0,1 SLC19A3 NM_025243 exon3 c.A316G p.M106V CCTGCATGGTCTT . 58 4 41 0 . 0 DNAJC2 27000 hgsc.bcm.edu;bcgsc.ca 37 7 102953518 102953518 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_014377 exon16 c.C1667A p.T556K TCTTCTGTTGTCC . 57 4 52 0 . . EML5 161436 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 89220900 89220900 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_183387 exon2 c.C313A p.H105N GTGTATGAACATC . 110 11 89 0 . . CHRNB1 1140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 7357773 7357773 + Silent SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_000747 exon8 c.T978C p.S326S CCTTAGTGTCGTG . 39 5 27 0 . . PTPN14 5784 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 214557314 214557314 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_005401 exon13 c.C1884T p.L628L GGCCGTGAGGGGC . 33 7 16 0 . . SLC6A18 348932 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 1232354 1232354 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 SLC6A18,NS,carcinoma,0,1 SLC6A18 NM_182632 exon2 c.G181A p.V61I CCCTACGTCATCG . 53 4 46 0 . 0 CYTB 0 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 MT 15591 15591 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . ENST00000361789 exon1 c.G845A p.R282Q TTCTCCGATCCGT . 7 4 18 0 . . KYNU 8942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 143799625 143799625 + Missense_Mutation SNP C C G rs147475752 alternate_allele TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001199241 exon15 c.C1282G p.R428G GACAAGCGGAATC . 107 20 86 0 . . RNU6-76 100873777 hgsc.bcm.edu 37 16 33503759 33503759 + RNA SNP T T A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . GCTTTCTCCTTCA . 527 30 395 0 . . MUC1 4582 hgsc.bcm.edu 37 1 155161733 155161733 + Missense_Mutation SNP G G C rs113445744 bycluster TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 MUC1_ENST00000368395,extremity,malignant_melanoma,0,3 MUC1_ENST00000368395 NM_001204286 exon2 c.C427G p.P143A GGGCTGGGGGGGC . 12 3 10 1 . 0 DOCK7 85440 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 63018485 63018485 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001271999 exon22 c.G2684A p.R895Q AGGCTTCGAGAAC . 83 10 70 0 . . IL12RB2 3595 hgsc.bcm.edu 37 1 67787288 67787288 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 IL12RB2,NS,carcinoma,0,1 IL12RB2 NM_001559 exon3 c.C80T p.A27V CAGATGCGTGCAA . 57 3 43 0 . 0 AFF4 27125 hgsc.bcm.edu 37 5 132228047 132228047 + Missense_Mutation SNP C C A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 AFF4,right_upper_lobe,carcinoma,0,1 AFF4 NM_014423 exon13 c.G2446T p.A816S GCCCAGCGGGAGA . 40 2 35 0 . 0 NFKB2 4791 hgsc.bcm.edu 37 10 104157319 104157319 + Nonsense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 NFKB2,NS,carcinoma,0,1 NFKB2 NM_001077494 exon8 c.G538T p.E180X GCCAAAGAACTGA . 33 2 27 0 . 0 HYDIN 54768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 71015307 71015307 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001270974 exon29 c.C4497T p.P1499P GTTCCTGGGGAGA . 71 9 47 0 . . MAP3K11 4296 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 65373425 65373425 + Missense_Mutation SNP C C G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 MAP3K11,NS,carcinoma,0,1 MAP3K11 NM_002419 exon7 c.G1731C p.Q577H CCCATTCTGGGCT . 62 5 30 0 . 0 HTT 3064 hgsc.bcm.edu;bcgsc.ca 37 4 3213728 3213728 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_002111 exon48 c.G6487T p.A2163S AAGAGTGCCCTTT . 56 4 54 0 . . ADAMTS17 170691 hgsc.bcm.edu;bcgsc.ca 37 15 100802574 100802574 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_139057 exon5 c.C856A p.L286M GTAGCAGGACAAG . 59 4 48 0 . . GSTK1 373156 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 142960620 142960620 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 GSTK1_ENST00000479303,NS,haematopoietic_neoplasm,0,4 GSTK1_ENST00000479303 NM_001143681 exon1 c.C14T p.P5L CCCTGCCGCGCAC . 44 5 41 0 . 0 FAM205B 389715 hgsc.bcm.edu 37 9 34834808 34834808 + RNA SNP A A G rs525385 by2hit2allele TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 C9orf144,NS,carcinoma,0,1 C9orf144 . . . . CACCCAATTTGGC . 46 3 57 2 . 0 KIAA0195 9772 hgsc.bcm.edu 37 17 73482012 73482012 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_014738 exon4 c.G205T p.G69W TGGCCGGGGGCCT . 100 4 75 0 . . MUC5B 727897 hgsc.bcm.edu 37 11 1255536 1255536 + Splice_Site SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_002458 exon20 c.2478+1G>T . GGCTGTGTGAGTT . 