Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ZFP112	7771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44832524	44832525	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001083335	exon5	c.1804_1805del	p.602_602del	TGTGAACTCTCTG	.	61	12	75	0	.	.
ARID1A	8289	hgsc.bcm.edu	37	1	27107135	27107136	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.,2	.	NM_006015	exon20	c.6746_6747insA	p.S2249fs	ACCACTCAGAGTT	.	15	10	16	0	.	842
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52437802	52437802	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004656	exon13	c.1360delG	p.E454fs	GGACTCTTTGAGC	.	17	11	28	0	.	.
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	125320826	125320826	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_130773	exon11	c.1678delA	p.S560fs	GAGGAAGCTGCTC	.	42	16	50	0	.	.
ZNF185	7739	hgsc.bcm.edu	37	X	152085855	152085856	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001178106	exon5	c.290_291insTA	p.S97fs	TAGACAGCTCTTC	.	53	25	58	0	.	.
FOXK1	221937	hgsc.bcm.edu;bcgsc.ca	37	7	4796750	4796750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001037165	exon5	c.G1176T	p.Q392H	GGAACAGGCATTC	.	81	4	75	0	.	.
ACSM5	54988	hgsc.bcm.edu	37	16	20448431	20448431	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ACSM5,NS,carcinoma,0,1	ACSM5	NM_017888	exon11	c.C1366A	p.R456R	GGGGACCGAGCTC	.	51	3	52	0	.	0
MID1	4281	hgsc.bcm.edu;bcgsc.ca	37	X	10422989	10422989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001193277	exon9	c.G1576T	p.G526W	AGCTCCCCTGGCT	.	69	5	99	0	.	.
DCAF8L2	347442	hgsc.bcm.edu;bcgsc.ca	37	X	27765742	27765742	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001136533	exon1	c.G730T	p.A244S	CGGCTGGCCAGTA	.	43	4	52	0	.	.
SLC25A2	83884	hgsc.bcm.edu	37	5	140683227	140683227	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SLC25A2,NS,carcinoma,0,1	SLC25A2	NM_031947	exon1	c.C206G	p.P69R	AGTGCCGGGCCGG	.	17	2	16	0	.	0
HERC2	8924	hgsc.bcm.edu;bcgsc.ca	37	15	28492030	28492030	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004667	exon22	c.G3249T	p.M1083I	AACACCCATTAGC	.	100	4	83	0	.	.
ATP11A	23250	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	113512205	113512205	+	Missense_Mutation	SNP	G	G	A	rs371031585	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_032189	exon21	c.G2492A	p.S831N	ATGTCAGCATGAT	.	29	4	27	0	.	.
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152547337	152547337	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004543	exon24	c.T2214A	p.H738Q	GTAGGTATGCTAG	.	44	11	63	0	.	.
PTH2	113091	hgsc.bcm.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C	rs200733272	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PTH2,NS,carcinoma,0,9	PTH2	NM_178449	exon1	c.C64G	p.L22V	CCACCAGCAGCAG	.	63	3	71	1	.	0
CD109	135228	hgsc.bcm.edu	37	6	74492445	74492445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CD109,NS,carcinoma,0,1	CD109	NM_133493	exon18	c.C2072A	p.P691Q	ATTTTCCAGAGAC	.	48	2	91	0	.	0
CHD1	1105	hgsc.bcm.edu	37	5	98192174	98192174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CHD1,NS,carcinoma,0,1	CHD1	NM_001270	exon35	c.G5043T	p.Q1681H	AGATCTCTGATCT	.	47	2	49	0	.	0
F13A1	2162	hgsc.bcm.edu	37	6	6305670	6305670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	F13A1,NS,adenocarcinoma,0,2	F13A1	NM_000129	exon3	c.G233A	p.R78H	CCTCTGCGGACAA	.	47	2	55	0	.	0
APLF	200558	hgsc.bcm.edu	37	2	68765137	68765137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.,7	.	NM_173545	exon7	c.G938A	p.R313K	CTAAAAGAACACC	.	42	4	43	1	.	69
SKIV2L	6499	hgsc.bcm.edu	37	6	31935499	31935499	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SKIV2L_ENST00000375394,colon,carcinoma,0,2	SKIV2L_ENST00000375394	NM_006929	exon22	c.C2591A	p.S864X	TCTCCTCGAACTC	.	45	4	42	0	.	0
DGCR8	54487	hgsc.bcm.edu	37	22	20073625	20073625	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DGCR8,NS,NS,0,1	DGCR8	NM_001190326	exon2	c.G139T	p.E47X	GGTGCAGAGGTAA	.	38	2	47	0	.	0
ZNF583	147949	hgsc.bcm.edu;bcgsc.ca	37	19	56934339	56934339	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001159861	exon5	c.G312T	p.V104V	GACAGTGGGAGCA	.	94	4	91	0	.	.
SIRPA	140885	hgsc.bcm.edu	37	20	1903045	1903045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001040022	exon5	c.C841A	p.Q281K	TACCCCCAGAGAC	.	67	5	69	0	.	.
ENTPD1-AS1	0	hgsc.bcm.edu	37	10	97687099	97687099	+	RNA	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	GGATTTGTTTGCC	.	45	4	55	0	.	.
DNAH7	56171	hgsc.bcm.edu	37	2	196671535	196671535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_018897	exon54	c.C10105A	p.P3369T	CTTCAGGGAAAAC	.	72	4	111	0	.	.
PDE3A	5139	hgsc.bcm.edu;bcgsc.ca	37	12	20801776	20801776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_000921	exon13	c.C2720T	p.A907V	TTTTGGCCACTGA	.	86	4	88	0	.	.
ELN	2006	hgsc.bcm.edu	37	7	73470731	73470731	+	Silent	SNP	C	C	A	rs376496267	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ELN,NS,carcinoma,0,1	ELN	NM_001081753	exon20	c.C1296A	p.P432P	TGTTCCCGGAGTC	.	37	3	39	0	.	0
ZNF804A	91752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	185802286	185802286	+	Silent	SNP	T	T	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_194250	exon4	c.T2163A	p.T721T	TAGAACTTACTGT	.	39	9	42	0	.	.
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103396598	103396598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001146197	exon4	c.A6449G	p.K2150R	ATACTTTTCTTGC	.	23	5	41	0	.	.
MGA	23269	hgsc.bcm.edu	37	15	42028642	42028642	+	Missense_Mutation	SNP	C	C	A	rs367727094	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MGA,NS,carcinoma,0,1	MGA	NM_001080541	exon13	c.C4180A	p.R1394S	TCTTCTCGTGTGA	.	43	3	47	0	.	0
CDC27	996	hgsc.bcm.edu	37	17	45216149	45216149	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CDC27_ENST00000531206,NS,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon13	c.G1678T	p.V560F	ACAGAACTGAAAG	.	37	2	58	0	.	0
PDZD2	23037	hgsc.bcm.edu	37	5	32093091	32093091	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_178140	exon20	c.C7806A	p.T2602T	ATCTACCATCCTA	.	80	4	77	0	.	.
VARS	7407	hgsc.bcm.edu	37	6	31752382	31752382	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	VARS,NS,carcinoma,0,1	VARS	NM_006295	exon11	c.C1457A	p.S486Y	ATGTCAGAGATGG	.	20	2	24	0	.	0
DNAH5	1767	hgsc.bcm.edu	37	5	13859644	13859644	+	Nonsense_Mutation	SNP	C	C	A	rs147339019	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DNAH5,NS,malignant_melanoma,0,1	DNAH5	NM_001369	exon30	c.G4867T	p.E1623X	AGCTCTCGATGAT	.	39	2	45	0	.	0
ABCB5	340273	hgsc.bcm.edu	37	7	20766683	20766683	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ABCB5_ENST00000404938,bladder,carcinoma,0,2	ABCB5_ENST00000404938	NM_001163941	exon22	c.G2646T	p.E882D	TTTGGAGAATATA	.	47	3	53	0	.	0
AHSA2	130872	hgsc.bcm.edu;bcgsc.ca	37	2	61413903	61413903	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_152392	exon6	c.G396T	p.L132L	GCAGCTGACCCCC	.	56	4	95	0	.	.
CPA6	57094	hgsc.bcm.edu	37	8	68658284	68658284	+	Silent	SNP	C	C	A	rs369835154	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CPA6,caecum,carcinoma,0,1	CPA6	NM_020361	exon1	c.G81T	p.P27P	GTGCCCCGGTTGC	.	31	3	49	0	.	0
NOTCH4	4855	hgsc.bcm.edu;bcgsc.ca	37	6	32169249	32169249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004557	exon22	c.C3784A	p.H1262N	GGAAGTGATCATG	.	98	5	43	0	.	.
PUM1	9698	hgsc.bcm.edu;bcgsc.ca	37	1	31467928	31467928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_014676	exon6	c.G860T	p.G287V	TCAATCCCATTCT	.	56	4	95	0	.	.
SPAG16	79582	hgsc.bcm.edu	37	2	215275017	215275017	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SPAG16,colon,carcinoma,0,1	SPAG16	NM_024532	exon16	c.G1874A	p.G625D	CTGACGGCACAGT	.	14	2	17	0	.	0
PWP1	11137	hgsc.bcm.edu	37	12	108097519	108097519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PWP1,colon,carcinoma,0,1	PWP1	NM_007062	exon10	c.G961A	p.D321N	TCATATGATAAGT	.	28	2	41	0	.	0
ACSS3	79611	hgsc.bcm.edu	37	12	81536974	81536974	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ACSS3,bladder,carcinoma,0,1	ACSS3	NM_024560	exon5	c.C869A	p.S290X	TTCTTTCAGAACA	.	50	3	58	0	.	0
LRP8	7804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	53730058	53730058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004631	exon10	c.G1438A	p.D480N	CCTTGTCCATGTA	.	15	5	14	0	.	.
FDXR	2232	hgsc.bcm.edu	37	17	72859251	72859251	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FDXR,NS,carcinoma,0,1	FDXR	NM_001258012	exon11	c.C1421A	p.P474H	CCAGAGGGGAGCA	.	42	2	51	0	.	0
CDCA2	157313	hgsc.bcm.edu;bcgsc.ca	37	8	25364722	25364722	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_152562	exon15	c.A2540T	p.N847I	AAAAAAATGGAAA	.	85	4	89	0	.	.