62 5 38 0 . . ZUFSP 221302 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 116957009 116957009 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_145062 exon10 c.G1723A p.E575K TCTTCTCGGCTGT . 42 4 33 0 . . ADC 113451 hgsc.bcm.edu 37 1 33583665 33583665 + Missense_Mutation SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_052998 exon11 c.T1192C p.F398L TCCCCCTTTTGGG . 96 4 46 0 . . RUNX2 860 hgsc.bcm.edu 37 6 45390463 45390463 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 RUNX2_ENST00000352853,NS,carcinoma,0,2 RUNX2_ENST00000352853 NM_001024630 exon3 c.G192A p.Q64Q GCAGCAGCAACAG . 48 3 41 0 . 0 SSPO 23145 hgsc.bcm.edu 37 7 149503932 149503932 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_198455 exon60 c.C8756T p.T2919M AGTGTACGGGCTT . 67 4 61 0 . . PCSK9 255738 hgsc.bcm.edu 37 1 55505552 55505552 + Silent SNP A A G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 .,7 . NM_174936 exon1 c.A42G p.P14P GCTGCCACTGCTG . 69 3 63 0 . 76 RSG1 79363 hgsc.bcm.edu 37 1 16563182 16563182 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_030907 exon1 c.C56T p.A19V CCCTCGGCACTCT . 70 4 55 0 . . PCDHB8 56128 hgsc.bcm.edu 37 5 140559572 140559572 + Missense_Mutation SNP T T C rs17844504 bycluster TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 PCDHB8,NS,malignant_melanoma,0,1 PCDHB8 NM_019120 exon1 c.T1957C p.C653R CCTCCGTGCTCGG . 98 5 72 0 . 0 GALNTL5 168391 hgsc.bcm.edu 37 7 151680104 151680104 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 GALNTL5,NS,carcinoma,0,1 GALNTL5 NM_145292 exon4 c.G402A p.P134P CCTCCCGACTGCC . 64 3 57 0 . 0 MGST1 4257 hgsc.bcm.edu 37 12 16516728 16516728 + Splice_Site SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_145792 exon4 c.222-1G>T . TCCACAGAGCCCA . 95 4 67 0 . . KIF21A 55605 hgsc.bcm.edu;bcgsc.ca 37 12 39752014 39752014 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001173463 exon8 c.C1181A p.T394K AGTCGTGTGATTT . 90 4 72 0 . . DPF3 8110 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 73140954 73140954 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_012074 exon8 c.C865T p.R289C CAGAGCGTCCACA . 58 5 48 0 . . RASA1 5921 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 5 86672323 86672323 + Nonsense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 RASA1_ENST00000456692,NS,carcinoma,0,2 RASA1_ENST00000456692 NM_002890 exon16 c.C2125T p.R709X CGTGTTCGAGCAC . 123 25 114 0 . 0 DOCK1 1793 hgsc.bcm.edu;bcgsc.ca 37 10 128817096 128817096 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001380 exon13 c.C1261T p.P421S ATCATGCCTGGTA . 67 4 40 0 . . ABCC9 10060 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 22089573 22089573 + Silent SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_005691 exon1 c.A36G p.S12S ATTATATGAAGAA . 74 7 58 0 . . PKHD1 5314 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 6 51921499 51921499 + Nonsense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_170724 exon18 c.C1690T p.R564X CACCTCGTTCAAA . 82 13 55 0 . . SLC2A10 81031 hgsc.bcm.edu 37 20 45358084 45358084 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_030777 exon4 c.G1504T p.G502C ACAAAAGGCCAGT . 75 4 41 0 . . TRUB1 142940 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 116734973 116734973 + Nonsense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 TRUB1,NS,carcinoma,0,1 TRUB1 NM_139169 exon8 c.G885A p.W295X CAAATGGACAATT . 60 8 54 0 . 0 MLF1IP 79682 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 4 185638302 185638302 + Silent SNP A A T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_024629 exon5 c.T369A p.I123I TGCACTAATTTTT . 48 4 46 0 . . CHID1 66005 hgsc.bcm.edu 37 11 884165 884165 + Missense_Mutation SNP C C A rs143837907 alternate_allele TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 CHID1,NS,carcinoma,0,1 CHID1 NM_001142676 exon10 c.G781T p.D261Y GCTGGTCGGTCCT . 36 3 26 0 . 0 CXCR1 3577 hgsc.bcm.edu 37 2 219029811 219029811 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 CXCR1,NS,carcinoma,0,1 CXCR1 NM_000634 exon2 c.G124A p.V42M TGATCACAACATA . 29 2 24 0 . 0 PBK 55872 hgsc.bcm.edu 37 8 27690596 27690596 + Missense_Mutation SNP T T A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 PBK_ENST00000301905,colon,carcinoma,0,2 PBK_ENST00000301905 NM_018492 exon2 c.A35T p.K12I GATAATTTGCTTG . 35 2 36 0 . 0 TSPAN16 26526 hgsc.bcm.edu;bcgsc.ca 37 19 11408920 11408920 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_012466 exon2 c.G172T p.G58C CACGTTGGCAACC . 64 4 48 0 . . ZNF610 162963 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 52852438 52852438 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001161427 exon3 c.G13A p.E5K TGTGATGAAGAAG . 50 8 28 0 . . MUC12 10071 hgsc.bcm.edu 37 7 100634194 100634194 + Missense_Mutation SNP C C G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 MUC12,tonsil,carcinoma,0,1 MUC12 NM_001164462 exon2 c.C350G p.A117G CTTCAGCCTCAAT . 118 6 84 0 . 0 CEL 1056 hgsc.bcm.edu 37 9 135947131 135947131 + Missense_Mutation SNP C C A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 CEL,caecum,carcinoma,0,1 CEL NM_001807 exon11 c.C2251A p.P751T CAGATGCCTGCAG . 48 2 51 0 . 0 AAK1 22848 hgsc.bcm.edu 37 2 69741753 69741753 + Silent SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_014911 exon13 c.G1626A p.Q542Q CTGTTGCTGTTGT . 41 4 40 0 . . BTN3A1 11119 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 26411341 26411341 + Silent SNP A A G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_007048 exon8 c.A969G p.G323G AGGGGGAGAGAGA . 74 4 52 0 . . AKAP1 8165 hgsc.bcm.edu 37 17 55195744 55195744 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 AKAP1,middle_lobe,carcinoma,0,2 AKAP1 NM_001242902 exon10 c.G2503A p.D835N GAAGACGATGACC . 46 2 26 0 . 0 CSF1R 1436 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 149450020 149450020 + Silent SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_005211 exon8 c.A1197G p.R399R CTCACATCGAAGG . 38 5 30 0 . . PIP4K2C 79837 hgsc.bcm.edu 37 12 57994636 57994636 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 .,1 . NM_001146258 exon8 c.G856T p.G286C CTGCTAGGCATCC . 43 2 23 0 . 50 SRSF6 6431 hgsc.bcm.edu 37 20 42088724 42088724 + Nonsense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 SRSF6_ENST00000244020,caecum,carcinoma,0,3 SRSF6_ENST00000244020 NM_006275 exon4 c.C433T p.R145X AAGGAACGAACAA . 38 2 43 0 . 0 ASCC1 51008 hgsc.bcm.edu;broad.mit.edu;ucsc.edu 37 10 73956736 73956736 + Nonsense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001198799 exon6 c.C406T p.Q136X GATGCTGGCCAGT . 108 11 75 0 . . SUPT6H 6830 hgsc.bcm.edu 37 17 27008381 27008381 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 SUPT6H,NS,carcinoma,0,1 SUPT6H NM_003170 exon12 c.G1457A p.R486H CTAGCCGCAAGAA . 46 2 35 0 . 0 XIRP2 129446 hgsc.bcm.edu 37 2 168104887 168104887 + Silent SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_152381 exon9 c.C6985T p.L2329L CCCTCACTGTCCA . 93 4 51 0 . . FLNB 2317 hgsc.bcm.edu;bcgsc.ca 37 3 58095323 58095323 + Silent SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001457 exon15 c.C2220T p.S740S AGGTAGCCATCCT . 78 5 80 0 . . TTF1 7270 hgsc.bcm.edu 37 9 135277219 135277219 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 TTF1,NS,lymphoid_neoplasm,0,1 TTF1 NM_007344 exon2 c.C990A p.N330K AGACTTGTTTTTA . 40 10 22 1 . 0 SNX29 92017 hgsc.bcm.edu 37 16 12093200 12093200 + Silent SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_032167 exon2 c.G54T p.L18L ACTGCTGGATGCA . 63 3 46 0 . . SCN7A 6332 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 167269613 167269613 + Missense_Mutation SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_002976 exon21 c.A3433G p.I1145V TAGTGATCCATCC . 94 11 84 0 . . DST 667 hgsc.bcm.edu 37 6 56464980 56464980 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_015548 exon26 c.C3712A p.Q1238K TCCCTTGGAGTTT . 107 5 73 0 . . PKD1L1 168507 hgsc.bcm.edu 37 7 47876572 47876572 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 PKD1L1,NS,carcinoma,0,1 PKD1L1 NM_138295 exon37 c.C5890A p.L1964M CGCACAGCAGGGA . 45 2 36 0 . 0 N4BP2 55728 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 40122733 40122733 + Missense_Mutation SNP A A G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_018177 exon9 c.A3002G p.Q1001R AAGAGCAAATGCC . 52 11 55 0 . . PDE4DIP 9659 hgsc.bcm.edu 37 1 144879561 144879561 + Missense_Mutation SNP A A G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 PDE4DIP_ENST00000369356,NS,carcinoma,0,7 PDE4DIP_ENST00000369356 NM_014644 exon27 c.T3889C p.C1297R CCTCACACTCTGA . 92 6 60 2 . 0 FBN2 2201 hgsc.bcm.edu 37 5 127714472 127714472 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 FBN2_ENST00000508053,NS,carcinoma,0,1 FBN2_ENST00000508053 NM_001999 exon12 c.C1715A p.A572E ATGCATGCTTGCT . 44 2 51 0 . 0 C20orf26 26074 hgsc.bcm.edu 37 20 20056250 20056250 + Missense_Mutation SNP G G T rs200143211 alternate_allele TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 C20orf26,caecum,carcinoma,0,1 C20orf26 NM_015585 exon6 c.G557T p.R186L ACGTTCGCAAAGC . 