WDR26	80232	hgsc.bcm.edu;bcgsc.ca	37	1	224605987	224605987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_025160	exon6	c.C994A	p.L332M	TAAGCAGAGACAC	.	65	4	78	0	.	.
XAGE3	170626	hgsc.bcm.edu;bcgsc.ca	37	X	52893907	52893907	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_133179	exon4	c.C210A	p.L70L	CTCCTGGAGATCA	.	98	5	105	0	.	.
C10orf71	118461	hgsc.bcm.edu	37	10	50530860	50530860	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C10orf71_ENST00000374144,NS,carcinoma,0,2	C10orf71_ENST00000374144	NM_001135196	exon3	c.G270T	p.T90T	GGGCACGGAACAT	.	30	2	48	0	.	0
CCT6A	908	hgsc.bcm.edu	37	7	56119584	56119584	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001762	exon1	c.C43A	p.R15R	GTGGCCCGAGCGC	.	78	4	58	0	.	.
ZNF442	79973	hgsc.bcm.edu;bcgsc.ca	37	19	12461025	12461025	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_030824	exon6	c.G1374T	p.E458D	GGGTTTCTCTCCA	.	65	4	49	0	.	.
HKDC1	80201	hgsc.bcm.edu	37	10	70992818	70992818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HKDC1,NS,carcinoma,0,1	HKDC1	NM_025130	exon4	c.G424T	p.D142Y	ACCAAAGATTTAA	.	33	3	26	0	.	0
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32724972	32724972	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_016252	exon46	c.A8827G	p.R2943G	AGTGCAAGAGTGT	.	28	9	27	0	.	.
BMS1P4	729096	hgsc.bcm.edu	37	10	75464597	75464597	+	RNA	SNP	A	A	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	CTCTCAAAAAAAA	.	46	6	59	0	.	.
RASGRP2	10235	hgsc.bcm.edu;bcgsc.ca	37	11	64509528	64509528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001098671	exon3	c.C130A	p.P44T	ACCAGGGGTGCAT	.	47	4	44	0	.	.
ZHX3	23051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	39832673	39832673	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_015035	exon3	c.C884G	p.A295G	GGAAGGGCCTTGG	.	33	15	31	0	.	.
ABCA7	10347	hgsc.bcm.edu	37	19	1052100	1052100	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ABCA7,caecum,carcinoma,0,1	ABCA7	NM_019112	exon22	c.G3122T	p.R1041L	AGGCCCGCCTGCC	.	21	2	16	0	.	0
PCED1A	64773	hgsc.bcm.edu	37	20	2819363	2819363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FAM113A,colon,carcinoma,0,1	FAM113A	NM_022760	exon5	c.G473T	p.R158L	TTCTCCCGGTAGC	.	33	2	18	0	.	0
ZNF264	9422	hgsc.bcm.edu	37	19	57723025	57723025	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZNF264,NS,carcinoma,0,1	ZNF264	NM_003417	exon4	c.C560A	p.S187X	ATAACTCATGTGA	.	38	2	33	0	.	0
KLHL3	26249	hgsc.bcm.edu	37	5	136997638	136997638	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KLHL3,colon,carcinoma,-1,1	KLHL3	NM_017415	exon7	c.G719T	p.R240L	GGAAGTCGGACAT	.	47	2	73	0	.	-1
ATP11B	23200	hgsc.bcm.edu;bcgsc.ca	37	3	182583433	182583433	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_014616	exon13	c.C1390A	p.H464N	TTATCCCATCTTA	.	73	4	86	0	.	.
NFYB	4801	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	104517018	104517018	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_006166	exon5	c.C415A	p.Q139K	ATTTCTGAAGGTA	.	29	4	38	0	.	.
ERC2	26059	hgsc.bcm.edu	37	3	56468705	56468705	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ERC2_ENST00000288221,trunk,malignant_melanoma,0,1	ERC2_ENST00000288221	NM_015576	exon2	c.C331A	p.H111N	CTGTGTGGGAAAG	.	31	2	41	0	.	0
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5318295	5318295	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_139056	exon22	c.C3460T	p.L1154L	CAGTGCCTGGCTG	.	21	14	29	0	.	.
AHNAK	79026	hgsc.bcm.edu;bcgsc.ca	37	11	62287880	62287880	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001620	exon5	c.C14009A	p.P4670Q	ACATCTGGGCCCT	.	83	4	75	0	.	.
OPA1	4976	hgsc.bcm.edu	37	3	193372782	193372782	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_130837	exon22	c.G2144A	p.W715X	AACAGTGGACTGA	.	76	4	76	0	.	.
COPB2	9276	hgsc.bcm.edu	37	3	139097937	139097937	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	COPB2,caecum,carcinoma,0,1	COPB2	NM_004766	exon4	c.C307A	p.R103S	TACAGCGAATGTA	.	65	3	49	0	.	0
LARS2	23395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45500306	45500306	+	Silent	SNP	A	A	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_015340	exon8	c.A678T	p.S226S	CTGTTCATGGCGT	.	25	20	33	0	.	.
SETX	23064	hgsc.bcm.edu	37	9	135202917	135202917	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SETX,NS,carcinoma,0,1	SETX	NM_015046	exon10	c.C4068A	p.P1356P	TGATTTGGGTCTG	.	39	2	53	0	.	0
MMP8	4317	hgsc.bcm.edu;bcgsc.ca	37	11	102592253	102592253	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002424	exon4	c.C501T	p.H167H	GTCACCGTGATCT	.	77	4	107	0	.	.
OR5I1	10798	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	55703319	55703319	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_006637	exon1	c.G558A	p.L186L	TTTAAGCAGGGGA	.	55	7	66	0	.	.
CASP1	834	hgsc.bcm.edu	37	11	104899882	104899882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001257118	exon7	c.G975T	p.K325N	AAAATCCTTCTCT	.	59	3	70	0	.	.
KATNAL2	83473	hgsc.bcm.edu	37	18	44603829	44603829	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KATNAL2,colon,carcinoma,0,1	KATNAL2	NM_031303	exon12	c.C992A	p.P331Q	ACCTGCCGTGGTA	.	43	3	39	0	.	0
HTN1	3346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	70918808	70918808	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002159	exon2	c.C15T	p.V5V	TTTTGTCTTTGCT	.	57	17	93	0	.	.
ZFHX4	79776	hgsc.bcm.edu;bcgsc.ca	37	8	77617104	77617104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZFHX4,colon,carcinoma,0,1	ZFHX4	NM_024721	exon2	c.G781T	p.D261Y	AATGTGGACTTGT	.	87	4	111	0	.	0
CUL2	8453	hgsc.bcm.edu	37	10	35327979	35327979	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CUL2,rectum,carcinoma,0,1	CUL2	NM_001198778	exon9	c.G803A	p.R268Q	CGACATCGAATTT	.	75	3	72	0	.	0
BTRC	8945	hgsc.bcm.edu	37	10	103294590	103294590	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_033637	exon10	c.G1270T	p.G424X	CTGGTCGGACACC	.	58	4	54	0	.	.
LRP8	7804	hgsc.bcm.edu;bcgsc.ca	37	1	53716447	53716447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004631	exon17	c.C2591A	p.P864Q	TAGACTGGGTTGT	.	35	4	37	0	.	.
EIF3B	8662	hgsc.bcm.edu	37	7	2411439	2411439	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001037283	exon11	c.C1642A	p.R548R	ATTTTCCGAATGA	.	95	4	89	0	.	.
TFCP2	7024	hgsc.bcm.edu	37	12	51503017	51503017	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001173452	exon6	c.G604T	p.G202C	CTCCACCATGTTT	.	74	3	57	0	.	.
TRMT5	57570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61446086	61446086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_020810	exon2	c.A530G	p.Y177C	TGTTCATATGTTA	.	43	7	84	0	.	.
SATL1	340562	hgsc.bcm.edu;bcgsc.ca	37	X	84358922	84358922	+	Splice_Site	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001012980	exon3	c.1642-1G>T	.	CAATTCCTGTCAA	.	69	4	91	0	.	.
IGSF10	285313	hgsc.bcm.edu	37	3	151156014	151156014	+	Missense_Mutation	SNP	G	G	A	rs377142937		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	IGSF10,NS,carcinoma,0,1	IGSF10	NM_178822	exon6	c.C6335T	p.A2112V	TCCTCCGCTACCC	.	45	3	72	0	.	0
EPB41L5	57669	hgsc.bcm.edu;bcgsc.ca	37	2	120925069	120925069	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	EPB41L5,caecum,carcinoma,0,1	EPB41L5	NM_020909	exon23	c.C1990A	p.R664R	ACACCCCGGTGGA	.	62	4	42	0	.	0
PHLDB2	90102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111604232	111604232	+	Silent	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PHLDB2_ENST00000431670,NS,carcinoma,0,2	PHLDB2_ENST00000431670	NM_001134437	exon3	c.A1389G	p.R463R	GGAAAGACTCAGG	.	22	15	27	0	.	0
TOPBP1	11073	hgsc.bcm.edu;bcgsc.ca	37	3	133337058	133337058	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_007027	exon21	c.G3591T	p.Q1197H	GTTACCCTGTTTA	.	60	4	72	0	.	.
AHI1	54806	hgsc.bcm.edu	37	6	135763821	135763821	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001134832	exon13	c.C1811A	p.S604X	TTTAGTGAGAAGA	.	95	4	197	0	.	.
COL18A1	80781	hgsc.bcm.edu	37	21	46932175	46932175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_030582	exon42	c.C4414T	p.R1472W	ACGTGGCGGACGG	.	34	4	42	0	.	.
AFG3L1P	172	hgsc.bcm.edu	37	16	90050893	90050893	+	RNA	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	AATATCATACTCA	.	30	13	56	0	.	.
NT5C1B	93034	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	18766068	18766068	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001199087	exon5	c.C666T	p.R222R	GGTGCTGCGCCGG	.	67	23	93	0	.	.
HSPA9	3313	hgsc.bcm.edu;bcgsc.ca	37	5	137894311	137894311	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004134	exon12	c.G1446T	p.V482V	AATTTCCACTTGC	.	52	4	53	0	.	.