46 2 44 0 . 0 PCDH20 64881 hgsc.bcm.edu 37 13 61986532 61986532 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 PCDH20_ENST00000409186,NS,carcinoma,0,2 PCDH20_ENST00000409186 NM_022843 exon2 c.G1700A p.R567K TGGCCTCTCTCCT . 40 2 27 0 . 0 GALNT14 79623 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 31168695 31168695 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001253826 exon8 c.C711T p.N237N GTCCAGGTTAATG . 68 10 79 0 . . KCNJ14 3770 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 19 48967866 48967866 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_013348 exon3 c.G1143T p.Q381H TAGTTTCCCCGGC . 24 6 24 0 . . ANKRD32 84250 hgsc.bcm.edu 37 5 93966366 93966366 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 ANKRD32_ENST00000265140,colon,carcinoma,0,1 ANKRD32_ENST00000265140 NM_032290 exon4 c.C349T p.R117C CTGAAACGCACTG . 46 2 50 0 . 0 EZH2 2146 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 148523609 148523609 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001203247 exon8 c.C844A p.H282N GCGTATGAAAGGA . 69 5 44 0 . . PRR11 55771 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 57247159 57247159 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_018304 exon2 c.G46A p.E16K AAAGCCGAAAGAT . 138 11 101 0 . . MAN1C1 57134 hgsc.bcm.edu 37 1 26079974 26079974 + Splice_Site SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 MAN1C1,NS,carcinoma,0,1 MAN1C1 NM_020379 exon5 c.835-1G>T . TTTACAGGTGTTC . 47 2 39 1 . 0 RNF212 285498 hgsc.bcm.edu 37 4 1087255 1087255 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001193318 exon4 c.C794A p.A265E CACCCTGCGTTTG . 109 4 112 0 . . TMED8 283578 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 77810058 77810058 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_213601 exon4 c.C436T p.L146L CCCCCAGAAGATC . 69 7 62 0 . . ELK1 2002 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 47496463 47496463 + Missense_Mutation SNP C C G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001114123 exon6 c.G1137C p.W379C GGTGCTCCAGAAG . 55 6 30 0 . . CLCA2 9635 hgsc.bcm.edu 37 1 86913194 86913194 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 CLCA2,NS,carcinoma,0,1 CLCA2 NM_006536 exon11 c.G1717T p.G573W CAGCCTGGGCACT . 69 3 58 0 . 0 PIWIL2 55124 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 22145050 22145050 + Silent SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001135721 exon7 c.G753T p.V251V CAATGTGGAGTGC . 61 6 47 0 . . SV2A 9900 hgsc.bcm.edu 37 1 149879665 149879665 + Silent SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 SV2A,colon,carcinoma,0,1 SV2A NM_014849 exon9 c.C1473A p.R491R CTCTACGCGCTCC . 41 2 32 0 . 0 ALPK3 57538 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 85401487 85401487 + Missense_Mutation SNP G G C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_020778 exon6 c.G4124C p.R1375T AGGTCAGAGCAGC . 187 15 120 0 . . PRG4 10216 hgsc.bcm.edu 37 1 186276262 186276262 + Missense_Mutation SNP A A C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 .,1 . NM_005807 exon7 c.A1411C p.T471P CCCACCACCAAGG . 63 0 56 0 . 259 OR7A5 26659 hgsc.bcm.edu 37 19 14938184 14938184 + Silent SNP A A G rs200531878 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 OR7A5,NS,carcinoma,0,1 OR7A5 NM_017506 exon1 c.T870C p.Y290Y CAGACTATAGATA . 75 3 53 0 0.001 0 ACACB 32 hgsc.bcm.edu 37 12 109644547 109644547 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 ACACB,right_upper_lobe,carcinoma,0,1 ACACB NM_001093 exon19 c.G2946T p.Q982H TGCCCAGCAGACA . 50 2 48 0 . 0 ADAMTS18 170692 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 77353780 77353780 + Missense_Mutation SNP G G A rs147816593 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 ADAMTS18,rectum,carcinoma,0,3 ADAMTS18 NM_199355 exon16 c.C2498T p.A833V CCTGGCGCGTACA . 70 6 49 0 0.000 0 LFNG 3955 hgsc.bcm.edu 37 7 2552881 2552881 + Silent SNP A A G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 LFNG_ENST00000402506,caecum,carcinoma,0,2 LFNG_ENST00000402506 NM_001166355 exon2 c.A138G p.T46T ATGGACAGATGGA . 38 5 28 0 . 0 TRHDE 29953 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 73015434 73015434 + Missense_Mutation SNP A A G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A A . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_013381 exon15 c.A2443G p.R815G CTACGTAGAGAAG . 