SMC5	23137	hgsc.bcm.edu	37	9	72967112	72967112	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SMC5,head_neck,malignant_melanoma,0,1	SMC5	NM_015110	exon25	c.G3171A	p.L1057L	GCTCCTGCAAAAT	.	33	3	54	0	.	0
SLURP1	57152	hgsc.bcm.edu	37	8	143823221	143823221	+	Nonsense_Mutation	SNP	C	C	A	rs200727790	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SLURP1,NS,carcinoma,0,1	SLURP1	NM_020427	exon2	c.G178T	p.E60X	CCTCACCTGCCTC	.	87	4	81	0	.	0
ITGB7	3695	hgsc.bcm.edu	37	12	53588035	53588035	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ITGB7,NS,NS,0,1	ITGB7	NM_000889	exon10	c.G1255T	p.E419X	TACCCTCCCTCTT	.	42	2	33	0	.	0
TSNARE1	203062	hgsc.bcm.edu;bcgsc.ca	37	8	143425475	143425475	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_145003	exon4	c.G597T	p.L199L	GTCGCCCAGCTTG	.	57	4	63	0	.	.
STAT5A	6776	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	40460310	40460310	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003152	exon17	c.C2021A	p.P674H	ACCGCCCCAAGGA	.	40	4	44	0	.	.
NEFH	4744	hgsc.bcm.edu;bcgsc.ca	37	22	29885828	29885828	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NEFH,NS,carcinoma,0,2	NEFH	NM_021076	exon4	c.C2199T	p.P733P	GACCCCCGAGAAG	.	77	5	69	0	.	0
SLC22A10	387775	hgsc.bcm.edu	37	11	63066993	63066993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SLC22A10,bladder,carcinoma,0,1	SLC22A10	NM_001039752	exon6	c.G962T	p.R321I	TTGTAAGATCCAC	.	45	2	49	0	.	0
APC	324	hgsc.bcm.edu	37	5	112175124	112175124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	APC,colon,carcinoma,0,3	APC	NM_001127510	exon17	c.C3833T	p.S1278L	CATTATCATCTTT	.	49	2	35	0	.	0
ZNF613	79898	hgsc.bcm.edu	37	19	52448266	52448266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZNF613,NS,carcinoma,0,1	ZNF613	NM_001031721	exon6	c.G1130T	p.C377F	GTGATTGTGGAAA	.	50	3	39	0	.	0
HAO1	54363	hgsc.bcm.edu	37	20	7886918	7886918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HAO1,NS,carcinoma,0,1	HAO1	NM_017545	exon4	c.G604T	p.D202Y	CACTGTCGTCTCC	.	42	2	60	0	.	0
UBE4A	9354	hgsc.bcm.edu;ucsc.edu	37	11	118263498	118263498	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004788	exon19	c.G2983T	p.A995S	GCAGATGCCTGTG	.	34	4	16	0	.	.
BCYRN1	618	hgsc.bcm.edu	37	X	70586052	70586052	+	RNA	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	CCTCCCCTCTCCC	.	84	4	76	0	.	.
DNAH5	1767	hgsc.bcm.edu	37	5	13820578	13820578	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DNAH5,NS,carcinoma,0,1	DNAH5	NM_001369	exon41	c.C6718A	p.P2240T	TCCAAGGAGGATG	.	36	3	31	0	.	0
THAP6	152815	hgsc.bcm.edu	37	4	76452236	76452236	+	Nonsense_Mutation	SNP	G	G	T	rs372598193	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_144721	exon5	c.G481T	p.E161X	ATCGGCGAGCTAG	.	98	4	91	0	.	.
SORBS1	10580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	97197306	97197306	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001034955	exon2	c.A17T	p.D6V	CCACCATCACATT	.	32	4	40	0	.	.
SEMA6A	57556	hgsc.bcm.edu	37	5	115831161	115831161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_020796	exon6	c.C392A	p.A131E	AACAATGCATCAT	.	69	4	76	0	.	.
FURIN	5045	hgsc.bcm.edu;bcgsc.ca	37	15	91421361	91421361	+	Splice_Site	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002569	exon8	c.668-1G>T	.	CGGCCAGGGGTGC	.	62	4	71	0	.	.
FAM45A	404636	hgsc.bcm.edu	37	10	120867507	120867507	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_207009	exon2	c.G83T	p.W28L	TTCTGTGGGTGTG	.	89	5	89	0	.	.
MYF5	4617	hgsc.bcm.edu	37	12	81110964	81110964	+	Missense_Mutation	SNP	C	C	T	rs375022310	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MYF5,colon,carcinoma,0,1	MYF5	NM_005593	exon1	c.C122T	p.A41V	TCGGAGCGCACAA	.	21	2	26	0	.	0
ARHGAP19-SLIT1	0	hgsc.bcm.edu	37	10	99052058	99052058	+	RNA	SNP	G	G	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	CAAAGCGATCAGC	.	17	7	19	0	.	.
DIS3L2	129563	hgsc.bcm.edu;bcgsc.ca	37	2	232894774	232894774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001257282	exon5	c.C350A	p.P117H	TGCTTCCCGAGGA	.	69	4	95	0	.	.
LGI2	55203	hgsc.bcm.edu;bcgsc.ca	37	4	25014069	25014069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_018176	exon7	c.C708A	p.F236L	GGAGTTGAACGTA	.	52	4	59	0	.	.
TLR8	51311	hgsc.bcm.edu	37	X	12939080	12939080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_138636	exon2	c.C1921A	p.L641M	AAGAATCTGACAC	.	89	4	92	0	.	.
ADAM17	6868	hgsc.bcm.edu;bcgsc.ca	37	2	9661362	9661362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003183	exon8	c.G927T	p.K309N	AGCATCCTTTTCT	.	74	4	59	0	.	.
CHRNG	1146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	233408058	233408058	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_005199	exon8	c.G879T	p.K293N	GGCCAAGAAGGTG	.	22	4	24	0	.	.
COL17A1	1308	hgsc.bcm.edu	37	10	105819419	105819419	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_000494	exon15	c.C1199A	p.S400X	AGGCCTGAGTCAG	.	54	4	75	0	.	.
FBXW2	26190	hgsc.bcm.edu	37	9	123550286	123550286	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FBXW2_ENST00000373926,NS,carcinoma,0,1	FBXW2_ENST00000373926	NM_012164	exon3	c.C251A	p.S84Y	TGTTTAGAGACGA	.	32	2	37	0	.	0
TADA2A	6871	hgsc.bcm.edu	37	17	35827572	35827572	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	TADA2A_ENST00000394395,NS,carcinoma,0,2	TADA2A_ENST00000394395	NM_001488	exon12	c.C838A	p.R280R	GAACTCCGAAGGG	.	41	3	46	0	.	0
SDK2	54549	hgsc.bcm.edu	37	17	71394551	71394551	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001144952	exon23	c.G3111T	p.E1037D	CTCTCCCTCCCCA	.	94	4	126	0	.	.
DNM3	26052	hgsc.bcm.edu	37	1	172061989	172061989	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001136127	exon13	c.C1519T	p.H507Y	CAGGTTCACAAGA	.	82	3	48	0	.	.
SCGB1D2	10647	hgsc.bcm.edu	37	11	62010926	62010926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SCGB1D2,NS,malignant_melanoma,0,1	SCGB1D2	NM_006551	exon2	c.G221T	p.R74L	AGAAACGAAGCCT	.	38	2	57	0	.	0
PRM3	58531	hgsc.bcm.edu	37	16	11367212	11367212	+	Silent	SNP	G	G	T	rs376400498	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PRM3,colon,carcinoma,0,1	PRM3	NM_021247	exon1	c.C241A	p.R81R	CCTGCCGCTCAGG	.	24	2	31	0	.	0
DUOX2	50506	hgsc.bcm.edu	37	15	45394116	45394116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DUOX2,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	DUOX2	NM_014080	exon21	c.G2726T	p.R909L	GACTCCCGGAACA	.	42	2	51	0	.	0
MUC20	200958	hgsc.bcm.edu	37	3	195452841	195452841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MUC20,trunk,malignant_melanoma,0,1	MUC20	NM_152673	exon3	c.C854A	p.S285Y	CCACCTCCGATCC	.	48	4	51	0	.	0
OR10H1	26539	hgsc.bcm.edu	37	19	15918728	15918728	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	OR10H1,right_upper_lobe,carcinoma,0,1	OR10H1	NM_013940	exon1	c.G120T	p.L40L	GTTGCCCAGCAGC	.	50	3	37	0	.	0
IVD	3712	hgsc.bcm.edu;bcgsc.ca	37	15	40702955	40702955	+	Missense_Mutation	SNP	C	C	T	rs376324882	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002225	exon4	c.C424T	p.R142C	CTTGTACGCAATG	.	56	4	46	0	.	.
ZNF259	8882	hgsc.bcm.edu;bcgsc.ca	37	11	116657702	116657702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003904	exon3	c.C407T	p.A136V	CTAAAGGCAGGAA	.	63	4	81	0	.	.
EIF3A	8661	hgsc.bcm.edu;bcgsc.ca	37	10	120820340	120820340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003750	exon9	c.G1244T	p.R415M	TGTTCCCTAACCC	.	74	4	56	0	.	.
STT3A	3703	hgsc.bcm.edu	37	11	125484040	125484040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	STT3A,colon,carcinoma,0,1	STT3A	NM_152713	exon14	c.G1613T	p.R538L	CAAACCGAACAAT	.	68	3	53	0	.	0
ICK	22858	hgsc.bcm.edu;bcgsc.ca	37	6	52880912	52880912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_016513	exon9	c.G800T	p.W267L	GGATCCCACTGAA	.	79	4	58	0	.	.
RBMX	27316	hgsc.bcm.edu;bcgsc.ca	37	X	135958731	135958731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002139	exon5	c.G472T	p.G158W	GACCCCCACTTCT	.	73	4	73	0	.	.
LYST	1130	hgsc.bcm.edu	37	1	235878584	235878584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	LYST,NS,carcinoma,0,1	LYST	NM_000081	exon42	c.G9701A	p.G3234D	TGGGAGCCATAGT	.	30	2	59	0	.	0
MTMR12	54545	hgsc.bcm.edu	37	5	32274182	32274182	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MTMR12,NS,carcinoma,0,1	MTMR12	NM_001040446	exon3	c.G189T	p.Q63H	ATCTTCCTGGACA	.	42	2	48	0	.	0
ECT2	1894	hgsc.bcm.edu;bcgsc.ca	37	3	172473321	172473321	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001258315	exon4	c.C259A	p.P87T	AGTTGTCCTGGAA	.	86	4	65	0	.	.
EAPP	55837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35005377	35005377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_018453	exon2	c.A179C	p.E60A	TCAAATTCATCTT	.	44	10	42	0	.	.
PCSK2	5126	hgsc.bcm.edu	37	20	17462334	17462334	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PCSK2,colon,carcinoma,0,1	PCSK2	NM_002594	exon12	c.G1536T	p.T512T	CATCACGGTCAAC	.	50	3	67	0	.	0
CILP	8483	hgsc.bcm.edu	37	15	65489606	65489606	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003613	exon9	c.G3018T	p.L1006L	GAACTCCAGACAG	.	25	4	17	0	.	.
TMEM38B	55151	hgsc.bcm.edu	37	9	108456998	108456998	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	TMEM38B,caecum,carcinoma,0,1	TMEM38B	NM_018112	exon1	c.C57A	p.P19P	GTTTCCCTTTTTT	.	61	3	93	0	.	0
CDC73	79577	hgsc.bcm.edu	37	1	193094241	193094241	+	Splice_Site	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CDC73,NS,carcinoma,0,1	CDC73	NM_024529	exon2	c.132-1G>T	.	ATTTCAGGACTGG	.	71	3	71	0	.	0
OPRK1	4986	hgsc.bcm.edu	37	8	54142028	54142028	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	OPRK1,NS,carcinoma,0,2	OPRK1	NM_000912	exon4	c.C972A	p.S324R	ATTCAGGCTACTG	.	18	2	32	0	.	0
AKR7A2	8574	hgsc.bcm.edu	37	1	19632584	19632584	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	AKR7A2,colon,carcinoma,0,2	AKR7A2	NM_003689	exon6	c.C846A	p.A282A	ATATGCGGCCTGC	.	25	2	24	0	.	0
NAP1L1	4673	hgsc.bcm.edu	37	12	76447054	76447054	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004537	exon10	c.G847T	p.G283W	CTGTCCCACGTCC	.	89	4	88	0	.	.
FOSL1	8061	hgsc.bcm.edu	37	11	65664318	65664318	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FOSL1,NS,neuroblastoma,0,1	FOSL1	NM_005438	exon2	c.G259T	p.G87W	GCGGCCCCAGGGC	.	41	2	55	0	.	0
OR2A5	393046	hgsc.bcm.edu	37	7	143748127	143748127	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	OR2A5,right_lower_lobe,carcinoma,0,1	OR2A5	NM_012365	exon1	c.C633A	p.L211L	GCCGCTCTGCCTG	.	44	2	53	0	.	0
CACNA1C	775	hgsc.bcm.edu;bcgsc.ca	37	12	2721141	2721141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_199460	exon30	c.G3850T	p.V1284L	TTCACCGTGGAGA	.	45	4	39	0	.	.
CAMK2G	818	hgsc.bcm.edu	37	10	75574960	75574960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_172171	exon20	c.C1484A	p.P495Q	ACGTGTGGGTTTA	.	46	3	30	0	.	.
HOXA10	3206	hgsc.bcm.edu	37	7	27210430	27210430	+	RNA	SNP	T	T	G	rs79213620	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TTATAGTTTTTTT	.	89	5	96	0	.	.
MRPL18	29074	hgsc.bcm.edu	37	6	160218528	160218528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MRPL18,NS,carcinoma,0,1	MRPL18	NM_014161	exon3	c.C449A	p.P150Q	CAACCCCGTGGGA	.	46	3	79	0	.	0
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	30950047	30950047	+	Missense_Mutation	SNP	A	A	T	rs376232207	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001105528	exon5	c.T315A	p.D105E	CTCCACATCTTGG	.	31	13	23	0	.	.
UXS1	80146	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	106761718	106761718	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	UXS1_ENST00000409501,NS,carcinoma,0,2	UXS1_ENST00000409501	NM_001253875	exon6	c.G400A	p.V134M	GCTCCACGTTTCT	.	35	7	50	0	.	0
KCNQ2	3785	hgsc.bcm.edu	37	20	62071037	62071037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_172106	exon6	c.G841T	p.G281W	TGTCCCCGTAGCC	.	91	4	84	0	.	.
CASQ1	844	hgsc.bcm.edu;bcgsc.ca	37	1	160169648	160169648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001231	exon10	c.C992T	p.P331L	TGGTCCCATACTG	.	62	4	37	0	.	.
GREM1	26585	hgsc.bcm.edu;broad.mit.edu	37	15	33023106	33023106	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_013372	exon2	c.A215G	p.E72G	GGGAGGAGGTGCT	.	11	5	9	0	.	.
NNT	23530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	43704461	43704461	+	Silent	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_182977	exon22	c.A3216G	p.T1072T	GAAAACATGTGAC	.	32	11	38	0	.	.
CTSA	5476	hgsc.bcm.edu	37	20	44523350	44523350	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CTSA,NS,carcinoma,0,1	CTSA	NM_000308	exon9	c.C893A	p.P298Q	ATGCCCCGTGTGC	.	31	3	51	0	.	0
ZNF536	9745	hgsc.bcm.edu	37	19	31039277	31039277	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZNF536,caecum,carcinoma,0,1	ZNF536	NM_014717	exon4	c.C2751A	p.S917S	AGGGTCCTTGCAA	.	36	2	36	0	.	0
OR5AC2	81050	hgsc.bcm.edu;bcgsc.ca	37	3	97806872	97806872	+	Missense_Mutation	SNP	C	C	A	rs377586613	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_054106	exon1	c.C856A	p.L286M	ATTCCCCTGCTAA	.	48	4	62	0	.	.
PBRM1	55193	hgsc.bcm.edu	37	3	52668817	52668817	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PBRM1_ENST00000356770,NS,carcinoma,0,5	PBRM1_ENST00000356770	NM_018313	exon12	c.G1102T	p.E368X	CTCCCTCTTCATA	.	11	3	28	0	.	0
SIGLEC9	27180	hgsc.bcm.edu	37	19	51628378	51628378	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SIGLEC9,NS,carcinoma,0,1	SIGLEC9	NM_001198558	exon1	c.C147A	p.G49G	GCATGGCTGGATT	.	56	3	48	0	.	0
NOS3	4846	hgsc.bcm.edu	37	7	150698924	150698924	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NOS3,NS,carcinoma,0,1	NOS3	NM_001160111	exon12	c.C1518A	p.S506S	GATCTCCGCCTCG	.	31	3	24	0	.	0
BDP1	55814	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	70754623	70754623	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_018429	exon2	c.C430A	p.R144R	AGATACCGAATAT	.	41	4	52	0	.	.
MAP3K13	9175	hgsc.bcm.edu	37	3	185184616	185184616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MAP3K13_ENST00000424227,NS,carcinoma,0,2	MAP3K13_ENST00000424227	NM_004721	exon10	c.G1508A	p.R503H	GCAGGCGTGAGCA	.	43	2	44	0	.	0
DDHD1	80821	hgsc.bcm.edu	37	14	53619480	53619480	+	Missense_Mutation	SNP	T	T	C	rs200797826	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.,102	.	NM_001160147	exon1	c.A337G	p.S113G	AGGAGCTGCCGCC	.	10	2	11	0	.	202
ABI3	51225	hgsc.bcm.edu	37	17	47299965	47299965	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ABI3,scalp,carcinoma,0,1	ABI3	NM_016428	exon8	c.C989A	p.S330Y	CCTTCTCTGAGGG	.	24	2	22	0	.	0
PLEKHS1	79949	hgsc.bcm.edu;bcgsc.ca	37	10	115537285	115537285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_182601	exon12	c.G1284T	p.M428I	TTGCATGGAATCA	.	53	4	64	0	.	.
EIF3J	8669	hgsc.bcm.edu	37	15	44849831	44849831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_003758	exon6	c.G554T	p.R185L	TAGTTCGAGATGT	.	77	3	49	0	.	.
TPTE2P1	646405	hgsc.bcm.edu	37	13	25507440	25507440	+	RNA	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	CCCCCAGAGGCAG	.	45	4	49	0	.	.
AQP7	364	hgsc.bcm.edu	37	9	33385274	33385274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	AQP7,NS,carcinoma,0,1	AQP7	NM_001170	exon8	c.G758T	p.W253L	CACCACCAGTTCT	.	79	4	86	0	.	0
MMRN1	22915	hgsc.bcm.edu	37	4	90816624	90816624	+	Missense_Mutation	SNP	G	G	A	rs139015467		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MMRN1,NS,carcinoma,0,1	MMRN1	NM_007351	exon1	c.G502A	p.V168I	GGAGGCGTTGGAG	.	45	2	77	0	0.000	0
MUC4	4585	hgsc.bcm.edu	37	3	195509559	195509559	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MUC4_ENST00000463781,NS,carcinoma,-1,1	MUC4_ENST00000463781	NM_018406	exon2	c.C8892T	p.T2964T	AGTGTCGGTGACA	.	97	5	128	0	.	-1
CCNA2	890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122739257	122739257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001237	exon7	c.T1192C	p.Y398H	TGAGGTAGGTCTG	.	28	8	49	0	.	.
SF3B1	23451	hgsc.bcm.edu	37	2	198269868	198269868	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_012433	exon11	c.G1471T	p.E491X	TTTGCTCTTCTGG	.	63	4	66	0	.	.
NCOA3	8202	hgsc.bcm.edu	37	20	46279833	46279833	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NCOA3,NS,carcinoma,0,3	NCOA3	NM_181659	exon20	c.G3759A	p.Q1253Q	GCAGCAGCAACAG	.	25	2	24	1	.	0
LYST	1130	hgsc.bcm.edu	37	1	235827341	235827341	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_000081	exon52	c.G11210T	p.W3737L	AAGTCCCATGTGC	.	77	4	79	0	.	.
GK3P	2713	hgsc.bcm.edu	37	4	166200025	166200025	+	RNA	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TGGTCCCCTAAAC	.	92	4	108	0	.	.