47 7 46 0 . . RNR1 6052 hgsc.bcm.edu 37 MT 689 689 + RNA SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . GTAAGATTACACA . 490 118 495 0 . . NES 10763 hgsc.bcm.edu 37 1 156642556 156642556 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 NES,NS,haematopoietic_neoplasm,+1,1 NES NM_006617 exon4 c.C1424A p.S475Y AAACTGGAGTGGT . 39 3 49 0 . +1 CEP95 90799 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 62533848 62533848 + Missense_Mutation SNP C C G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_138363 exon20 c.C2417G p.S806C TCAGATCTCGGCT . 76 6 75 0 . . TOX3 27324 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 52473515 52473515 + Silent SNP C C T rs374335680 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001080430 exon7 c.G1353A p.Q451Q TTGTTGCTGCTGC . 48 4 34 0 . . TENM2 57451 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 167675119 167675119 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001122679 exon27 c.C7148T p.T2383M AGTACACGGCCTA . 58 4 32 0 . . ZNF292 23036 hgsc.bcm.edu 37 6 87964852 87964852 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_015021 exon8 c.G1505T p.G502V GAGTTGGTGCTAA . 64 3 38 0 . . TARBP1 6894 hgsc.bcm.edu 37 1 234569297 234569297 + Nonsense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_005646 exon14 c.C2253A p.C751X TAAATGGCAACGA . 99 4 58 0 . . C2CD2 25966 hgsc.bcm.edu 37 21 43327232 43327232 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 .,1 . NM_015500 exon10 c.C1187A p.P396H GGGGGAGGGATGG . 35 3 36 0 . 47 DFNB59 494513 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 179318221 179318221 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001042702 exon2 c.G85A p.D29N GAAGCTGACAAAT . 94 5 68 0 . . CDC27 996 hgsc.bcm.edu 37 17 45234357 45234357 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001114091 exon7 c.C764A p.S255Y TGTTTAGATAATA . 120 4 79 0 . . DMXL2 23312 hgsc.bcm.edu 37 15 51809289 51809289 + Missense_Mutation SNP C C T rs199866251 bycluster TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 DMXL2,colon,carcinoma,0,2 DMXL2 NM_001174117 exon14 c.G2512A p.A838T TTATTGCGTCGAG . 87 3 80 0 . 0 TCHH 7062 hgsc.bcm.edu 37 1 152084627 152084627 + Missense_Mutation SNP C C G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 TCHH,NS,carcinoma,0,2 TCHH NM_007113 exon3 c.G1066C p.E356Q CCTCCTCCTGCTC . 36 4 19 1 . 0 TMEM178A 130733 hgsc.bcm.edu 37 2 39944386 39944386 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 TMEM178,NS,malignant_melanoma,0,1 TMEM178 NM_152390 exon4 c.G889T p.V297L TCCACGGTATGAC . 31 2 26 0 . 0 BGN 633 hgsc.bcm.edu;bcgsc.ca 37 X 152771327 152771327 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001711 exon4 c.G358T p.V120F GCCCTCGTCCTGG . 53 4 35 0 . . SPTBN1 6711 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 54858390 54858390 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_003128 exon16 c.G3206T p.R1069L TCCTACGGGACTT . 35 7 39 0 . . ARHGEF38 54848 hgsc.bcm.edu;broad.mit.edu 37 4 106552107 106552107 + Nonsense_Mutation SNP C C G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001242729 exon4 c.C561G p.Y187X AATCTACTGCTAT . 50 5 43 0 . . CLNK 116449 hgsc.bcm.edu;bcgsc.ca 37 4 10560060 10560060 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_052964 exon8 c.C416A p.S139Y TCCTTGGAAATGG . 91 4 82 0 . . PRMT7 54496 hgsc.bcm.edu 37 16 68355328 68355328 + Splice_Site SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001184824 exon3 c.96-1G>T . TTTTTAGGTCATC . 99 4 100 0 . . FCRLA 84824 hgsc.bcm.edu 37 1 161682007 161682007 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 FCRLA_ENST00000367959,NS,carcinoma,0,2 FCRLA_ENST00000367959 NM_001184866 exon5 c.G852T p.Q284H AGTGCAGGGTGAG . 22 2 12 0 . 0 MARK4 57787 hgsc.bcm.edu;bcgsc.ca 37 19 45790748 45790748 + Silent SNP G G T rs112982501 bycluster TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001199867 exon13 c.G1320T p.T440T CCCGACGAGCACG . 70 4 63 0 . . LRRC71 149499 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156901798 156901798 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_144702 exon13 c.C1420T p.L474F AAGGTCCTTTTGC . 76 8 52 0 . . KHK 3795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 27310211 27310211 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_006488 exon1 c.G84A p.S28S GGACTCGGAGATA . 61 18 59 0 . . APOB 338 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 21246522 21246522 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 APOB,NS,carcinoma,0,1 APOB NM_000384 exon17 c.C2479A p.L827I AGTGAAGAAAAAA . 