MEPE	56955	hgsc.bcm.edu	37	4	88767342	88767342	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MEPE,NS,carcinoma,0,1	MEPE	NM_020203	exon4	c.G1322A	p.R441H	CTTCTCGTGGTCT	.	36	2	52	1	.	0
CELF5	60680	hgsc.bcm.edu	37	19	3281207	3281207	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CELF5,NS,malignant_melanoma,0,2	CELF5	NM_021938	exon6	c.C614A	p.S205Y	CCTCCTCCAGCCT	.	51	3	44	0	.	0
PLBD1	79887	hgsc.bcm.edu	37	12	14664306	14664306	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_024829	exon8	c.G1074T	p.L358L	CAGGTCCAGAACC	.	90	3	85	0	.	.
ST8SIA4	7903	hgsc.bcm.edu	37	5	100222104	100222104	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ST8SIA4,NS,lymphoid_neoplasm,0,1	ST8SIA4	NM_175052	exon3	c.G446A	p.G149D	AGAATGCCAGAAT	.	43	2	49	0	.	0
GOLT1A	127845	hgsc.bcm.edu	37	1	204170901	204170901	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GOLT1A,bladder,carcinoma,0,1	GOLT1A	NM_198447	exon3	c.G156T	p.L52L	CTTCCTCAGGCCA	.	38	2	39	0	.	0
ARHGEF7	8874	hgsc.bcm.edu	37	13	111953840	111953840	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ARHGEF7_ENST00000375736,NS,carcinoma,0,1	ARHGEF7_ENST00000375736	NM_003899	exon19	c.C1779A	p.T593T	GGATACCGTATAT	.	74	3	120	0	.	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792751	109792751	+	Missense_Mutation	SNP	T	T	C	rs200277265		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CELSR2,colon,carcinoma,0,1	CELSR2	NM_001408	exon1	c.T50C	p.L17P	CGCCGCTGCTGCT	.	7	4	6	1	.	0
MS4A7	58475	hgsc.bcm.edu;bcgsc.ca	37	11	60152623	60152623	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_021201	exon3	c.C210A	p.P70P	TGCTCCCTACCCC	.	56	4	80	0	.	.
SCN2A	6326	hgsc.bcm.edu	37	2	166170618	166170618	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SCN2A_ENST00000375437,colon,carcinoma,0,5	SCN2A_ENST00000375437	NM_001040143	exon9	c.G1383T	p.Q461H	AGCTCAGGTATAG	.	23	2	31	0	.	0
FGB	2244	hgsc.bcm.edu	37	4	155491687	155491687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_005141	exon8	c.G1361T	p.W454L	ACACCTGGGACAT	.	52	4	70	0	.	.
MGAM	8972	hgsc.bcm.edu	37	7	141754596	141754596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MGAM_ENST00000549489,NS,carcinoma,0,3	MGAM_ENST00000549489	NM_004668	exon27	c.C3202A	p.L1068M	GTCCCTCTGAACA	.	75	3	103	0	.	0
FANCC	2176	hgsc.bcm.edu;bcgsc.ca	37	9	97934327	97934327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001243743	exon5	c.C448A	p.L150I	TTTTAAGCAAACC	.	94	4	109	0	.	.
KLHL31	401265	hgsc.bcm.edu	37	6	53519311	53519311	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KLHL31,NS,carcinoma,0,1	KLHL31	NM_001003760	exon2	c.C760A	p.L254I	TCAAAAGATCTGC	.	43	2	60	0	.	0
PNN	5411	hgsc.bcm.edu	37	14	39645733	39645733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002687	exon3	c.G188A	p.R63H	TCAGGCGTGGATT	.	78	3	84	0	.	.
ZNF432	9668	hgsc.bcm.edu;bcgsc.ca	37	19	52538068	52538068	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_014650	exon5	c.C864A	p.P288P	TATGTAGGGTTTC	.	34	4	36	0	.	.
TBX20	57057	hgsc.bcm.edu	37	7	35271118	35271118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	TBX20_ENST00000408931,colon,carcinoma,-1,1	TBX20_ENST00000408931	NM_001077653	exon6	c.G888T	p.E296D	TTACCTCTCAATG	.	72	3	54	0	.	-1
ARHGAP35	2909	hgsc.bcm.edu	37	19	47423517	47423517	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GRLF1_ENST00000317082,bladder,carcinoma,0,6	GRLF1_ENST00000317082	NM_004491	exon1	c.C1585A	p.R529R	GAACAGCGATTTA	.	41	2	36	0	.	0
OR2M1P	388762	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	248285660	248285660	+	RNA	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TGTAGACTTATGA	.	57	28	88	0	.	.
DFNB59	494513	hgsc.bcm.edu	37	2	179325879	179325879	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DFNB59,NS,carcinoma,0,1	DFNB59	NM_001042702	exon7	c.G937T	p.G313X	CTCTGTGGAATGG	.	48	2	60	0	.	0
RACGAP1	29127	hgsc.bcm.edu;bcgsc.ca	37	12	50395035	50395035	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	RACGAP1,NS,carcinoma,0,1	RACGAP1	NM_013277	exon9	c.C550A	p.R184S	TAGAGCGCTAGAA	.	51	4	44	0	.	0
DENND4A	10260	hgsc.bcm.edu	37	15	65983620	65983620	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001144823	exon23	c.G3309T	p.L1103F	AGCTCCCAATTTT	.	35	4	38	0	.	.
BLOC1S5-TXNDC5	100526836	hgsc.bcm.edu;ucsc.edu	37	6	7881499	7881499	+	RNA	SNP	T	T	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	GGGGGATGAGCAT	.	62	24	64	0	.	.
PTPN4	5775	hgsc.bcm.edu	37	2	120684190	120684190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PTPN4,NS,carcinoma,0,1	PTPN4	NM_002830	exon13	c.C1018A	p.Q340K	GAAGTCCAATCAG	.	58	3	58	0	.	0
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104117876	104117876	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001199378	exon9	c.G720A	p.M240I	CCATATGACCAAA	.	36	5	38	0	.	.
CSF1	1435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110458281	110458281	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_172210	exon3	c.G188A	p.C63Y	CCTCGTGCCAAAT	.	72	13	56	0	.	.
GREB1L	80000	hgsc.bcm.edu	37	18	19076555	19076555	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GREB1L,NS,carcinoma,0,1	GREB1L	NM_001142966	exon21	c.G3287T	p.G1096V	TCAGCGGGAAGGA	.	38	2	33	0	.	0
NEFH	4744	hgsc.bcm.edu	37	22	29885823	29885823	+	Missense_Mutation	SNP	A	A	T	rs145125701		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NEFH,NS,lymphoid_neoplasm,0,2	NEFH	NM_021076	exon4	c.A2194T	p.T732S	GCAAAGACCCCCG	.	78	4	67	0	.	0
MAMDC4	158056	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139754378	139754378	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_206920	exon26	c.C3234A	p.G1078G	GGTTGGCAGTGCC	.	32	9	40	0	.	.
PAX6	5080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	31823198	31823198	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001604	exon7	c.T310C	p.Y104H	GCTTATACTGGGC	.	58	14	40	0	.	.
KIAA1751	85452	hgsc.bcm.edu	37	1	1887065	1887065	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KIAA1751,colon,carcinoma,0,1	KIAA1751	NM_001080484	exon18	c.G2241T	p.Q747H	AGCCCCCTGGAAT	.	41	2	47	0	.	0
C9orf131	138724	hgsc.bcm.edu	37	9	35043842	35043842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C9orf131,NS,carcinoma,0,1	C9orf131	NM_203299	exon2	c.G1216T	p.D406Y	CTGGAAGATCCAT	.	35	2	49	0	.	0
GPR133	283383	hgsc.bcm.edu;bcgsc.ca	37	12	131476787	131476787	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_198827	exon8	c.C816A	p.P272P	GATGCCCACAGAT	.	85	4	58	0	.	.
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	56015537	56015537	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_052898	exon1	c.C489A	p.S163R	GTTCAGCTTCCGC	.	20	6	24	0	.	.
SCP2	6342	hgsc.bcm.edu;bcgsc.ca	37	1	53453786	53453786	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002979	exon11	c.G1059T	p.K353N	TTCAAAGGGACAC	.	67	4	90	0	.	.
PTPRJ	5795	hgsc.bcm.edu;bcgsc.ca	37	11	48168501	48168501	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_002843	exon15	c.C2985A	p.F995L	CATCTTCTGGAGA	.	77	4	67	0	.	.
NOX5	79400	hgsc.bcm.edu	37	15	69325389	69325389	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	NOX5,NS,carcinoma,0,1	NOX5	NM_024505	exon5	c.C627A	p.A209A	CGCTGCCCACTGG	.	33	2	28	0	.	0
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22157097	22157097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_007153	exon4	c.C739A	p.H247N	CCTTATGTTTAGT	.	46	24	36	0	.	.
SDK2	54549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	71334731	71334731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001144952	exon45	c.G6514T	p.V2172F	GTCAAACAAATGA	.	47	15	31	0	.	.
FIGNL1	63979	hgsc.bcm.edu;bcgsc.ca	37	7	50513283	50513283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001042762	exon4	c.C1703A	p.P568Q	GCTTCTGGGAGGG	.	52	4	34	0	.	.
PTGER4	5734	hgsc.bcm.edu	37	5	40692076	40692076	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	PTGER4,NS,neuroblastoma,0,1	PTGER4	NM_000958	exon3	c.C1063A	p.R355S	GGGTCCCGCAGGG	.	20	2	21	0	.	0
BAP1	8314	hgsc.bcm.edu;bcgsc.ca	37	3	52437805	52437805	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004656	exon13	c.C1356T	p.L452L	CTCTTTGAGCTTC	.	17	12	25	0	.	.
CTPS1	1503	hgsc.bcm.edu	37	1	41450520	41450520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001905	exon3	c.G194T	p.G65V	ATGGTGGGGAAGT	.	75	4	85	0	.	.
C5orf58	133874	hgsc.bcm.edu;bcgsc.ca	37	5	169661164	169661164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001102609	exon2	c.C25A	p.P9T	ATTCTCCCTGCTC	.	69	4	60	0	.	.