84 10 64 0 . 0 LAMA4 3910 hgsc.bcm.edu 37 6 112510361 112510361 + Nonsense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . NM_001105206 exon7 c.C765A p.C255X TTCCAAGCATTCT . 87 3 57 0 . . GLG1 2734 hgsc.bcm.edu 37 16 74502875 74502875 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 GLG1,NS,carcinoma,0,1 GLG1 NM_001145667 exon17 c.G2405A p.R802H TGCCTGCGGCACT . 42 3 39 0 . 0 CROCCP2 0 broad.mit.edu 37 1 16957311 16957311 + RNA SNP A A C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . GCCCCCACCCCCA . 53 7 44 2 . . CROCCP3 0 broad.mit.edu 37 1 16812982 16812982 + RNA SNP A A C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . CCTTCTAGTGGAG . 51 8 38 1 . . OR2T12 127064 broad.mit.edu;bcgsc.ca 37 1 248458309 248458309 + Missense_Mutation SNP G G A rs138674715 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . OR2T12 NM_001004692 exon1 c.C572T p.S191L AAGACTGAAGTGT . 83 12 64 0 G|1.000;A|0.000 113 . 0 broad.mit.edu 37 1 112810518 112810518 + RNA DEL G G - novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . TTTTTTGACTGGT . 159 14 101 0 . . OR10A5 144124 broad.mit.edu 37 11 6867462 6867462 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 OR10A5,NS,carcinoma,0,3 OR10A5 NM_178168 exon1 c.G549A p.P183P CAGCCCGCCTGTG . 57 4 42 0 . 48 OR51A4 401666 broad.mit.edu 37 11 4967834 4967834 + Missense_Mutation SNP C C G rs201205025 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 OR51A4,colon,carcinoma,-1,1 OR51A4 NM_001005329 exon1 c.G497C p.R166T AAGTTTCTTAAAG . 70 3 54 1 . 73 SLC43A3 29015 broad.mit.edu 37 11 57177487 57177487 + Missense_Mutation SNP G G C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . SLC43A3 NM_017611 exon12 c.C1168G p.L390V ACTGGAGAGGGAG . 55 3 31 0 . 54 ANKRD33 341405 broad.mit.edu 37 12 52284827 52284827 + Missense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . ANKRD33 NM_182608 exon5 c.C1097T p.S366F AGAGGTCCCCGTG . 20 3 21 0 . 33 NAP1L1 4673 broad.mit.edu 37 12 76444323 76444323 + Missense_Mutation SNP A A T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . NAP1L1 NM_004537 exon12 c.T1047A p.D349E ATCATCATCTTCA . 70 3 60 0 . 33 ENOX1 55068 broad.mit.edu 37 13 43930059 43930059 + Silent SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 ENOX1_ENST00000261488,NS,carcinoma,-1,2 ENOX1 NM_017993 exon8 c.G819A p.L273L ACCTTTCAGCTTT . 39 4 34 0 . 158 MIR548F5 26960 broad.mit.edu 37 13 36220028 36220028 + Missense_Mutation SNP G G C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . TCATTAGAGACCC . 44 3 35 0 . . . 0 broad.mit.edu 37 14 106304711 106304711 + RNA SNP C C T rs377697988 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . GAGTGGCGGGTGT . 81 7 89 0 . . JAG2 3714 broad.mit.edu 37 14 105612177 105612177 + Missense_Mutation SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . JAG2 NM_002226 exon23 c.A2843G p.E948G CCGCACTCCCCCC . 94 3 73 1 . 69 OTX2 5015 broad.mit.edu 37 14 57269033 57269033 + Missense_Mutation SNP T T A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . OTX2 NM_001270525 exon3 c.A314T p.Q105L TGTTGCTGTTGTT . 54 5 44 0 . 47 . 0 broad.mit.edu 37 15 102304262 102304264 + RNA DEL GCT GCT - rs373408686 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . CTCAGAGCTGCTG . 85 9 57 8 . . WASH3P 0 broad.mit.edu 37 15 102506815 102506816 + RNA DEL CC CC - rs113122596 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . WASH3P . . . . TCTCCACCTGGAG . 121 18 103 10 CC|0.500;-|0.500 56 RRN3P2 0 broad.mit.edu 37 16 29088010 29088010 + RNA SNP T T G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . TGATTTTTTCAAT . 198 6 152 0 . . KIF19 124602 broad.mit.edu 37 17 72340424 72340424 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . KIF19 NM_153209 exon6 c.G519T p.E173D GCGGGAGGACTCT . 34 3 21 0 . 102 LRRC37A4P 0 broad.mit.edu 37 17 43587569 43587569 + RNA SNP G G C rs2667851 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . CCGTCTGAAAAGA . 100 3 70 1 G|1.000;|0.000 . ROCK1 6093 broad.mit.edu 37 18 18608854 18608854 + Missense_Mutation SNP G G C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . ROCK1 NM_005406 exon10 c.C1094G p.T365S TTACTAGTATCAA . 67 3 39 0 . 162 PRR22 163154 broad.mit.edu 37 19 5784655 5784655 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . PRR22 NM_001134316 exon1 c.C17T p.P6L CAGAACGGTTTGG . 30 3 14 0 . 25 CRIM1 51232 broad.mit.edu 37 2 36583501 36583503 + In_Frame_Del DEL GCT GCT - novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . CRIM1 NM_016441 exon1 c.66_68del p.22_23del GCTGGGGCTGCTG . 10 3 9 0 . 88 FAM126B 285172 broad.mit.edu 37 2 201846200 201846200 + Silent SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . FAM126B NM_173822 exon12 c.C1386A p.G462G TTGACTGCCATTT . 52 3 44 1 . 34 RPL23AP7 0 broad.mit.edu 37 2 114369811 114369811 + RNA SNP G G A rs373861612 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . TCCTTCGCTTTCG . 165 5 102 0 . . RPL23AP7 0 broad.mit.edu 37 2 114369818 114369818 + RNA SNP G G A rs201486476 bycluster TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . CTTTCGGTGCCAT . 168 7 98 1 . . USP34 9736 broad.mit.edu 37 2 61484067 61484067 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . USP34 NM_014709 exon47 c.C6067A p.Q2023K CAGTTTGACTAAC . 148 4 125 0 . 334 MUC4 4585 broad.mit.edu 37 3 195506007 195506007 + Silent SNP G G A rs71635085 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 MUC4_ENST00000463781,NS,carcinoma,0,2 MUC4 NM_018406 exon2 c.C12444T p.T4148T AGGGATGGTGACA . 134 10 79 1 G|1.000;|0.000 1505 LARP1B 55132 broad.mit.edu 37 4 129121738 129121738 + Missense_Mutation SNP T T C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . LARP1B NM_018078 exon17 c.T2227C p.F743L TGGTCCTTTTTCC . 300 6 278 0 . 120 GTF2H2B 0 broad.mit.edu 37 5 69719461 69719461 + RNA DEL T T - novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . CTTTCCTTTTTTT . 32 4 19 0 . . TRIO 7204 broad.mit.edu 37 5 14399006 14399006 + Nonsense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . TRIO NM_007118 exon30 c.G4441T p.E1481X AACATTGAGTCTC . 82 3 70 0 . 305 ZDHHC11 79844 broad.mit.edu 37 5 825360 825360 + Silent SNP T T C rs201174878 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . ZDHHC11 NM_024786 exon8 c.A942G p.K314K CTTGGCTTTGACT . 47 4 48 1 T|0.999;C|0.001 97 C8orf34 116328 broad.mit.edu;bcgsc.ca 37 8 69621314 69621314 + Splice_Site SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . C8orf34 NM_052958 exon9 c.G1327A p.D443N TCATTCGGTAAGT . 34 4 39 0 . 170 NBN 4683 broad.mit.edu 37 8 90983510 90983510 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . NBN NM_002485 exon6 c.C593A p.P198Q AGAGGTGGGTAAA . 173 5 158 0 . 86 PCM1 5108 broad.mit.edu 37 8 17797227 17797227 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . PCM1 NM_006197 exon6 c.G640A p.D214N ATTCGCGATTATA . 101 4 106 0 . 120 PDP1 54704 broad.mit.edu;ucsc.edu 37 8 94935050 94935050 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . PDP1 NM_001161780 exon3 c.G838A p.D280N GTTGGTGATCCTA . 29 4 13 0 . 97 SCRIB 23513 broad.mit.edu 37 8 144887183 144887183 + Splice_Site SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . SCRIB NM_015356 exon20 c.G2672A p.G891D AAGATGCCCTGCA . 25 3 15 0 . 192 KCNV2 169522 broad.mit.edu 37 9 2718784 2718784 + Nonsense_Mutation SNP C C T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . KCNV2 NM_133497 exon1 c.C1045T p.Q349X TACCTTCAGCTGC . 51 3 36 0 . 72 MLLT3 4300 broad.mit.edu 37 9 20414346 20414346 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 MLLT3,NS,carcinoma,0,7 MLLT3 NM_004529 exon5 c.C498T p.S166S GCTACTGCTGCTG . 61 10 53 1 . 125 . 0 broad.mit.edu 37 9 66457314 66457314 + RNA SNP G G C novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . GTTGTGGAGCGAC . 51 5 39 1 . . BCOR 54880 broad.mit.edu 37 X 39933623 39933623 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 Untested Somatic Phase_I WXS none Illumina GAIIx dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . BCOR NM_001123385 exon4 c.C976A p.P326T CCCCCGGCAGGCC . 32 4 21 0 . 351 FEN1 2237 ucsc.edu 37 11 61563066 61563066 + Missense_Mutation SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . FEN1 NM_004111 exon2 c.G233A p.G78D AGAACGGCATCAA . 42 4 21 0 . 15 GXYLT1 283464 ucsc.edu;bcgsc.ca 37 12 42512938 42512938 + Missense_Mutation SNP T T A rs200822565 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 T T Unknown Untested Somatic WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 Q8IXV1_HUMAN,NS,carcinoma,0,4 GXYLT1 NM_173601 exon3 c.A350T p.H117L GCTAGATGCATTT . 87 12 71 1 . 47 ADAMTS10 81794 ucsc.edu 37 19 8651483 8651483 + Missense_Mutation SNP G G T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G Unknown Untested Somatic WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . ADAMTS10 NM_030957 exon20 c.C2362A p.L788I CTTCGAGGCTCTG . 32 4 23 0 . 132 MAGEC3 139081 ucsc.edu;bcgsc.ca 37 X 140984709 140984709 + Missense_Mutation SNP C C A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C C Unknown Untested Somatic WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . MAGEC3 NM_138702 exon7 c.C1165A p.Q389K CTTCCCCAGAGTC . 