ATAD3B	83858	hgsc.bcm.edu	37	1	1431002	1431002	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ATAD3B,NS,carcinoma,0,1	ATAD3B	NM_031921	exon16	c.C1752A	p.P584P	GCACCCCCTATCC	.	47	2	71	0	.	0
CDH22	64405	hgsc.bcm.edu	37	20	44879706	44879706	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_021248	exon2	c.G228T	p.T76T	CGTGCCCGTGTAC	.	54	4	68	0	.	.
VPS45	11311	hgsc.bcm.edu	37	1	150054917	150054917	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_007259	exon10	c.G1054T	p.E352X	GTTTCAGAGGTTG	.	87	4	44	0	.	.
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35698454	35698454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_006289	exon55	c.G7237A	p.A2413T	CAGCTGCATTGGC	.	14	4	17	0	.	.
ZAP70	7535	hgsc.bcm.edu	37	2	98341665	98341665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001079	exon4	c.G513T	p.E171D	GCGTGAGGAGGCC	.	45	3	44	0	.	.
DNAAF3	352909	hgsc.bcm.edu	37	19	55670934	55670934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C19orf51,NS,carcinoma,0,1	C19orf51	NM_001256714	exon11	c.C1406A	p.A469E	CCGGGTGCCACAC	.	31	2	28	0	.	0
PLEKHM3	389072	hgsc.bcm.edu	37	2	208866251	208866251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.,2	.	NM_001080475	exon2	c.G113T	p.G38V	TGGATCCCATAAA	.	14	2	22	0	.	101
METAP1	23173	hgsc.bcm.edu	37	4	99916973	99916973	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_015143	exon1	c.C69A	p.P23P	GTGTCCCACTTGC	.	61	4	68	0	.	.
HTATIP2	10553	hgsc.bcm.edu	37	11	20385802	20385802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HTATIP2_ENST00000419348,NS,carcinoma,0,2	HTATIP2_ENST00000419348	NM_001098520	exon2	c.C121A	p.L41M	GAAGCCCTGTCGA	.	44	2	51	0	.	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	152647206	152647206	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_182961	exon80	c.G15325T	p.A5109S	CCCTTGCTTTCTG	.	42	34	48	0	.	.
CFP	5199	hgsc.bcm.edu	37	X	47487614	47487614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001145252	exon3	c.C290A	p.S97Y	AGCTGGGAGCCCT	.	48	4	74	0	.	.
FAIM2	23017	hgsc.bcm.edu	37	12	50294991	50294991	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FAIM2,NS,carcinoma,0,1	FAIM2	NM_012306	exon2	c.G133T	p.E45X	TCCCCTCCCCAGA	.	49	2	47	0	.	0
SSTR5-AS1	146336	hgsc.bcm.edu	37	16	1115551	1115551	+	RNA	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	GTTCTCGGGAGGG	.	52	4	45	0	.	.
HSPA12A	259217	hgsc.bcm.edu	37	10	118460575	118460575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HSPA12A,colon,carcinoma,0,1	HSPA12A	NM_025015	exon4	c.C320A	p.P107H	CTCTCGGGAGTCA	.	35	2	37	0	.	0
SETD1B	23067	hgsc.bcm.edu	37	12	122257702	122257702	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_015048	exon11	c.G3682T	p.E1228X	CCTGAGGAACCAG	.	56	4	46	0	.	.
VCL	7414	hgsc.bcm.edu	37	10	75860838	75860838	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	VCL,NS,carcinoma,0,1	VCL	NM_003373	exon14	c.C2005A	p.R669R	ACGGCCCGAGAAC	.	49	2	45	0	.	0
FER	2241	hgsc.bcm.edu	37	5	108382829	108382829	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FER,NS,carcinoma,0,1	FER	NM_005246	exon16	c.C1854A	p.P618P	TCATCCCAATATT	.	50	2	48	0	.	0
GPM6B	2824	hgsc.bcm.edu;bcgsc.ca	37	X	13801543	13801543	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001001995	exon4	c.G466T	p.V156L	CTTTCACTGCACT	.	66	4	71	0	.	.
ZFAND1	79752	hgsc.bcm.edu;bcgsc.ca	37	8	82626157	82626157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001170796	exon6	c.C476A	p.P159Q	ACCTGTGGTAATG	.	102	5	86	0	.	.
TRIM32	22954	hgsc.bcm.edu	37	9	119461766	119461766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	TRIM32,NS,carcinoma,0,1	TRIM32	NM_012210	exon2	c.G1745T	p.C582F	GCATGTGTGTGGA	.	13	2	20	0	.	0
DBNDD2	55861	hgsc.bcm.edu	37	20	44035143	44035143	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	DBNDD2_ENST00000372720,colon,carcinoma,0,1	DBNDD2_ENST00000372720	NM_018478	exon1	c.G52A	p.A18T	GCGCTCGCAGGGG	.	21	2	22	0	.	0
NCOR1	9611	hgsc.bcm.edu	37	17	16040656	16040656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001190440	exon13	c.G1478T	p.R493M	TAATTCCTTCTGA	.	46	4	48	0	.	.
SEPT1	1731	hgsc.bcm.edu	37	16	30392754	30392754	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SEPT1,NS,carcinoma,0,1	SEPT1	NM_052838	exon6	c.C487A	p.Q163K	GGTACTGCTCAAA	.	65	3	61	0	.	0
COL11A1	1301	hgsc.bcm.edu	37	1	103540202	103540202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	COL11A1_ENST00000370096,NS,carcinoma,0,2	COL11A1_ENST00000370096	NM_001854	exon4	c.C623A	p.T208K	ATCCTTGTTCCAA	.	37	2	35	0	.	0
GRIN2D	2906	hgsc.bcm.edu;bcgsc.ca	37	19	48918188	48918188	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_000836	exon6	c.C1480T	p.R494W	CTGAAGCGGCTGG	.	70	4	81	0	.	.
CNOT2	4848	hgsc.bcm.edu	37	12	70735907	70735907	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	CNOT2,NS,carcinoma,0,1	CNOT2	NM_001199302	exon13	c.C1199T	p.A400V	AATTTGCGTCACC	.	49	3	40	0	.	0
GON4L	54856	hgsc.bcm.edu;bcgsc.ca	37	1	155732107	155732107	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001037533	exon23	c.G4785T	p.R1595R	ACTTCCCCGCTTG	.	95	5	35	0	.	.
C10orf137	26098	hgsc.bcm.edu	37	10	127429150	127429150	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C10orf137,caecum,carcinoma,0,1	C10orf137	NM_001202438	exon16	c.C2100A	p.S700S	TTTGTCCGATGCT	.	44	2	84	0	.	0
ZNF560	147741	hgsc.bcm.edu	37	19	9579006	9579006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ZNF560,NS,carcinoma,0,1	ZNF560	NM_152476	exon10	c.G617T	p.R206I	TGGTTTCTTGCCT	.	39	2	38	0	.	0
ZNF586	54807	hgsc.bcm.edu;bcgsc.ca	37	19	58290630	58290630	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_017652	exon3	c.G675T	p.R225S	ACACAGGAGGATT	.	56	4	38	0	.	.
MTUS2	23281	hgsc.bcm.edu	37	13	29933476	29933476	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MTUS2_ENST00000431530,colon,carcinoma,0,1	MTUS2_ENST00000431530	NM_001033602	exon6	c.C3013T	p.R1005W	GCTGAGCGGCAGC	.	32	2	43	0	.	0
GOT1	2805	hgsc.bcm.edu	37	10	101163490	101163490	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GOT1,NS,carcinoma,0,1	GOT1	NM_002079	exon6	c.G784T	p.G262W	AGAGCCCGAAGTT	.	34	2	45	0	.	0
SEL1L	6400	hgsc.bcm.edu;bcgsc.ca	37	14	81946075	81946075	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_005065	exon20	c.C2056A	p.L686I	TCGCAAGGTGAAT	.	55	5	71	0	.	.
GPLD1	2822	hgsc.bcm.edu	37	6	24448239	24448239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001503	exon17	c.G1544T	p.W515L	AGAGTCCAGCCCA	.	73	3	54	0	.	.
STAB2	55576	hgsc.bcm.edu	37	12	104100719	104100719	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	STAB2,right_upper_lobe,carcinoma,0,1	STAB2	NM_017564	exon38	c.C4146A	p.A1382A	CACAGCCTGCGAG	.	14	2	25	0	.	0
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60043913	60043913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_005121	exon19	c.G4291A	p.V1431I	CTGCTACCAACTT	.	56	14	54	0	.	.
MAP3K8	1326	hgsc.bcm.edu	37	10	30747044	30747044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MAP3K8,NS,carcinoma,0,1	MAP3K8	NM_001244134	exon6	c.G905T	p.R302M	TGTGCAGGGGCCA	.	45	3	44	0	.	0
SSH1	54434	hgsc.bcm.edu	37	12	109182282	109182282	+	Missense_Mutation	SNP	C	C	A	rs367620838	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	SSH1,NS,carcinoma,0,1	SSH1	NM_018984	exon15	c.G2632T	p.G878W	CACTCCCGGCCTG	.	39	2	42	0	.	0
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1077985	1077985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_006598	exon12	c.A1592G	p.Q531R	ATGGCCTGCAGTA	.	44	18	55	0	.	.
CYTH3	9265	hgsc.bcm.edu;bcgsc.ca	37	7	6226714	6226714	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_004227	exon4	c.G216T	p.M72I	TCTTCCCATGGCT	.	58	4	45	0	.	.
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	100963395	100963395	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_016247	exon13	c.G1780A	p.E594K	TTAACTCTTTTTC	.	57	28	58	0	.	.