34 4 26 0 . 228 . 0 bcgsc.ca 37 2 202938380 202938380 + Silent SNP C T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . CCGGGGCCACGGG . 72 4 89 0 . . ABCA12 26154 bcgsc.ca 37 2 215851337 215851337 + Silent SNP G T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 ABCA12,NS,carcinoma,0,1 ABCA12 NM_173076 exon28 c.C4092A p.L1364L CAGATTGAGGTTA . 72 4 63 0 . 368 ANKRD28 23243 bcgsc.ca 37 3 15749477 15749477 + Missense_Mutation SNP C A A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . ANKRD28 NM_015199 exon14 c.G1411T p.G471C TGCAGCCTCTTTC . 31 4 29 0 . 121 TLR9 54106 bcgsc.ca 37 3 52255277 52255277 + Missense_Mutation SNP G T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . TLR9 NM_017442 exon2 c.C3055A p.H1019N AGAAGTGGTGGTT . 23 4 36 0 . 72 ADAM29 11086 bcgsc.ca 37 4 175898005 175898005 + Silent SNP C T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . ADAM29 NM_001130703 exon4 c.C1329T p.C443C TTGTTGCAAAGAC . 50 4 39 0 . 262 MUC21 394263 bcgsc.ca 37 6 30954572 30954572 + Missense_Mutation SNP C T T rs146037191 bycluster TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 MUC21,NS,malignant_melanoma,0,2 MUC21 NM_001010909 exon2 c.C620T p.A207V GTGGGGCCAGCAC . 151 13 86 2 C|0.998;T|0.002 98 POLH 5429 bcgsc.ca 37 6 43581551 43581551 + Missense_Mutation SNP G T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . POLH NM_006502 exon11 c.G1399T p.G467C GGAAGTGGCCCAG . 44 4 36 0 . 54 AIG1 51390 bcgsc.ca 37 6 143382350 143382350 + Splice_Site SNP G T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . AIG1 . . . . TCCCCAGTGATTG . 58 4 42 0 . 24 MUC6 4588 bcgsc.ca 37 11 1016916 1016916 + Missense_Mutation SNP A G G novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 A - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . MUC6 NM_005961 exon31 c.T5885C p.L1962P GTGGGTAGCCTGC . 292 14 213 3 . 408 MUC6 4588 bcgsc.ca 37 11 1017307 1017307 + Missense_Mutation SNP G A A rs372717767 bycluster TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 MUC6_ENST00000421673,NS,carcinoma,0,2 MUC6 NM_005961 exon31 c.C5494T p.P1832S TGTGAGGGTGTGA . 203 11 142 2 . 408 MUC2 4583 bcgsc.ca 37 11 1092845 1092845 + Missense_Mutation SNP C T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . MUC2 NM_002457 exon30 c.C4664T p.T1555I CCGGCACACAGAC . 628 17 325 3 . 614 TMED2 10959 bcgsc.ca 37 12 124069354 124069354 + Silent SNP C T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . TMED2 NM_006815 exon1 c.C171T p.I57I GGACATCGACGTG . 44 4 33 0 . 19 . 28446 bcgsc.ca 37 14 106653388 106653388 + RNA SNP C T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . AATACACAGCCAT . 61 8 56 0 . . ZCCHC14 23174 bcgsc.ca 37 16 87446484 87446484 + Missense_Mutation SNP G T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . ZCCHC14 NM_015144 exon12 c.C1432A p.P478T GCACAGGGAGAAC . 41 4 30 0 . 87 TUBB1 81027 bcgsc.ca 37 20 57594614 57594614 + Missense_Mutation SNP G A A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . TUBB1 NM_030773 exon1 c.G37A p.G13S CAGTGTGGCAACC . 53 4 36 0 . 42 . 0 bcgsc.ca 37 22 16402212 16402212 + RNA SNP C T T rs201359212 TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 C - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . . . . . . GGAGGGCCTTATG . 77 21 68 0 . . PKDREJ 10343 bcgsc.ca 37 22 46653730 46653730 + Missense_Mutation SNP G T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . PKDREJ NM_006071 exon1 c.C5490A p.D1830E TTCTGGGTCAATG . 48 4 50 0 . 195 SRPX2 27286 bcgsc.ca 37 X 99925824 99925824 + Missense_Mutation SNP G T T novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G - - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 . SRPX2 NM_014467 exon11 c.G1238T p.R413L TCACTCGCTCCTA . 50 4 32 0 . 41 CPXM2 119587 hgsc.bcm.edu 37 10 125601975 125601975 + Missense_Mutation SNP G G T rs17679897 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic . WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 CPXM2,NS,carcinoma,0,1 CPXM2 NM_198148 exon4 c.C543A p.D181E CGCTCCGTCATAA . 52 3 36 0 . 0 TXNRD2 10587 hgsc.bcm.edu 37 22 19865952 19865952 + Silent SNP G G A novel TCGA-3X-AAV9-01A-72D-A417-09 TCGA-3X-AAV9-10A-01D-A41A-09 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dd621b60-9752-48be-967c-43ee49990150 0c81b1b7-c24e-4b40-a844-bf702966e4a1 TXNRD2,NS,carcinoma,0,1 TXNRD2 . p.H428H . . ATGGGCGTGATAG . 31 2 34 0 . 0