HRC	3270	hgsc.bcm.edu	37	19	49657713	49657713	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	HRC,NS,carcinoma,0,1	HRC	NM_002152	exon1	c.A782T	p.D261V	GAGACATCATCAT	.	12	2	11	0	.	0
CAPN9	10753	broad.mit.edu	37	1	230928600	230928600	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CAPN9	NM_006615	exon17	c.1796delT	p.L599fs	AGAACCTTTTCCT	.	6	2	19	0	.	116
SPEN	23013	broad.mit.edu	37	1	16261510	16261510	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SPEN	NM_015001	exon11	c.8775delG	p.Q2925fs	CACCCAGGGAGGC	.	6	2	6	0	.	374
IL10RA	3587	broad.mit.edu	37	11	117869604	117869604	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	IL10RA	NM_001558	exon7	c.C985A	p.Q329K	TCCCTGCAGACTG	.	32	3	32	0	.	46
KRTAP5-4	387267	broad.mit.edu	37	11	1642976	1642976	+	Silent	SNP	A	A	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KRTAP5-4,NS,carcinoma,0,5	KRTAP5-4	NM_001012709	exon1	c.T348G	p.G116G	CTTGGAACCCCCA	.	69	12	63	1	.	78
LYSMD4	145748	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	100272030	100272030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	LYSMD4	NM_152449	exon3	c.G87A	p.A29A	GGACACCGCTCTT	.	74	19	99	1	.	21
.	0	broad.mit.edu;ucsc.edu	37	15	76074431	76074431	+	RNA	SNP	C	C	T	rs371238897		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ENSG00000187812,NS,carcinoma,0,7	.	.	.	.	.	AGTCCTCGAGCTG	.	54	6	54	1	.	.
COG7	91949	broad.mit.edu	37	16	23415150	23415150	+	Silent	SNP	T	T	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	COG7	NM_153603	exon13	c.A1668G	p.K556K	TGACCCTTTTTCC	.	70	3	79	0	.	62
PPL	5493	broad.mit.edu	37	16	4945406	4945406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	PPL	NM_002705	exon11	c.C1098A	p.D366E	CTCCTGGTCCTGG	.	44	3	51	0	.	168
.	0	broad.mit.edu	37	16	50091423	50091424	+	RNA	DEL	AC	AC	-	rs199708338	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TTGCATACACACA	.	9	4	8	0	.	.
EVPL	2125	broad.mit.edu	37	17	74003247	74003247	+	Silent	SNP	C	C	T	rs201429993		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	EVPL	NM_001988	exon22	c.G6039A	p.A2013A	CAGTGCCGCTGGC	.	51	3	53	0	C|0.999;T|0.001	155
GPR179	440435	broad.mit.edu;ucsc.edu	37	17	36489224	36489224	+	Silent	SNP	G	G	A	rs372049950		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	GPR179	NM_001004334	exon10	c.C1947T	p.D649D	CAGCTCGTCCTCA	.	18	6	13	0	.	170
KLHL14	57565	broad.mit.edu	37	18	30260289	30260289	+	Splice_Site	SNP	C	C	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	KLHL14	NM_020805	exon7	c.G1431A	p.G477G	TACACCCCCTGTG	.	51	4	54	0	.	92
CEACAM20	125931	broad.mit.edu	37	19	45017504	45017504	+	RNA	DEL	T	T	-	rs10669399	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CEACAM20	.	.	.	.	TTTTGCTTTTTTT	.	11	4	4	0	.	31
.	0	broad.mit.edu	37	19	22882603	22882603	+	RNA	DEL	T	T	-	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TGGCTCTTTTTTT	.	6	2	4	0	.	.
.	400986	broad.mit.edu	37	2	96521834	96521834	+	Missense_Mutation	SNP	T	T	C	rs78091509	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ENSG00000174501,NS,carcinoma,0,6	.	.	.	.	.	TGGTTTTTTATTG	.	87	4	99	1	T|0.250;C|0.750	.
GPR113	165082	broad.mit.edu;bcgsc.ca	37	2	26536340	26536340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	GPR113	NM_001145168	exon9	c.A1378G	p.I460V	TCACTATGCCCCT	.	18	5	33	0	.	134
COL6A1	1291	broad.mit.edu	37	21	47421295	47421295	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	COL6A1	NM_001848	exon30	c.G1951C	p.V651L	GAGCTGGTCAAGG	.	10	3	26	0	.	101
MUC4	4585	broad.mit.edu	37	3	195505762	195505762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MUC4_ENST00000463781,NS,carcinoma,-1,4	MUC4	NM_018406	exon2	c.T12689C	p.L4230P	GAGGAAAGGCTGG	.	65	7	40	1	.	1505
MXD3	83463	broad.mit.edu	37	5	176738408	176738408	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	MXD3	NM_001142935	exon2	c.148delC	p.Q50fs	GAGCCTGGGGGGG	.	12	4	6	0	.	13
.	0	broad.mit.edu	37	5	96706256	96706256	+	RNA	DEL	T	T	-	rs34275465	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TAGTTCTTTTTTT	.	6	2	4	0	.	.
EXTL3	2137	broad.mit.edu	37	8	28573668	28573668	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	EXTL3	NM_001440	exon3	c.G92A	p.W31X	TCACGTGGCTCAG	.	17	3	23	0	.	83
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	A	G	rs372894655		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	MLLT3,bladder,carcinoma,0,25	MLLT3	NM_004529	exon5	c.T501C	p.S167S	GCTGCTACTGCTG	.	52	7	61	2	.	125
.	0	broad.mit.edu	37	X	90678413	90678414	+	RNA	DEL	AC	AC	-	rs111722152		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	ACACAAACACACA	.	7	1	4	0	CA|1.000;|0.000	.
KIAA1751	339457	ucsc.edu;bcgsc.ca	37	1	1887067	1887067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	KIAA1751,colon,carcinoma,+2,1	KIAA1751	NM_001080484	exon18	c.C2239A	p.Q747K	CCCCCTGGAATGC	.	42	4	50	0	.	92
CR2	1380	ucsc.edu;bcgsc.ca	37	1	207649657	207649657	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CR2	NM_001006658	exon15	c.G2795T	p.G932V	CTCCTGGAATGTC	.	28	4	34	0	.	164
ZNF292	23036	ucsc.edu;bcgsc.ca	37	6	87969651	87969651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	ZNF292	NM_015021	exon8	c.C6304A	p.L2102I	CAATCCCTTGAGT	.	41	4	71	0	.	479
CCL26	10344	ucsc.edu;bcgsc.ca	37	7	75401265	75401265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CCL26	NM_006072	exon3	c.T130C	p.W44R	AGGTCCAGGGAAG	.	25	4	21	0	.	5
SEC16A	9919	ucsc.edu;bcgsc.ca	37	9	139341749	139341749	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SEC16A	NM_014866	exon27	c.C6627A	p.L2209L	AGGAGCGAGAGCC	.	20	4	31	0	.	249
UNC5B	219699	ucsc.edu;bcgsc.ca	37	10	73050759	73050759	+	Missense_Mutation	SNP	T	T	G	rs117156661	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	UNC5B	NM_170744	exon9	c.T1187G	p.V396G	TGGGGGTGGTGGT	.	39	12	41	1	T|0.999;G|0.001	123
COX15	1355	ucsc.edu;bcgsc.ca	37	10	101489417	101489417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	COX15	NM_078470	exon2	c.G165T	p.R55S	TGTACCCCTTCCA	.	26	4	32	0	.	25
DAK	26007	ucsc.edu;bcgsc.ca	37	11	61109333	61109333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DAK	NM_015533	exon7	c.G604T	p.G202C	GTCCCTGGTTCCA	.	33	4	35	0	.	52
PC	5091	ucsc.edu;bcgsc.ca	37	11	66639209	66639209	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	PC	NM_000920	exon4	c.G270T	p.L90L	GGGGGCCAGGCCG	.	33	4	24	0	.	116
KDM4B	23030	ucsc.edu;bcgsc.ca	37	19	5071058	5071058	+	Missense_Mutation	SNP	C	C	T	rs151146933	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	KDM4B	NM_015015	exon7	c.C664T	p.R222W	CTGGAGCGGCTGG	.	46	5	50	0	C|1.000;A|0.000	120
C19orf80	55908	ucsc.edu;bcgsc.ca	37	19	11352354	11352354	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	C19orf80	NM_018687	exon4	c.C588A	p.L196L	GGCGCTCCCAGCC	.	40	4	39	0	.	8
CYP4F3	4051	ucsc.edu	37	19	15760954	15760954	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CYP4F3	NM_001199209	exon7	c.C879A	p.S293S	CAAATCCAAGACT	.	33	4	47	0	.	69
DDX17	10521	ucsc.edu;bcgsc.ca	37	22	38881994	38881994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DDX17	NM_001098504	exon13	c.G2142T	p.Q714H	GGCAGTCTGCCCC	.	27	4	26	0	.	73
DMC1	11144	ucsc.edu;bcgsc.ca	37	22	38917699	38917699	+	Silent	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DMC1	NM_007068	exon13	c.G867T	p.G289G	GTGTCCCCCAATG	.	31	4	31	0	.	33
DIAPH2	1730	ucsc.edu	37	X	96048621	96048621	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DIAPH2	.	.	.	.	TATCCTCACATAT	.	35	4	31	0	.	148
MROH7	374977	bcgsc.ca	37	1	55172120	55172120	+	Silent	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_001039464	exon22	c.C3577A	p.R1193R	ACCCACCGAGACA	.	18	3	25	0	.	.
.	0	bcgsc.ca	37	1	79215094	79215094	+	RNA	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	GTCCTGGTTCCAA	.	24	8	18	0	.	.
C1orf74	148304	bcgsc.ca	37	1	209956321	209956321	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	C1orf74,rectum,carcinoma,0,1	C1orf74	NM_152485	exon2	c.C659A	p.S220Y	CTAAAAGAATAGA	.	42	4	48	0	.	30
CENPF	1063	bcgsc.ca	37	1	214820276	214820276	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CENPF	NM_016343	exon13	c.G7363A	p.A2455T	AGAGTGGCAGCCC	.	53	4	99	0	.	321
GALNT14	79623	bcgsc.ca	37	2	31168651	31168651	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	GALNT14	NM_001253826	exon8	c.G755T	p.G252V	TCACCCCCTCTGA	.	56	4	68	0	.	103
CKAP2L	150468	bcgsc.ca	37	2	113513554	113513554	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CKAP2L	NM_152515	exon4	c.G1394A	p.R465K	AAGTACCTTCGAT	.	52	4	56	0	.	54
NEB	4703	bcgsc.ca	37	2	152354773	152354773	+	Splice_Site	SNP	C	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	NEB	NM_001164507	exon171	c.24207+1G>A	.	AAAATACCGAGCT	.	66	4	83	0	.	1697
PRPF40A	55660	bcgsc.ca	37	2	153573781	153573781	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	PRPF40A	.	.	.	.	GAGACCCAAGAGC	.	49	4	61	0	.	149
.	0	bcgsc.ca	37	2	228513200	228513200	+	RNA	SNP	G	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	GGTAATGATGAAA	.	38	8	57	0	.	.
SUMF1	285362	bcgsc.ca	37	3	4452606	4452606	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SUMF1	NM_001164675	exon7	c.G897T	p.W299C	CCATTCCCATGCG	.	21	3	66	0	.	23
GLB1	2720	bcgsc.ca	37	3	33110405	33110405	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	GLB1,NS,carcinoma,-1,1	GLB1	NM_000404	exon3	c.C303A	p.D101E	ATCATGGTCCTCA	.	22	3	38	0	.	51
BMP2K	55589	bcgsc.ca	37	4	79832212	79832212	+	Silent	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	BMP2K	NM_198892	exon16	c.C2511A	p.L837L	ACTCCTCACCTCA	.	26	3	55	0	.	169
.	0	bcgsc.ca	37	5	54154080	54154080	+	RNA	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TCTTCCCGTCATA	.	49	4	55	0	.	.
.	0	bcgsc.ca	37	5	110283910	110283910	+	RNA	SNP	T	C	C	rs80293008	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TTTTGGTCTAATA	.	41	7	25	0	.	.
.	0	bcgsc.ca	37	5	110283912	110283912	+	RNA	SNP	T	C	C	rs74826826	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TTGGTCTAATAAT	.	43	7	24	0	.	.
.	0	bcgsc.ca	37	5	110283938	110283938	+	RNA	SNP	A	G	G	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TCTGTCATGATGC	.	37	6	23	0	.	.
.	0	bcgsc.ca	37	5	110283940	110283940	+	RNA	SNP	G	C	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TGTCATGATGCAA	.	34	6	24	0	.	.
.	0	bcgsc.ca	37	5	110283944	110283944	+	RNA	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	ATGATGCAAGAAA	.	35	6	23	0	.	.
RREB1	6239	bcgsc.ca	37	6	7187719	7187719	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	RREB1	NM_001003700	exon5	c.G224T	p.C75F	AGATTTGCACTAC	.	71	4	93	0	.	242
.	442234	bcgsc.ca	37	6	87832078	87832078	+	RNA	SNP	G	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	GATCCAGGTTTTC	.	31	26	49	0	.	.
LAMA2	3908	bcgsc.ca	37	6	129588265	129588265	+	Silent	SNP	G	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	LAMA2	NM_001079823	exon16	c.G2223A	p.R741R	GCCTAGGCACAGG	.	12	3	35	0	.	481
SERAC1	84947	bcgsc.ca	37	6	158569934	158569934	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SERAC1	NM_032861	exon5	c.G318T	p.L106F	TGTTGCCAATACT	.	44	4	60	0	.	31
.	0	bcgsc.ca	37	7	56356156	56356156	+	RNA	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	CAACAACTAATTA	.	35	16	36	0	.	.
DNAJC2	27000	bcgsc.ca	37	7	102982346	102982346	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DNAJC2	NM_001129887	exon2	c.G120T	p.K40N	TCTCCTCTTAACA	.	49	4	40	0	.	46
.	392140	bcgsc.ca	37	7	143839528	143839528	+	RNA	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	ACGATCCTGGCTC	.	14	3	22	0	.	.
CA8	767	bcgsc.ca	37	8	61144922	61144922	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CA8	NM_004056	exon4	c.G434T	p.W145L	GAGTTCCAGTGGA	.	28	3	38	0	.	31
ASAP1	50807	bcgsc.ca	37	8	131070296	131070296	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	ASAP1	NM_018482	exon29	c.G3219T	p.K1073N	AATGGTCTTCACT	.	68	4	69	0	.	133
GRINA	2907	bcgsc.ca	37	8	145065564	145065564	+	Missense_Mutation	SNP	C	A	A	rs377024859	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	GRINA	NM_001009184	exon2	c.C173A	p.P58H	GGTACCCCCATGG	.	39	4	39	0	.	25
CDC37L1	55664	bcgsc.ca	37	9	4684988	4684988	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CDC37L1	NM_017913	exon2	c.G244T	p.A82S	AGCTTAGCACTGC	.	29	3	44	0	.	19
LOC286238	0	bcgsc.ca	37	9	91266948	91266948	+	RNA	SNP	C	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TTAGGACAGATGT	.	34	3	86	0	.	.
CACUL1	143384	bcgsc.ca	37	10	120450823	120450823	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	NM_153810	exon7	c.C979A	p.Q327K	GATCTTGAGCAGC	.	136	5	126	0	.	.
CAPRIN1	4076	bcgsc.ca	37	11	34074142	34074142	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CAPRIN1	NM_203364	exon2	c.G175T	p.G59W	ATTCTCGGGGTGA	.	56	4	51	0	.	110
.	0	bcgsc.ca	37	11	71417571	71417571	+	RNA	SNP	C	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	CTAACTCGCTCAA	.	138	7	123	0	.	.
MLL2	9757	bcgsc.ca	37	12	49421075	49421075	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	MLL2	NM_003482	exon48	c.C14674T	p.H4892Y	AGCTGTGCTGAGT	.	50	4	47	0	.	1173
CIT	11113	bcgsc.ca	37	12	120135559	120135559	+	Silent	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CIT	NM_001206999	exon46	c.C5787A	p.S1929S	GTATGAGGACGCC	.	29	4	43	0	.	535
.	644022	bcgsc.ca	37	12	125420235	125420235	+	RNA	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	CTACCCCTCCACC	.	75	5	40	0	.	.
EP400	57634	bcgsc.ca	37	12	132547093	132547093	+	Silent	SNP	A	G	G	rs28513925	bycluster	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	EP400,NS,carcinoma,0,15	EP400	NM_015409	exon47	c.A8181G	p.Q2727Q	GCAACAACAGCAG	.	31	5	30	1	A|0.500;G|0.500	370
.	100128011	bcgsc.ca	37	13	90823573	90823573	+	RNA	SNP	A	C	C	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	AGTTTAATACCAT	.	32	16	25	0	.	.
POLE2	5427	bcgsc.ca	37	14	50120901	50120901	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	POLE2	NM_001197331	exon14	c.G1105T	p.D369Y	CAGGATCCTCTGG	.	76	4	108	0	.	36
.	0	bcgsc.ca	37	14	106444624	106444624	+	RNA	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TCTGGGCCTTGAT	.	62	4	77	0	.	.
HERC2	8924	bcgsc.ca	37	15	28375649	28375649	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	HERC2	NM_004667	exon82	c.G12662T	p.W4221L	GCGTACCAGGTAT	.	44	4	36	0	.	501
TMOD2	29767	bcgsc.ca	37	15	52060462	52060462	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	TMOD2	NM_014548	exon3	c.G130T	p.A44S	CAGAGTGCCATGC	.	48	4	42	0	.	36
CIITA	4261	bcgsc.ca	37	16	11001930	11001930	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CIITA	NM_000246	exon11	c.C2581A	p.L861M	TTCTCCCTGGACC	.	34	4	36	0	.	92
USP6	9098	bcgsc.ca	37	17	5040990	5040990	+	Silent	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	USP6	NM_004505	exon12	c.G870T	p.V290V	TTTGGTGGAAGGA	.	54	4	75	0	.	213
JUP	3728	bcgsc.ca	37	17	39912069	39912069	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	JUP	NM_021991	exon14	c.G2165T	p.G722V	TAGTCTCCATCCA	.	19	4	22	0	.	64
SCRN2	90507	bcgsc.ca	37	17	45918185	45918185	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SCRN2	NM_138355	exon2	c.C25A	p.P9T	AACATGGGGAGTC	.	68	5	80	0	.	35
.	400836	bcgsc.ca	37	20	10366879	10366879	+	RNA	SNP	T	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TCTACGTTGCCAT	.	25	5	24	0	.	.
FRG1B	284802	bcgsc.ca	37	20	29632707	29632707	+	Silent	SNP	G	A	A	rs6057187	bycluster;by2hit2allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	FRG1B,NS,malignant_melanoma,0,4	FRG1B	.	.	.	.	GCATGAGACGCTT	.	256	17	249	11	G|0.500;A|0.500	181
ACSS2	55902	bcgsc.ca	37	20	33470783	33470783	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	ACSS2	NM_001076552	exon2	c.C365A	p.A122D	AAGTTGCTTTTTA	.	28	3	48	0	.	75
SYNJ1	8867	bcgsc.ca	37	21	34072179	34072179	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	SYNJ1	NM_203446	exon4	c.C565A	p.Q189K	GTTCTTGCATGCT	.	27	3	33	0	.	253
.	644637	bcgsc.ca	37	22	16349406	16349406	+	RNA	SNP	G	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	.	.	.	.	.	TGCAGCGGAACCC	.	21	4	44	0	.	.
CLTCL1	8218	bcgsc.ca	37	22	19226799	19226799	+	Missense_Mutation	SNP	T	A	A	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	CLTCL1	NM_001835	exon5	c.A794T	p.Q265L	CGTACCTGCATAG	.	55	4	54	0	.	115
DMD	1756	bcgsc.ca	37	X	32519901	32519901	+	Missense_Mutation	SNP	G	T	T	rs1800260	alternate_allele	TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	DMD	NM_004006	exon19	c.C2351A	p.A784D	GCCTGAGCTGATC	.	24	3	26	0	G|1.000;|0.000	2127
TRPC5	7224	bcgsc.ca	37	X	111155896	111155896	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	.	TRPC5	NM_012471	exon3	c.C523A	p.R175S	TGCAGCGGATCTG	.	14	3	22	0	.	142
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37880219	37880220	+	Missense_Mutation	DNP	TT	TT	CC	novel		TCGA-4G-AAZO-01A-12D-A417-09	TCGA-4G-AAZO-11A-11D-A41A-09	TT	TT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9aa164bc-bd5d-43fc-b0df-49a1eb05c6ab	48de3d5a-35d8-456d-a23e-e2dc25a840ac	ERBB2,NS,carcinoma,0,20	ERBB2	NM_004448	exon19	c.T2264C	p.L755P	AAGTGTTGAGGGA	.	24	10	26	0	.	0